Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fhuB and fhuD overlap by 4 nucleotides fhuD and fhuC overlap by 1 nucleotides fhuC and fhuA are separated by 50 nucleotides
JDDGAC_13900: fhuB - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 2,568,217 to 2,570,199
fhuB
JDDGAC_13905: fhuD - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 2,570,196 to 2,571,086
fhuD
JDDGAC_13910: fhuC - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 2,571,086 to 2,571,883
fhuC
JDDGAC_13915: fhuA - ferrichrome porin FhuA, at 2,571,934 to 2,574,177
fhuA
Position (kb)
2571
2572 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2570.168 kb on - strand at 2570.168 kb on - strand at 2570.204 kb on + strand at 2570.205 kb on - strand at 2570.263 kb on + strand at 2570.264 kb on - strand at 2570.396 kb on + strand, within fhuD at 2570.396 kb on + strand, within fhuD at 2570.398 kb on + strand, within fhuD at 2570.399 kb on - strand, within fhuD at 2570.525 kb on + strand, within fhuD at 2570.526 kb on - strand, within fhuD at 2570.614 kb on + strand, within fhuD at 2570.614 kb on + strand, within fhuD at 2570.651 kb on + strand, within fhuD at 2570.656 kb on - strand, within fhuD at 2570.656 kb on - strand, within fhuD at 2570.656 kb on - strand, within fhuD at 2570.681 kb on + strand, within fhuD at 2570.682 kb on - strand, within fhuD at 2570.742 kb on - strand, within fhuD at 2570.825 kb on + strand, within fhuD at 2570.826 kb on - strand, within fhuD at 2570.866 kb on - strand, within fhuD at 2570.893 kb on + strand, within fhuD at 2570.893 kb on + strand, within fhuD at 2570.893 kb on + strand, within fhuD at 2570.894 kb on - strand, within fhuD at 2570.940 kb on + strand, within fhuD at 2570.941 kb on - strand, within fhuD at 2570.943 kb on + strand, within fhuD at 2570.944 kb on - strand, within fhuD at 2570.975 kb on + strand, within fhuD at 2571.068 kb on + strand at 2571.075 kb on + strand at 2571.150 kb on + strand at 2571.151 kb on - strand at 2571.306 kb on - strand, within fhuC at 2571.474 kb on - strand, within fhuC at 2571.490 kb on + strand, within fhuC at 2571.533 kb on + strand, within fhuC at 2571.618 kb on + strand, within fhuC at 2571.836 kb on - strand at 2571.838 kb on + strand at 2571.838 kb on + strand at 2571.839 kb on - strand at 2571.873 kb on + strand at 2571.874 kb on - strand at 2571.883 kb on + strand at 2571.936 kb on - strand at 2571.992 kb on + strand at 2571.993 kb on - strand at 2571.993 kb on - strand at 2572.151 kb on + strand at 2572.151 kb on + strand at 2572.164 kb on + strand, within fhuA at 2572.164 kb on + strand, within fhuA at 2572.165 kb on - strand, within fhuA at 2572.165 kb on - strand, within fhuA at 2572.165 kb on - strand, within fhuA at 2572.166 kb on + strand, within fhuA at 2572.167 kb on - strand, within fhuA at 2572.219 kb on - strand, within fhuA at 2572.220 kb on + strand, within fhuA at 2572.220 kb on + strand, within fhuA at 2572.221 kb on - strand, within fhuA at 2572.221 kb on - strand, within fhuA at 2572.267 kb on - strand, within fhuA at 2572.275 kb on + strand, within fhuA at 2572.276 kb on - strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.277 kb on + strand, within fhuA at 2572.278 kb on - strand, within fhuA at 2572.281 kb on + strand, within fhuA at 2572.295 kb on + strand, within fhuA at 2572.295 kb on + strand, within fhuA at 2572.310 kb on + strand, within fhuA at 2572.310 kb on + strand, within fhuA at 2572.311 kb on - strand, within fhuA at 2572.315 kb on - strand, within fhuA at 2572.315 kb on - strand, within fhuA at 2572.316 kb on + strand, within fhuA at 2572.317 kb on - strand, within fhuA at 2572.456 kb on - strand, within fhuA at 2572.456 kb on - strand, within fhuA at 2572.456 kb on - strand, within fhuA at 2572.456 kb on - strand, within fhuA at 2572.457 kb on + strand, within fhuA at 2572.458 kb on - strand, within fhuA at 2572.475 kb on - strand, within fhuA at 2572.500 kb on - strand, within fhuA at 2572.518 kb on - strand, within fhuA at 2572.524 kb on + strand, within fhuA at 2572.530 kb on + strand, within fhuA at 2572.545 kb on + strand, within fhuA at 2572.546 kb on - strand, within fhuA at 2572.596 kb on + strand, within fhuA at 2572.597 kb on - strand, within fhuA at 2572.597 kb on - strand, within fhuA at 2572.601 kb on + strand, within fhuA at 2572.601 kb on + strand, within fhuA at 2572.610 kb on - strand, within fhuA at 2572.617 kb on + strand, within fhuA at 2572.628 kb on + strand, within fhuA at 2572.628 kb on + strand, within fhuA at 2572.628 kb on + strand, within fhuA at 2572.629 kb on - strand, within fhuA at 2572.629 kb on - strand, within fhuA at 2572.632 kb on + strand, within fhuA at 2572.632 kb on + strand, within fhuA at 2572.633 kb on - strand, within fhuA at 2572.633 kb on - strand, within fhuA at 2572.650 kb on + strand, within fhuA at 2572.651 kb on - strand, within fhuA at 2572.721 kb on + strand, within fhuA at 2572.775 kb on + strand, within fhuA at 2572.775 kb on + strand, within fhuA at 2572.798 kb on - strand, within fhuA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 2,570,168 - -0.9 2,570,168 - -2.3 2,570,204 + +0.5 2,570,205 - +0.4 2,570,263 + -0.8 2,570,264 - -2.3 2,570,396 + fhuD JDDGAC_13905 0.22 -1.6 2,570,396 + fhuD JDDGAC_13905 0.22 +0.7 2,570,398 + fhuD JDDGAC_13905 0.23 +1.4 2,570,399 - fhuD JDDGAC_13905 0.23 -0.6 2,570,525 + fhuD JDDGAC_13905 0.37 -0.4 2,570,526 - fhuD JDDGAC_13905 0.37 -0.0 2,570,614 + fhuD JDDGAC_13905 0.47 -1.9 2,570,614 + fhuD JDDGAC_13905 0.47 -0.4 2,570,651 + fhuD JDDGAC_13905 0.51 -0.1 2,570,656 - fhuD JDDGAC_13905 0.52 -2.9 2,570,656 - fhuD JDDGAC_13905 0.52 +0.2 2,570,656 - fhuD JDDGAC_13905 0.52 +0.9 2,570,681 + fhuD JDDGAC_13905 0.54 -1.4 2,570,682 - fhuD JDDGAC_13905 0.55 -1.7 2,570,742 - fhuD JDDGAC_13905 0.61 -0.1 2,570,825 + fhuD JDDGAC_13905 0.71 -0.4 2,570,826 - fhuD JDDGAC_13905 0.71 +0.8 2,570,866 - fhuD JDDGAC_13905 0.75 -0.5 2,570,893 + fhuD JDDGAC_13905 0.78 +0.1 2,570,893 + fhuD JDDGAC_13905 0.78 +0.1 2,570,893 + fhuD JDDGAC_13905 0.78 -0.0 2,570,894 - fhuD JDDGAC_13905 0.78 +0.5 2,570,940 + fhuD JDDGAC_13905 0.84 +1.0 2,570,941 - fhuD JDDGAC_13905 0.84 -0.3 2,570,943 + fhuD JDDGAC_13905 0.84 -0.7 2,570,944 - fhuD JDDGAC_13905 0.84 +1.2 2,570,975 + fhuD JDDGAC_13905 0.87 +0.1 2,571,068 + -4.6 2,571,075 + +0.7 2,571,150 + -0.9 2,571,151 - -0.3 2,571,306 - fhuC JDDGAC_13910 0.28 +0.2 2,571,474 - fhuC JDDGAC_13910 0.49 -1.1 2,571,490 + fhuC JDDGAC_13910 0.51 -1.0 2,571,533 + fhuC JDDGAC_13910 0.56 -1.3 2,571,618 + fhuC JDDGAC_13910 0.67 -0.8 2,571,836 - -1.4 2,571,838 + +1.3 2,571,838 + -4.1 2,571,839 - +0.3 2,571,873 + -0.3 2,571,874 - -0.3 2,571,883 + -0.1 2,571,936 - -1.8 2,571,992 + -0.2 2,571,993 - +1.4 2,571,993 - +0.5 2,572,151 + -0.3 2,572,151 + +0.5 2,572,164 + fhuA JDDGAC_13915 0.10 -0.0 2,572,164 + fhuA JDDGAC_13915 0.10 +1.1 2,572,165 - fhuA JDDGAC_13915 0.10 +1.8 2,572,165 - fhuA JDDGAC_13915 0.10 +0.8 2,572,165 - fhuA JDDGAC_13915 0.10 +0.5 2,572,166 + fhuA JDDGAC_13915 0.10 -0.6 2,572,167 - fhuA JDDGAC_13915 0.10 -2.0 2,572,219 - fhuA JDDGAC_13915 0.13 -1.0 2,572,220 + fhuA JDDGAC_13915 0.13 +1.2 2,572,220 + fhuA JDDGAC_13915 0.13 -0.3 2,572,221 - fhuA JDDGAC_13915 0.13 +1.9 2,572,221 - fhuA JDDGAC_13915 0.13 -2.8 2,572,267 - fhuA JDDGAC_13915 0.15 +0.4 2,572,275 + fhuA JDDGAC_13915 0.15 +0.0 2,572,276 - fhuA JDDGAC_13915 0.15 +1.7 2,572,277 + fhuA JDDGAC_13915 0.15 -0.2 2,572,277 + fhuA JDDGAC_13915 0.15 +0.8 2,572,277 + fhuA JDDGAC_13915 0.15 +1.6 2,572,277 + fhuA JDDGAC_13915 0.15 -1.0 2,572,277 + fhuA JDDGAC_13915 0.15 +0.2 2,572,277 + fhuA JDDGAC_13915 0.15 -0.5 2,572,277 + fhuA JDDGAC_13915 0.15 +0.1 2,572,277 + fhuA JDDGAC_13915 0.15 -2.7 2,572,277 + fhuA JDDGAC_13915 0.15 +0.4 2,572,277 + fhuA JDDGAC_13915 0.15 -0.1 2,572,278 - fhuA JDDGAC_13915 0.15 -0.4 2,572,281 + fhuA JDDGAC_13915 0.15 +1.3 2,572,295 + fhuA JDDGAC_13915 0.16 +0.2 2,572,295 + fhuA JDDGAC_13915 0.16 -0.4 2,572,310 + fhuA JDDGAC_13915 0.17 +1.1 2,572,310 + fhuA JDDGAC_13915 0.17 -0.4 2,572,311 - fhuA JDDGAC_13915 0.17 -0.2 2,572,315 - fhuA JDDGAC_13915 0.17 +0.4 2,572,315 - fhuA JDDGAC_13915 0.17 +0.6 2,572,316 + fhuA JDDGAC_13915 0.17 -0.4 2,572,317 - fhuA JDDGAC_13915 0.17 -0.1 2,572,456 - fhuA JDDGAC_13915 0.23 -0.7 2,572,456 - fhuA JDDGAC_13915 0.23 +0.9 2,572,456 - fhuA JDDGAC_13915 0.23 +1.2 2,572,456 - fhuA JDDGAC_13915 0.23 +0.8 2,572,457 + fhuA JDDGAC_13915 0.23 +0.0 2,572,458 - fhuA JDDGAC_13915 0.23 +0.2 2,572,475 - fhuA JDDGAC_13915 0.24 -4.4 2,572,500 - fhuA JDDGAC_13915 0.25 -1.3 2,572,518 - fhuA JDDGAC_13915 0.26 +0.4 2,572,524 + fhuA JDDGAC_13915 0.26 +0.2 2,572,530 + fhuA JDDGAC_13915 0.27 +0.1 2,572,545 + fhuA JDDGAC_13915 0.27 -0.6 2,572,546 - fhuA JDDGAC_13915 0.27 -0.8 2,572,596 + fhuA JDDGAC_13915 0.30 +0.9 2,572,597 - fhuA JDDGAC_13915 0.30 -0.8 2,572,597 - fhuA JDDGAC_13915 0.30 -0.8 2,572,601 + fhuA JDDGAC_13915 0.30 +1.1 2,572,601 + fhuA JDDGAC_13915 0.30 -0.4 2,572,610 - fhuA JDDGAC_13915 0.30 +0.5 2,572,617 + fhuA JDDGAC_13915 0.30 -0.5 2,572,628 + fhuA JDDGAC_13915 0.31 -0.9 2,572,628 + fhuA JDDGAC_13915 0.31 +0.2 2,572,628 + fhuA JDDGAC_13915 0.31 +0.6 2,572,629 - fhuA JDDGAC_13915 0.31 +0.9 2,572,629 - fhuA JDDGAC_13915 0.31 -0.0 2,572,632 + fhuA JDDGAC_13915 0.31 -0.2 2,572,632 + fhuA JDDGAC_13915 0.31 -0.1 2,572,633 - fhuA JDDGAC_13915 0.31 -0.2 2,572,633 - fhuA JDDGAC_13915 0.31 -2.8 2,572,650 + fhuA JDDGAC_13915 0.32 -0.6 2,572,651 - fhuA JDDGAC_13915 0.32 -1.0 2,572,721 + fhuA JDDGAC_13915 0.35 +1.0 2,572,775 + fhuA JDDGAC_13915 0.37 -0.8 2,572,775 + fhuA JDDGAC_13915 0.37 -0.9 2,572,798 - fhuA JDDGAC_13915 0.39 +0.5
Or see this region's nucleotide sequence