Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18720

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18715 and LRK53_RS18720 overlap by 14 nucleotidesLRK53_RS18720 and LRK53_RS18725 overlap by 4 nucleotides LRK53_RS18715: LRK53_RS18715 - hypothetical protein, at 131,436 to 132,440 _RS18715 LRK53_RS18720: LRK53_RS18720 - RES domain-containing protein, at 132,427 to 133,146 _RS18720 LRK53_RS18725: LRK53_RS18725 - tyrosine-type recombinase/integrase, at 133,143 to 134,270 _RS18725 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.490 kb on + strandat 132.490 kb on + strandat 132.491 kb on - strandat 132.491 kb on - strandat 132.491 kb on - strandat 132.491 kb on - strandat 132.608 kb on + strand, within LRK53_RS18720at 132.608 kb on + strand, within LRK53_RS18720at 132.609 kb on - strand, within LRK53_RS18720at 132.609 kb on - strand, within LRK53_RS18720at 132.619 kb on + strand, within LRK53_RS18720at 132.619 kb on + strand, within LRK53_RS18720at 132.620 kb on - strand, within LRK53_RS18720at 132.620 kb on - strand, within LRK53_RS18720at 132.620 kb on - strand, within LRK53_RS18720at 132.679 kb on + strand, within LRK53_RS18720at 132.697 kb on + strand, within LRK53_RS18720at 132.697 kb on + strand, within LRK53_RS18720at 132.697 kb on + strand, within LRK53_RS18720at 132.697 kb on + strand, within LRK53_RS18720at 132.697 kb on + strand, within LRK53_RS18720at 132.698 kb on - strand, within LRK53_RS18720at 132.698 kb on - strand, within LRK53_RS18720at 132.698 kb on - strand, within LRK53_RS18720at 132.724 kb on + strand, within LRK53_RS18720at 132.725 kb on - strand, within LRK53_RS18720at 132.725 kb on - strand, within LRK53_RS18720at 132.725 kb on - strand, within LRK53_RS18720at 132.964 kb on + strand, within LRK53_RS18720at 132.964 kb on + strand, within LRK53_RS18720at 132.965 kb on - strand, within LRK53_RS18720at 132.965 kb on - strand, within LRK53_RS18720at 132.965 kb on - strand, within LRK53_RS18720at 132.973 kb on + strand, within LRK53_RS18720at 132.973 kb on + strand, within LRK53_RS18720at 132.973 kb on + strand, within LRK53_RS18720at 132.974 kb on - strand, within LRK53_RS18720at 133.142 kb on + strandat 133.142 kb on + strandat 133.142 kb on + strandat 133.143 kb on - strandat 133.143 kb on - strandat 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.341 kb on + strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.342 kb on - strand, within LRK53_RS18725at 133.364 kb on - strand, within LRK53_RS18725at 133.415 kb on + strand, within LRK53_RS18725at 133.458 kb on + strand, within LRK53_RS18725at 133.458 kb on + strand, within LRK53_RS18725at 133.459 kb on - strand, within LRK53_RS18725at 133.459 kb on - strand, within LRK53_RS18725at 133.459 kb on - strand, within LRK53_RS18725at 133.464 kb on + strand, within LRK53_RS18725at 133.464 kb on + strand, within LRK53_RS18725at 133.464 kb on + strand, within LRK53_RS18725at 133.464 kb on + strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.465 kb on - strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.466 kb on + strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.467 kb on - strand, within LRK53_RS18725at 133.605 kb on + strand, within LRK53_RS18725at 133.605 kb on + strand, within LRK53_RS18725at 133.605 kb on + strand, within LRK53_RS18725at 133.605 kb on + strand, within LRK53_RS18725at 133.605 kb on + strand, within LRK53_RS18725at 133.606 kb on - strand, within LRK53_RS18725at 133.606 kb on - strand, within LRK53_RS18725at 133.606 kb on - strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.691 kb on + strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.692 kb on - strand, within LRK53_RS18725at 133.815 kb on + strand, within LRK53_RS18725at 133.979 kb on - strand, within LRK53_RS18725at 134.039 kb on + strand, within LRK53_RS18725at 134.039 kb on + strand, within LRK53_RS18725at 134.039 kb on + strand, within LRK53_RS18725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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132,490 + -1.9
132,490 + +0.2
132,491 - -0.8
132,491 - -1.4
132,491 - +0.2
132,491 - -0.4
132,608 + LRK53_RS18720 0.25 -1.1
132,608 + LRK53_RS18720 0.25 -1.7
132,609 - LRK53_RS18720 0.25 +0.2
132,609 - LRK53_RS18720 0.25 -0.8
132,619 + LRK53_RS18720 0.27 -1.2
132,619 + LRK53_RS18720 0.27 -2.0
132,620 - LRK53_RS18720 0.27 +2.2
132,620 - LRK53_RS18720 0.27 -0.8
132,620 - LRK53_RS18720 0.27 -2.5
132,679 + LRK53_RS18720 0.35 -1.8
132,697 + LRK53_RS18720 0.38 -1.2
132,697 + LRK53_RS18720 0.38 -2.2
132,697 + LRK53_RS18720 0.38 +1.2
132,697 + LRK53_RS18720 0.38 -0.8
132,697 + LRK53_RS18720 0.38 -0.1
132,698 - LRK53_RS18720 0.38 -1.2
132,698 - LRK53_RS18720 0.38 -0.8
132,698 - LRK53_RS18720 0.38 -0.4
132,724 + LRK53_RS18720 0.41 -0.7
132,725 - LRK53_RS18720 0.41 +0.2
132,725 - LRK53_RS18720 0.41 -1.4
132,725 - LRK53_RS18720 0.41 -2.8
132,964 + LRK53_RS18720 0.75 -0.9
132,964 + LRK53_RS18720 0.75 +1.2
132,965 - LRK53_RS18720 0.75 +1.2
132,965 - LRK53_RS18720 0.75 -0.7
132,965 - LRK53_RS18720 0.75 -0.2
132,973 + LRK53_RS18720 0.76 -1.4
132,973 + LRK53_RS18720 0.76 -2.8
132,973 + LRK53_RS18720 0.76 -1.2
132,974 - LRK53_RS18720 0.76 -1.1
133,142 + -1.4
133,142 + -0.4
133,142 + -1.7
133,143 - -0.4
133,143 - -1.2
133,341 + LRK53_RS18725 0.18 +0.2
133,341 + LRK53_RS18725 0.18 -0.9
133,341 + LRK53_RS18725 0.18 -0.7
133,341 + LRK53_RS18725 0.18 -1.4
133,341 + LRK53_RS18725 0.18 -2.3
133,341 + LRK53_RS18725 0.18 -0.3
133,341 + LRK53_RS18725 0.18 -1.2
133,341 + LRK53_RS18725 0.18 -1.1
133,341 + LRK53_RS18725 0.18 -1.4
133,341 + LRK53_RS18725 0.18 +0.7
133,341 + LRK53_RS18725 0.18 -1.4
133,341 + LRK53_RS18725 0.18 -0.5
133,341 + LRK53_RS18725 0.18 -1.8
133,341 + LRK53_RS18725 0.18 -0.4
133,341 + LRK53_RS18725 0.18 -0.4
133,341 + LRK53_RS18725 0.18 -1.1
133,341 + LRK53_RS18725 0.18 -1.8
133,341 + LRK53_RS18725 0.18 -1.7
133,341 + LRK53_RS18725 0.18 -0.4
133,341 + LRK53_RS18725 0.18 -1.0
133,341 + LRK53_RS18725 0.18 -1.4
133,341 + LRK53_RS18725 0.18 -1.4
133,342 - LRK53_RS18725 0.18 -0.6
133,342 - LRK53_RS18725 0.18 -0.4
133,342 - LRK53_RS18725 0.18 -0.8
133,342 - LRK53_RS18725 0.18 -0.7
133,342 - LRK53_RS18725 0.18 -1.7
133,342 - LRK53_RS18725 0.18 -1.3
133,342 - LRK53_RS18725 0.18 -0.2
133,342 - LRK53_RS18725 0.18 -0.7
133,342 - LRK53_RS18725 0.18 -1.2
133,342 - LRK53_RS18725 0.18 +0.3
133,342 - LRK53_RS18725 0.18 -0.4
133,364 - LRK53_RS18725 0.20 +1.2
133,415 + LRK53_RS18725 0.24 -0.7
133,458 + LRK53_RS18725 0.28 -0.4
133,458 + LRK53_RS18725 0.28 -1.4
133,459 - LRK53_RS18725 0.28 -0.2
133,459 - LRK53_RS18725 0.28 +0.2
133,459 - LRK53_RS18725 0.28 +0.2
133,464 + LRK53_RS18725 0.28 -2.4
133,464 + LRK53_RS18725 0.28 -1.4
133,464 + LRK53_RS18725 0.28 +0.7
133,464 + LRK53_RS18725 0.28 +0.2
133,465 - LRK53_RS18725 0.29 +0.2
133,465 - LRK53_RS18725 0.29 -1.8
133,465 - LRK53_RS18725 0.29 +0.2
133,465 - LRK53_RS18725 0.29 -0.7
133,465 - LRK53_RS18725 0.29 -0.4
133,465 - LRK53_RS18725 0.29 -1.4
133,465 - LRK53_RS18725 0.29 -0.8
133,466 + LRK53_RS18725 0.29 -0.8
133,466 + LRK53_RS18725 0.29 -0.7
133,466 + LRK53_RS18725 0.29 -1.1
133,466 + LRK53_RS18725 0.29 -1.3
133,466 + LRK53_RS18725 0.29 -0.8
133,466 + LRK53_RS18725 0.29 -0.5
133,466 + LRK53_RS18725 0.29 +0.2
133,466 + LRK53_RS18725 0.29 +0.2
133,466 + LRK53_RS18725 0.29 -0.7
133,466 + LRK53_RS18725 0.29 +0.4
133,466 + LRK53_RS18725 0.29 -1.8
133,466 + LRK53_RS18725 0.29 -1.7
133,466 + LRK53_RS18725 0.29 -1.3
133,467 - LRK53_RS18725 0.29 -1.2
133,467 - LRK53_RS18725 0.29 -1.5
133,467 - LRK53_RS18725 0.29 +0.4
133,467 - LRK53_RS18725 0.29 -1.3
133,467 - LRK53_RS18725 0.29 -0.7
133,467 - LRK53_RS18725 0.29 +0.2
133,467 - LRK53_RS18725 0.29 -0.7
133,467 - LRK53_RS18725 0.29 -0.2
133,467 - LRK53_RS18725 0.29 +0.2
133,467 - LRK53_RS18725 0.29 +0.2
133,467 - LRK53_RS18725 0.29 -1.7
133,467 - LRK53_RS18725 0.29 -1.7
133,605 + LRK53_RS18725 0.41 -1.2
133,605 + LRK53_RS18725 0.41 -1.7
133,605 + LRK53_RS18725 0.41 -0.8
133,605 + LRK53_RS18725 0.41 +1.2
133,605 + LRK53_RS18725 0.41 -1.7
133,606 - LRK53_RS18725 0.41 -1.5
133,606 - LRK53_RS18725 0.41 -0.4
133,606 - LRK53_RS18725 0.41 -1.4
133,691 + LRK53_RS18725 0.49 -0.9
133,691 + LRK53_RS18725 0.49 +0.6
133,691 + LRK53_RS18725 0.49 -0.4
133,691 + LRK53_RS18725 0.49 +0.9
133,691 + LRK53_RS18725 0.49 -1.7
133,691 + LRK53_RS18725 0.49 -1.7
133,691 + LRK53_RS18725 0.49 -1.7
133,692 - LRK53_RS18725 0.49 -0.8
133,692 - LRK53_RS18725 0.49 -1.4
133,692 - LRK53_RS18725 0.49 -1.4
133,692 - LRK53_RS18725 0.49 +0.2
133,692 - LRK53_RS18725 0.49 +0.2
133,692 - LRK53_RS18725 0.49 -2.2
133,692 - LRK53_RS18725 0.49 -0.8
133,815 + LRK53_RS18725 0.60 -0.8
133,979 - LRK53_RS18725 0.74 -0.8
134,039 + LRK53_RS18725 0.79 -1.1
134,039 + LRK53_RS18725 0.79 -2.4
134,039 + LRK53_RS18725 0.79 -1.3

Or see this region's nucleotide sequence