Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00190

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcm and vsr overlap by 20 nucleotidesvsr and yedA overlap by 12 nucleotides JDDGAC_00185: dcm - DNA-cytosine methyltransferase, at 32,372 to 33,790 dcm JDDGAC_00190: vsr - VSPR family DNA mismatch endonuclease, at 33,771 to 34,241 vsr JDDGAC_00195: yedA - drug/metabolite exporter YedA, at 34,230 to 35,150 yedA Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 32.782 kb on + strand, within dcmat 32.851 kb on + strand, within dcmat 32.851 kb on + strand, within dcmat 32.851 kb on + strand, within dcmat 32.884 kb on - strand, within dcmat 33.076 kb on + strand, within dcmat 33.077 kb on - strand, within dcmat 33.253 kb on + strand, within dcmat 33.335 kb on + strand, within dcmat 33.362 kb on + strand, within dcmat 33.362 kb on + strand, within dcmat 33.362 kb on + strand, within dcmat 33.363 kb on - strand, within dcmat 33.363 kb on - strand, within dcmat 33.368 kb on + strand, within dcmat 33.454 kb on + strand, within dcmat 33.953 kb on - strand, within vsrat 33.953 kb on - strand, within vsrat 33.999 kb on - strand, within vsrat 34.326 kb on + strand, within yedAat 34.411 kb on + strand, within yedAat 34.418 kb on - strand, within yedAat 34.418 kb on - strand, within yedAat 34.453 kb on - strand, within yedAat 34.456 kb on + strand, within yedAat 34.456 kb on + strand, within yedAat 34.457 kb on - strand, within yedAat 34.457 kb on - strand, within yedAat 34.457 kb on - strand, within yedAat 34.460 kb on + strand, within yedAat 34.460 kb on + strand, within yedAat 34.461 kb on - strand, within yedAat 34.461 kb on - strand, within yedAat 34.461 kb on - strand, within yedAat 34.461 kb on - strand, within yedAat 34.461 kb on - strand, within yedAat 34.462 kb on + strand, within yedAat 34.462 kb on + strand, within yedAat 34.462 kb on + strand, within yedAat 34.462 kb on + strand, within yedAat 34.630 kb on - strand, within yedAat 35.100 kb on - strandat 35.101 kb on + strandat 35.101 kb on + strandat 35.102 kb on - strandat 35.102 kb on - strandat 35.184 kb on + strandat 35.220 kb on + strandat 35.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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32,782 + dcm JDDGAC_00185 0.29 -2.3
32,851 + dcm JDDGAC_00185 0.34 +0.9
32,851 + dcm JDDGAC_00185 0.34 -0.1
32,851 + dcm JDDGAC_00185 0.34 -1.9
32,884 - dcm JDDGAC_00185 0.36 +0.1
33,076 + dcm JDDGAC_00185 0.50 +2.0
33,077 - dcm JDDGAC_00185 0.50 +1.0
33,253 + dcm JDDGAC_00185 0.62 +0.1
33,335 + dcm JDDGAC_00185 0.68 +0.9
33,362 + dcm JDDGAC_00185 0.70 +1.3
33,362 + dcm JDDGAC_00185 0.70 -1.4
33,362 + dcm JDDGAC_00185 0.70 -1.4
33,363 - dcm JDDGAC_00185 0.70 +0.1
33,363 - dcm JDDGAC_00185 0.70 +0.4
33,368 + dcm JDDGAC_00185 0.70 -1.5
33,454 + dcm JDDGAC_00185 0.76 +0.3
33,953 - vsr JDDGAC_00190 0.39 -0.8
33,953 - vsr JDDGAC_00190 0.39 -2.0
33,999 - vsr JDDGAC_00190 0.48 -1.4
34,326 + yedA JDDGAC_00195 0.10 -0.3
34,411 + yedA JDDGAC_00195 0.20 +0.9
34,418 - yedA JDDGAC_00195 0.20 +0.5
34,418 - yedA JDDGAC_00195 0.20 +0.5
34,453 - yedA JDDGAC_00195 0.24 +0.7
34,456 + yedA JDDGAC_00195 0.25 -2.1
34,456 + yedA JDDGAC_00195 0.25 -4.0
34,457 - yedA JDDGAC_00195 0.25 +0.6
34,457 - yedA JDDGAC_00195 0.25 +0.3
34,457 - yedA JDDGAC_00195 0.25 +0.6
34,460 + yedA JDDGAC_00195 0.25 +0.7
34,460 + yedA JDDGAC_00195 0.25 -0.1
34,461 - yedA JDDGAC_00195 0.25 +1.5
34,461 - yedA JDDGAC_00195 0.25 -0.1
34,461 - yedA JDDGAC_00195 0.25 -1.1
34,461 - yedA JDDGAC_00195 0.25 +0.1
34,461 - yedA JDDGAC_00195 0.25 -0.8
34,462 + yedA JDDGAC_00195 0.25 +2.0
34,462 + yedA JDDGAC_00195 0.25 -2.0
34,462 + yedA JDDGAC_00195 0.25 -1.3
34,462 + yedA JDDGAC_00195 0.25 -0.4
34,630 - yedA JDDGAC_00195 0.43 +0.6
35,100 - -3.2
35,101 + +0.0
35,101 + +1.6
35,102 - -0.4
35,102 - -0.7
35,184 + +0.4
35,220 + +1.1
35,220 + +0.1

Or see this region's nucleotide sequence