Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygeN and ygeN are separated by 16 nucleotides ygeN and ygeK are separated by 411 nucleotides ygeK and JDDGAC_23500 are separated by 18 nucleotides JDDGAC_23500 and ygeI are separated by 186 nucleotides
JDDGAC_23485: ygeN - Putative uncharacterized protein YgeN, at 4,499,326 to 4,499,586
ygeN
JDDGAC_23490: ygeN - Putative uncharacterized protein YgeN, at 4,499,603 to 4,500,034
ygeN
JDDGAC_23495: ygeK - Uncharacterized response regulatory protein YgeK, at 4,500,446 to 4,500,889
ygeK
JDDGAC_23500: JDDGAC_23500 - Transglycosylase SLT domain-containing protein, at 4,500,908 to 4,501,309
_23500
JDDGAC_23505: ygeI - Uncharacterized protein YgeI, at 4,501,496 to 4,501,714
ygeI
Position (kb) 4500
4501 Strain fitness (log2 ratio) -2
-1
0
1 at 4499.722 kb on + strand, within ygeN at 4499.725 kb on - strand, within ygeN at 4499.757 kb on + strand, within ygeN at 4500.342 kb on + strand at 4500.496 kb on + strand, within ygeK at 4500.649 kb on - strand, within ygeK at 4500.778 kb on - strand, within ygeK at 4500.888 kb on - strand at 4501.276 kb on + strand at 4501.413 kb on + strand at 4501.630 kb on + strand, within ygeI at 4501.808 kb on + strand at 4501.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,499,722 + ygeN JDDGAC_23490 0.28 +0.0 4,499,725 - ygeN JDDGAC_23490 0.28 +0.5 4,499,757 + ygeN JDDGAC_23490 0.36 -0.4 4,500,342 + -1.0 4,500,496 + ygeK JDDGAC_23495 0.11 -0.5 4,500,649 - ygeK JDDGAC_23495 0.46 -2.5 4,500,778 - ygeK JDDGAC_23495 0.75 -2.4 4,500,888 - -0.2 4,501,276 + +0.1 4,501,413 + -0.5 4,501,630 + ygeI JDDGAC_23505 0.61 -0.6 4,501,808 + -1.4 4,501,848 - -0.3
Or see this region's nucleotide sequence