Strain Fitness in Escherichia coli ECRC98 around JDDGAC_13910

Experiment: WM_K30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfhuB and fhuD overlap by 4 nucleotidesfhuD and fhuC overlap by 1 nucleotidesfhuC and fhuA are separated by 50 nucleotides JDDGAC_13900: fhuB - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 2,568,217 to 2,570,199 fhuB JDDGAC_13905: fhuD - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 2,570,196 to 2,571,086 fhuD JDDGAC_13910: fhuC - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 2,571,086 to 2,571,883 fhuC JDDGAC_13915: fhuA - ferrichrome porin FhuA, at 2,571,934 to 2,574,177 fhuA Position (kb) 2571 2572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2570.168 kb on - strandat 2570.168 kb on - strandat 2570.204 kb on + strandat 2570.205 kb on - strandat 2570.263 kb on + strandat 2570.264 kb on - strandat 2570.396 kb on + strand, within fhuDat 2570.396 kb on + strand, within fhuDat 2570.398 kb on + strand, within fhuDat 2570.399 kb on - strand, within fhuDat 2570.525 kb on + strand, within fhuDat 2570.526 kb on - strand, within fhuDat 2570.614 kb on + strand, within fhuDat 2570.614 kb on + strand, within fhuDat 2570.651 kb on + strand, within fhuDat 2570.656 kb on - strand, within fhuDat 2570.656 kb on - strand, within fhuDat 2570.656 kb on - strand, within fhuDat 2570.681 kb on + strand, within fhuDat 2570.682 kb on - strand, within fhuDat 2570.742 kb on - strand, within fhuDat 2570.825 kb on + strand, within fhuDat 2570.826 kb on - strand, within fhuDat 2570.866 kb on - strand, within fhuDat 2570.893 kb on + strand, within fhuDat 2570.893 kb on + strand, within fhuDat 2570.893 kb on + strand, within fhuDat 2570.894 kb on - strand, within fhuDat 2570.940 kb on + strand, within fhuDat 2570.941 kb on - strand, within fhuDat 2570.943 kb on + strand, within fhuDat 2570.944 kb on - strand, within fhuDat 2570.975 kb on + strand, within fhuDat 2571.068 kb on + strandat 2571.075 kb on + strandat 2571.150 kb on + strandat 2571.151 kb on - strandat 2571.306 kb on - strand, within fhuCat 2571.474 kb on - strand, within fhuCat 2571.490 kb on + strand, within fhuCat 2571.533 kb on + strand, within fhuCat 2571.618 kb on + strand, within fhuCat 2571.836 kb on - strandat 2571.838 kb on + strandat 2571.838 kb on + strandat 2571.839 kb on - strandat 2571.873 kb on + strandat 2571.874 kb on - strandat 2571.883 kb on + strandat 2571.936 kb on - strandat 2571.992 kb on + strandat 2571.993 kb on - strandat 2571.993 kb on - strandat 2572.151 kb on + strandat 2572.151 kb on + strandat 2572.164 kb on + strand, within fhuAat 2572.164 kb on + strand, within fhuAat 2572.165 kb on - strand, within fhuAat 2572.165 kb on - strand, within fhuAat 2572.165 kb on - strand, within fhuAat 2572.166 kb on + strand, within fhuAat 2572.167 kb on - strand, within fhuAat 2572.219 kb on - strand, within fhuAat 2572.220 kb on + strand, within fhuAat 2572.220 kb on + strand, within fhuAat 2572.221 kb on - strand, within fhuAat 2572.221 kb on - strand, within fhuAat 2572.267 kb on - strand, within fhuAat 2572.275 kb on + strand, within fhuAat 2572.276 kb on - strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.277 kb on + strand, within fhuAat 2572.278 kb on - strand, within fhuAat 2572.281 kb on + strand, within fhuAat 2572.295 kb on + strand, within fhuAat 2572.295 kb on + strand, within fhuAat 2572.310 kb on + strand, within fhuAat 2572.310 kb on + strand, within fhuAat 2572.311 kb on - strand, within fhuAat 2572.315 kb on - strand, within fhuAat 2572.315 kb on - strand, within fhuAat 2572.316 kb on + strand, within fhuAat 2572.317 kb on - strand, within fhuAat 2572.456 kb on - strand, within fhuAat 2572.456 kb on - strand, within fhuAat 2572.456 kb on - strand, within fhuAat 2572.456 kb on - strand, within fhuAat 2572.457 kb on + strand, within fhuAat 2572.458 kb on - strand, within fhuAat 2572.475 kb on - strand, within fhuAat 2572.500 kb on - strand, within fhuAat 2572.518 kb on - strand, within fhuAat 2572.524 kb on + strand, within fhuAat 2572.530 kb on + strand, within fhuAat 2572.545 kb on + strand, within fhuAat 2572.546 kb on - strand, within fhuAat 2572.596 kb on + strand, within fhuAat 2572.597 kb on - strand, within fhuAat 2572.597 kb on - strand, within fhuAat 2572.601 kb on + strand, within fhuAat 2572.601 kb on + strand, within fhuAat 2572.610 kb on - strand, within fhuAat 2572.617 kb on + strand, within fhuAat 2572.628 kb on + strand, within fhuAat 2572.628 kb on + strand, within fhuAat 2572.628 kb on + strand, within fhuAat 2572.629 kb on - strand, within fhuAat 2572.629 kb on - strand, within fhuAat 2572.632 kb on + strand, within fhuAat 2572.632 kb on + strand, within fhuAat 2572.633 kb on - strand, within fhuAat 2572.633 kb on - strand, within fhuAat 2572.650 kb on + strand, within fhuAat 2572.651 kb on - strand, within fhuAat 2572.721 kb on + strand, within fhuAat 2572.775 kb on + strand, within fhuAat 2572.775 kb on + strand, within fhuAat 2572.798 kb on - strand, within fhuA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
remove
2,570,168 - -0.9
2,570,168 - -2.3
2,570,204 + +0.5
2,570,205 - +0.4
2,570,263 + -0.8
2,570,264 - -2.3
2,570,396 + fhuD JDDGAC_13905 0.22 -1.6
2,570,396 + fhuD JDDGAC_13905 0.22 +0.7
2,570,398 + fhuD JDDGAC_13905 0.23 +1.4
2,570,399 - fhuD JDDGAC_13905 0.23 -0.6
2,570,525 + fhuD JDDGAC_13905 0.37 -0.4
2,570,526 - fhuD JDDGAC_13905 0.37 -0.0
2,570,614 + fhuD JDDGAC_13905 0.47 -1.9
2,570,614 + fhuD JDDGAC_13905 0.47 -0.4
2,570,651 + fhuD JDDGAC_13905 0.51 -0.1
2,570,656 - fhuD JDDGAC_13905 0.52 -2.9
2,570,656 - fhuD JDDGAC_13905 0.52 +0.2
2,570,656 - fhuD JDDGAC_13905 0.52 +0.9
2,570,681 + fhuD JDDGAC_13905 0.54 -1.4
2,570,682 - fhuD JDDGAC_13905 0.55 -1.7
2,570,742 - fhuD JDDGAC_13905 0.61 -0.1
2,570,825 + fhuD JDDGAC_13905 0.71 -0.4
2,570,826 - fhuD JDDGAC_13905 0.71 +0.8
2,570,866 - fhuD JDDGAC_13905 0.75 -0.5
2,570,893 + fhuD JDDGAC_13905 0.78 +0.1
2,570,893 + fhuD JDDGAC_13905 0.78 +0.1
2,570,893 + fhuD JDDGAC_13905 0.78 -0.0
2,570,894 - fhuD JDDGAC_13905 0.78 +0.5
2,570,940 + fhuD JDDGAC_13905 0.84 +1.0
2,570,941 - fhuD JDDGAC_13905 0.84 -0.3
2,570,943 + fhuD JDDGAC_13905 0.84 -0.7
2,570,944 - fhuD JDDGAC_13905 0.84 +1.2
2,570,975 + fhuD JDDGAC_13905 0.87 +0.1
2,571,068 + -4.6
2,571,075 + +0.7
2,571,150 + -0.9
2,571,151 - -0.3
2,571,306 - fhuC JDDGAC_13910 0.28 +0.2
2,571,474 - fhuC JDDGAC_13910 0.49 -1.1
2,571,490 + fhuC JDDGAC_13910 0.51 -1.0
2,571,533 + fhuC JDDGAC_13910 0.56 -1.3
2,571,618 + fhuC JDDGAC_13910 0.67 -0.8
2,571,836 - -1.4
2,571,838 + +1.3
2,571,838 + -4.1
2,571,839 - +0.3
2,571,873 + -0.3
2,571,874 - -0.3
2,571,883 + -0.1
2,571,936 - -1.8
2,571,992 + -0.2
2,571,993 - +1.4
2,571,993 - +0.5
2,572,151 + -0.3
2,572,151 + +0.5
2,572,164 + fhuA JDDGAC_13915 0.10 -0.0
2,572,164 + fhuA JDDGAC_13915 0.10 +1.1
2,572,165 - fhuA JDDGAC_13915 0.10 +1.8
2,572,165 - fhuA JDDGAC_13915 0.10 +0.8
2,572,165 - fhuA JDDGAC_13915 0.10 +0.5
2,572,166 + fhuA JDDGAC_13915 0.10 -0.6
2,572,167 - fhuA JDDGAC_13915 0.10 -2.0
2,572,219 - fhuA JDDGAC_13915 0.13 -1.0
2,572,220 + fhuA JDDGAC_13915 0.13 +1.2
2,572,220 + fhuA JDDGAC_13915 0.13 -0.3
2,572,221 - fhuA JDDGAC_13915 0.13 +1.9
2,572,221 - fhuA JDDGAC_13915 0.13 -2.8
2,572,267 - fhuA JDDGAC_13915 0.15 +0.4
2,572,275 + fhuA JDDGAC_13915 0.15 +0.0
2,572,276 - fhuA JDDGAC_13915 0.15 +1.7
2,572,277 + fhuA JDDGAC_13915 0.15 -0.2
2,572,277 + fhuA JDDGAC_13915 0.15 +0.8
2,572,277 + fhuA JDDGAC_13915 0.15 +1.6
2,572,277 + fhuA JDDGAC_13915 0.15 -1.0
2,572,277 + fhuA JDDGAC_13915 0.15 +0.2
2,572,277 + fhuA JDDGAC_13915 0.15 -0.5
2,572,277 + fhuA JDDGAC_13915 0.15 +0.1
2,572,277 + fhuA JDDGAC_13915 0.15 -2.7
2,572,277 + fhuA JDDGAC_13915 0.15 +0.4
2,572,277 + fhuA JDDGAC_13915 0.15 -0.1
2,572,278 - fhuA JDDGAC_13915 0.15 -0.4
2,572,281 + fhuA JDDGAC_13915 0.15 +1.3
2,572,295 + fhuA JDDGAC_13915 0.16 +0.2
2,572,295 + fhuA JDDGAC_13915 0.16 -0.4
2,572,310 + fhuA JDDGAC_13915 0.17 +1.1
2,572,310 + fhuA JDDGAC_13915 0.17 -0.4
2,572,311 - fhuA JDDGAC_13915 0.17 -0.2
2,572,315 - fhuA JDDGAC_13915 0.17 +0.4
2,572,315 - fhuA JDDGAC_13915 0.17 +0.6
2,572,316 + fhuA JDDGAC_13915 0.17 -0.4
2,572,317 - fhuA JDDGAC_13915 0.17 -0.1
2,572,456 - fhuA JDDGAC_13915 0.23 -0.7
2,572,456 - fhuA JDDGAC_13915 0.23 +0.9
2,572,456 - fhuA JDDGAC_13915 0.23 +1.2
2,572,456 - fhuA JDDGAC_13915 0.23 +0.8
2,572,457 + fhuA JDDGAC_13915 0.23 +0.0
2,572,458 - fhuA JDDGAC_13915 0.23 +0.2
2,572,475 - fhuA JDDGAC_13915 0.24 -4.4
2,572,500 - fhuA JDDGAC_13915 0.25 -1.3
2,572,518 - fhuA JDDGAC_13915 0.26 +0.4
2,572,524 + fhuA JDDGAC_13915 0.26 +0.2
2,572,530 + fhuA JDDGAC_13915 0.27 +0.1
2,572,545 + fhuA JDDGAC_13915 0.27 -0.6
2,572,546 - fhuA JDDGAC_13915 0.27 -0.8
2,572,596 + fhuA JDDGAC_13915 0.30 +0.9
2,572,597 - fhuA JDDGAC_13915 0.30 -0.8
2,572,597 - fhuA JDDGAC_13915 0.30 -0.8
2,572,601 + fhuA JDDGAC_13915 0.30 +1.1
2,572,601 + fhuA JDDGAC_13915 0.30 -0.4
2,572,610 - fhuA JDDGAC_13915 0.30 +0.5
2,572,617 + fhuA JDDGAC_13915 0.30 -0.5
2,572,628 + fhuA JDDGAC_13915 0.31 -0.9
2,572,628 + fhuA JDDGAC_13915 0.31 +0.2
2,572,628 + fhuA JDDGAC_13915 0.31 +0.6
2,572,629 - fhuA JDDGAC_13915 0.31 +0.9
2,572,629 - fhuA JDDGAC_13915 0.31 -0.0
2,572,632 + fhuA JDDGAC_13915 0.31 -0.2
2,572,632 + fhuA JDDGAC_13915 0.31 -0.1
2,572,633 - fhuA JDDGAC_13915 0.31 -0.2
2,572,633 - fhuA JDDGAC_13915 0.31 -2.8
2,572,650 + fhuA JDDGAC_13915 0.32 -0.6
2,572,651 - fhuA JDDGAC_13915 0.32 -1.0
2,572,721 + fhuA JDDGAC_13915 0.35 +1.0
2,572,775 + fhuA JDDGAC_13915 0.37 -0.8
2,572,775 + fhuA JDDGAC_13915 0.37 -0.9
2,572,798 - fhuA JDDGAC_13915 0.39 +0.5

Or see this region's nucleotide sequence