Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcB and elbB are separated by 229 nucleotides elbB and mtgA overlap by 4 nucleotides mtgA and yrbL overlap by 4 nucleotides
JDDGAC_21520: arcB - aerobic respiration two-component sensor histidine kinase ArcB, at 4,122,705 to 4,125,041
arcB
JDDGAC_21530: elbB - isoprenoid biosynthesis glyoxalase ElbB, at 4,125,271 to 4,125,924
elbB
JDDGAC_21535: mtgA - monofunctional biosynthetic peptidoglycan transglycosylase, at 4,125,921 to 4,126,649
mtgA
JDDGAC_21540: yrbL - PhoP regulatory network protein YrbL, at 4,126,646 to 4,127,278
yrbL
Position (kb) 4125
4126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4124.399 kb on + strand, within arcB at 4124.553 kb on + strand, within arcB at 4124.657 kb on + strand, within arcB at 4124.734 kb on + strand, within arcB at 4124.762 kb on - strand, within arcB at 4124.855 kb on + strand at 4125.112 kb on - strand at 4125.112 kb on - strand at 4125.121 kb on + strand at 4125.122 kb on - strand at 4125.159 kb on + strand at 4125.160 kb on - strand at 4125.175 kb on - strand at 4125.175 kb on - strand at 4125.186 kb on + strand at 4125.186 kb on + strand at 4125.350 kb on + strand, within elbB at 4125.354 kb on + strand, within elbB at 4125.354 kb on + strand, within elbB at 4125.354 kb on + strand, within elbB at 4125.415 kb on - strand, within elbB at 4125.670 kb on - strand, within elbB at 4125.675 kb on + strand, within elbB at 4125.675 kb on + strand, within elbB at 4125.675 kb on + strand, within elbB at 4125.675 kb on + strand, within elbB at 4125.676 kb on - strand, within elbB at 4125.732 kb on + strand, within elbB at 4125.802 kb on - strand, within elbB at 4125.822 kb on + strand, within elbB at 4125.823 kb on - strand, within elbB at 4125.844 kb on + strand, within elbB at 4125.844 kb on + strand, within elbB at 4125.845 kb on - strand, within elbB at 4125.845 kb on - strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.846 kb on + strand, within elbB at 4125.847 kb on - strand, within elbB at 4125.937 kb on + strand at 4126.023 kb on - strand, within mtgA at 4126.088 kb on + strand, within mtgA at 4126.320 kb on - strand, within mtgA at 4126.320 kb on - strand, within mtgA at 4126.402 kb on - strand, within mtgA at 4126.461 kb on + strand, within mtgA at 4126.461 kb on + strand, within mtgA at 4126.462 kb on - strand, within mtgA at 4126.519 kb on + strand, within mtgA at 4126.519 kb on + strand, within mtgA at 4126.520 kb on - strand, within mtgA at 4126.520 kb on - strand, within mtgA at 4126.520 kb on - strand, within mtgA at 4126.522 kb on + strand, within mtgA at 4126.522 kb on + strand, within mtgA at 4126.526 kb on + strand, within mtgA at 4126.526 kb on + strand, within mtgA at 4126.564 kb on - strand, within mtgA at 4126.603 kb on - strand at 4126.603 kb on - strand at 4126.603 kb on - strand at 4126.609 kb on + strand at 4126.873 kb on + strand, within yrbL
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,124,399 + arcB JDDGAC_21520 0.72 -0.3 4,124,553 + arcB JDDGAC_21520 0.79 +0.1 4,124,657 + arcB JDDGAC_21520 0.84 -2.3 4,124,734 + arcB JDDGAC_21520 0.87 +1.5 4,124,762 - arcB JDDGAC_21520 0.88 -0.7 4,124,855 + -0.3 4,125,112 - -1.2 4,125,112 - +0.0 4,125,121 + -2.4 4,125,122 - -0.5 4,125,159 + +0.3 4,125,160 - -0.3 4,125,175 - -1.4 4,125,175 - -0.2 4,125,186 + +0.1 4,125,186 + -1.9 4,125,350 + elbB JDDGAC_21530 0.12 +0.3 4,125,354 + elbB JDDGAC_21530 0.13 +0.5 4,125,354 + elbB JDDGAC_21530 0.13 +1.3 4,125,354 + elbB JDDGAC_21530 0.13 +1.1 4,125,415 - elbB JDDGAC_21530 0.22 +0.5 4,125,670 - elbB JDDGAC_21530 0.61 -0.4 4,125,675 + elbB JDDGAC_21530 0.62 -1.3 4,125,675 + elbB JDDGAC_21530 0.62 +0.8 4,125,675 + elbB JDDGAC_21530 0.62 +0.2 4,125,675 + elbB JDDGAC_21530 0.62 -0.4 4,125,676 - elbB JDDGAC_21530 0.62 -2.3 4,125,732 + elbB JDDGAC_21530 0.70 +0.7 4,125,802 - elbB JDDGAC_21530 0.81 +0.3 4,125,822 + elbB JDDGAC_21530 0.84 -1.2 4,125,823 - elbB JDDGAC_21530 0.84 -0.5 4,125,844 + elbB JDDGAC_21530 0.88 +1.2 4,125,844 + elbB JDDGAC_21530 0.88 -1.6 4,125,845 - elbB JDDGAC_21530 0.88 -1.7 4,125,845 - elbB JDDGAC_21530 0.88 -0.6 4,125,846 + elbB JDDGAC_21530 0.88 -1.3 4,125,846 + elbB JDDGAC_21530 0.88 -0.6 4,125,846 + elbB JDDGAC_21530 0.88 -0.5 4,125,846 + elbB JDDGAC_21530 0.88 +0.4 4,125,846 + elbB JDDGAC_21530 0.88 -2.3 4,125,846 + elbB JDDGAC_21530 0.88 -0.3 4,125,846 + elbB JDDGAC_21530 0.88 -2.0 4,125,847 - elbB JDDGAC_21530 0.88 +1.0 4,125,937 + +0.3 4,126,023 - mtgA JDDGAC_21535 0.14 -1.1 4,126,088 + mtgA JDDGAC_21535 0.23 -1.8 4,126,320 - mtgA JDDGAC_21535 0.55 -0.1 4,126,320 - mtgA JDDGAC_21535 0.55 -1.9 4,126,402 - mtgA JDDGAC_21535 0.66 -0.1 4,126,461 + mtgA JDDGAC_21535 0.74 -1.4 4,126,461 + mtgA JDDGAC_21535 0.74 +0.2 4,126,462 - mtgA JDDGAC_21535 0.74 +2.5 4,126,519 + mtgA JDDGAC_21535 0.82 -2.8 4,126,519 + mtgA JDDGAC_21535 0.82 +1.1 4,126,520 - mtgA JDDGAC_21535 0.82 +0.2 4,126,520 - mtgA JDDGAC_21535 0.82 +0.2 4,126,520 - mtgA JDDGAC_21535 0.82 -1.2 4,126,522 + mtgA JDDGAC_21535 0.82 +0.4 4,126,522 + mtgA JDDGAC_21535 0.82 +0.1 4,126,526 + mtgA JDDGAC_21535 0.83 +0.3 4,126,526 + mtgA JDDGAC_21535 0.83 -2.8 4,126,564 - mtgA JDDGAC_21535 0.88 -0.7 4,126,603 - +0.2 4,126,603 - -1.6 4,126,603 - -2.9 4,126,609 + -0.9 4,126,873 + yrbL JDDGAC_21540 0.36 +0.4
Or see this region's nucleotide sequence