Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19895

Experiment: WM_K30

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_K30
3,810,256	+	gadX	JDDGAC_19885	0.26	-0.0
3,810,256	+	gadX	JDDGAC_19885	0.26	+0.4
3,810,353	+	gadX	JDDGAC_19885	0.37	-0.7
3,810,354	-	gadX	JDDGAC_19885	0.37	+0.4
3,810,395	-	gadX	JDDGAC_19885	0.42	-1.9
3,810,461	-	gadX	JDDGAC_19885	0.50	+0.4
3,810,489	-	gadX	JDDGAC_19885	0.54	+0.4
3,810,503	+	gadX	JDDGAC_19885	0.56	+0.2
3,810,569	-	gadX	JDDGAC_19885	0.64	+1.8
3,810,656	-	gadX	JDDGAC_19885	0.74	-0.2
3,810,671	+	gadX	JDDGAC_19885	0.76	+0.9
3,810,720	+	gadX	JDDGAC_19885	0.82	+1.4
3,810,720	+	gadX	JDDGAC_19885	0.82	+1.1
3,810,738	+	gadX	JDDGAC_19885	0.84	-2.0
3,810,866	-				+0.9
3,810,875	+				-1.2
3,810,876	-				+1.6
3,810,952	+				-2.4
3,810,952	+				+0.2
3,810,953	-				-3.9
3,811,038	+				-0.7
3,811,044	+				-1.1
3,811,050	-				-0.5
3,811,188	+				+0.4
3,811,189	-				-0.5
3,811,191	+				+0.7
3,811,192	-				-1.0
3,811,286	-				+0.5
3,811,323	+	gadW	JDDGAC_19895	0.12	-1.6
3,811,324	-	gadW	JDDGAC_19895	0.12	-1.1
3,811,324	-	gadW	JDDGAC_19895	0.12	+1.5
3,811,421	+	gadW	JDDGAC_19895	0.25	-1.9
3,811,422	-	gadW	JDDGAC_19895	0.25	-1.3
3,811,439	+	gadW	JDDGAC_19895	0.28	-1.1
3,811,457	+	gadW	JDDGAC_19895	0.30	-1.5
3,811,457	+	gadW	JDDGAC_19895	0.30	-1.2
3,811,458	-	gadW	JDDGAC_19895	0.30	-1.8
3,811,458	-	gadW	JDDGAC_19895	0.30	-1.3
3,811,566	+	gadW	JDDGAC_19895	0.45	-2.4
3,811,567	-	gadW	JDDGAC_19895	0.45	-3.0
3,811,573	+	gadW	JDDGAC_19895	0.46	-3.5
3,811,672	-	gadW	JDDGAC_19895	0.60	-4.1
3,811,724	-	gadW	JDDGAC_19895	0.67	-1.9
3,811,820	+	gadW	JDDGAC_19895	0.80	-1.0
3,811,848	+	gadW	JDDGAC_19895	0.84	-2.2
3,811,848	+	gadW	JDDGAC_19895	0.84	+0.2
3,811,851	+	gadW	JDDGAC_19895	0.84	-2.4
3,811,852	-	gadW	JDDGAC_19895	0.84	-1.7
3,811,872	+	gadW	JDDGAC_19895	0.87	-2.5
3,811,873	-	gadW	JDDGAC_19895	0.87	-1.6
3,811,873	-	gadW	JDDGAC_19895	0.87	+0.8
3,811,878	+	gadW	JDDGAC_19895	0.88	-0.3
3,811,878	+	gadW	JDDGAC_19895	0.88	-1.8
3,811,886	-	gadW	JDDGAC_19895	0.89	-2.6
3,811,892	+	gadW	JDDGAC_19895	0.90	+0.2
3,811,912	+				-1.8
3,811,919	+				-1.2
3,811,953	+				-0.8
3,812,163	+		JDDGAC_19900	0.19	+0.3
3,812,164	-		JDDGAC_19900	0.19	-0.7
3,812,206	+		JDDGAC_19900	0.34	-0.8
3,812,222	+		JDDGAC_19900	0.40	+0.1
3,812,225	+		JDDGAC_19900	0.41	-0.9
3,812,226	-		JDDGAC_19900	0.41	-0.4
3,812,226	-		JDDGAC_19900	0.41	+0.4
3,812,247	+		JDDGAC_19900	0.49	-0.6
3,812,287	-		JDDGAC_19900	0.63	+0.2
3,812,323	-		JDDGAC_19900	0.76	-0.2
3,812,364	+				+1.3
3,812,389	+				+0.1
3,812,671	+	mdtF	JDDGAC_19905	0.11	-1.2
3,812,672	-	mdtF	JDDGAC_19905	0.11	-0.1
3,812,681	+	mdtF	JDDGAC_19905	0.11	+1.7
3,812,682	-	mdtF	JDDGAC_19905	0.11	+1.1
3,812,682	-	mdtF	JDDGAC_19905	0.11	-4.5
3,812,686	-	mdtF	JDDGAC_19905	0.11	+1.2
3,812,686	-	mdtF	JDDGAC_19905	0.11	+1.8
3,812,710	-	mdtF	JDDGAC_19905	0.12	-0.6
3,812,774	-	mdtF	JDDGAC_19905	0.14	+0.6