Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tqsA and mdtJ are separated by 411 nucleotides mdtJ and mdtI overlap by 14 nucleotides mdtI and ydgD are separated by 38 nucleotides ydgD and ydgU are separated by 99 nucleotides
JDDGAC_02290: tqsA - AI-2 transporter TqsA, at 415,805 to 416,839
tqsA
JDDGAC_02295: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 417,251 to 417,616
mdtJ
JDDGAC_02300: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 417,603 to 417,932
mdtI
JDDGAC_02305: ydgD - Uncharacterized serine protease YdgD, at 417,971 to 418,792
ydgD
JDDGAC_02310: ydgU - Uncharacterized protein YdgU, at 418,892 to 418,975
ydgU
Position (kb) 417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 416.718 kb on - strand, within tqsA at 416.871 kb on - strand at 416.874 kb on - strand at 416.996 kb on + strand at 417.102 kb on + strand at 417.795 kb on + strand, within mdtI at 417.872 kb on + strand, within mdtI at 417.973 kb on - strand at 418.102 kb on + strand, within ydgD at 418.206 kb on + strand, within ydgD at 418.253 kb on - strand, within ydgD at 418.292 kb on - strand, within ydgD at 418.292 kb on - strand, within ydgD at 418.337 kb on - strand, within ydgD at 418.383 kb on - strand, within ydgD at 418.446 kb on - strand, within ydgD at 418.446 kb on - strand, within ydgD at 418.585 kb on + strand, within ydgD at 418.786 kb on + strand at 418.787 kb on - strand at 418.787 kb on - strand at 418.787 kb on - strand at 418.792 kb on + strand at 418.813 kb on + strand at 418.842 kb on + strand at 418.843 kb on - strand at 418.887 kb on + strand at 418.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 416,718 - tqsA JDDGAC_02290 0.88 -1.3 416,871 - -0.4 416,874 - +0.5 416,996 + -1.3 417,102 + +0.1 417,795 + mdtI JDDGAC_02300 0.58 -1.0 417,872 + mdtI JDDGAC_02300 0.82 -3.2 417,973 - -2.3 418,102 + ydgD JDDGAC_02305 0.16 -0.4 418,206 + ydgD JDDGAC_02305 0.29 -2.7 418,253 - ydgD JDDGAC_02305 0.34 -1.1 418,292 - ydgD JDDGAC_02305 0.39 +1.3 418,292 - ydgD JDDGAC_02305 0.39 +0.9 418,337 - ydgD JDDGAC_02305 0.45 -0.8 418,383 - ydgD JDDGAC_02305 0.50 -0.7 418,446 - ydgD JDDGAC_02305 0.58 -1.1 418,446 - ydgD JDDGAC_02305 0.58 -0.9 418,585 + ydgD JDDGAC_02305 0.75 -0.6 418,786 + -2.1 418,787 - -0.0 418,787 - -0.7 418,787 - -2.1 418,792 + +0.3 418,813 + +1.3 418,842 + +1.2 418,843 - -1.1 418,887 + -2.3 418,887 + -0.1
Or see this region's nucleotide sequence