Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01690

Experiment: WM_K30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbtuE and btuD overlap by 1 nucleotidesbtuD and nlpC are separated by 77 nucleotidesnlpC and ydiV are separated by 246 nucleotides JDDGAC_01680: btuE - bifunctional thioredoxin/glutathione peroxidase, at 295,417 to 295,968 btuE JDDGAC_01685: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 295,968 to 296,717 btuD JDDGAC_01690: nlpC - putative endopeptidase NlpC, at 296,795 to 297,259 nlpC JDDGAC_01695: ydiV - anti-FlhDC factor, at 297,506 to 298,219 ydiV Position (kb) 296 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 295.966 kb on + strandat 295.973 kb on + strandat 295.973 kb on + strandat 295.987 kb on + strandat 296.088 kb on - strand, within btuDat 296.092 kb on + strand, within btuDat 296.092 kb on + strand, within btuDat 296.727 kb on + strandat 297.142 kb on - strand, within nlpCat 297.169 kb on + strand, within nlpCat 297.214 kb on + strandat 297.257 kb on + strandat 297.258 kb on - strandat 297.260 kb on + strandat 297.441 kb on - strandat 297.739 kb on + strand, within ydiVat 297.819 kb on + strand, within ydiVat 298.049 kb on - strand, within ydiVat 298.188 kb on + strandat 298.197 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
remove
295,966 + +0.3
295,973 + -0.3
295,973 + +0.2
295,987 + -0.8
296,088 - btuD JDDGAC_01685 0.16 -1.5
296,092 + btuD JDDGAC_01685 0.17 +0.1
296,092 + btuD JDDGAC_01685 0.17 -1.6
296,727 + +1.2
297,142 - nlpC JDDGAC_01690 0.75 -1.1
297,169 + nlpC JDDGAC_01690 0.80 -1.6
297,214 + +2.1
297,257 + -1.5
297,258 - -0.6
297,260 + -0.8
297,441 - +0.2
297,739 + ydiV JDDGAC_01695 0.33 -2.9
297,819 + ydiV JDDGAC_01695 0.44 -2.2
298,049 - ydiV JDDGAC_01695 0.76 -3.7
298,188 + +1.6
298,197 + -1.5

Or see this region's nucleotide sequence