Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaA and tsaB are separated by 57 nucleotides tsaB and yeaY are separated by 39 nucleotides yeaY and fadD are separated by 138 nucleotides
JDDGAC_01155: yoaA - putative ATP-dependent DNA helicase YoaA, at 194,175 to 196,085
yoaA
JDDGAC_01160: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 196,143 to 196,838
tsaB
JDDGAC_01165: yeaY - Slp family lipoprotein YeaY, at 196,878 to 197,459
yeaY
JDDGAC_01170: fadD - long-chain-fatty-acid--CoA ligase FadD, at 197,598 to 199,349
fadD
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1 at 196.083 kb on + strand at 196.795 kb on + strand at 196.843 kb on + strand at 196.849 kb on + strand at 196.850 kb on - strand at 196.919 kb on + strand at 196.920 kb on - strand at 197.323 kb on + strand, within yeaY at 197.339 kb on + strand, within yeaY at 197.370 kb on + strand, within yeaY at 197.415 kb on + strand at 197.415 kb on + strand at 197.437 kb on + strand at 197.438 kb on - strand at 197.450 kb on - strand at 197.566 kb on + strand at 197.740 kb on + strand at 197.741 kb on - strand at 197.744 kb on + strand at 198.015 kb on - strand, within fadD at 198.155 kb on + strand, within fadD at 198.171 kb on + strand, within fadD at 198.171 kb on + strand, within fadD at 198.172 kb on - strand, within fadD at 198.354 kb on - strand, within fadD at 198.388 kb on - strand, within fadD
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 196,083 + -1.3 196,795 + -2.2 196,843 + -0.0 196,849 + +1.2 196,850 - +0.3 196,919 + -2.3 196,920 - -1.9 197,323 + yeaY JDDGAC_01165 0.76 -1.2 197,339 + yeaY JDDGAC_01165 0.79 -2.3 197,370 + yeaY JDDGAC_01165 0.85 +0.3 197,415 + -0.2 197,415 + -0.0 197,437 + -0.2 197,438 - +0.1 197,450 - +0.3 197,566 + -0.5 197,740 + +0.7 197,741 - +1.1 197,744 + +0.5 198,015 - fadD JDDGAC_01170 0.24 +0.8 198,155 + fadD JDDGAC_01170 0.32 -1.5 198,171 + fadD JDDGAC_01170 0.33 -0.9 198,171 + fadD JDDGAC_01170 0.33 -1.1 198,172 - fadD JDDGAC_01170 0.33 -1.5 198,354 - fadD JDDGAC_01170 0.43 +0.8 198,388 - fadD JDDGAC_01170 0.45 +0.1
Or see this region's nucleotide sequence