Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18370

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18360 and LRK53_RS18365 overlap by 1 nucleotidesLRK53_RS18365 and LRK53_RS18370 are separated by 228 nucleotidesLRK53_RS18370 and LRK53_RS18375 are separated by 12 nucleotides LRK53_RS18360: LRK53_RS18360 - AAA family ATPase, at 46,084 to 47,181 _RS18360 LRK53_RS18365: LRK53_RS18365 - hypothetical protein, at 47,181 to 47,837 _RS18365 LRK53_RS18370: LRK53_RS18370 - DUF3150 domain-containing protein, at 48,066 to 49,085 _RS18370 LRK53_RS18375: LRK53_RS18375 - hypothetical protein, at 49,098 to 50,978 _RS18375 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 47.107 kb on + strandat 47.604 kb on + strand, within LRK53_RS18365at 47.798 kb on + strandat 47.798 kb on + strandat 47.799 kb on - strandat 47.799 kb on - strandat 47.799 kb on - strandat 47.799 kb on - strandat 47.799 kb on - strandat 47.845 kb on - strandat 47.845 kb on - strandat 47.845 kb on - strandat 48.065 kb on + strandat 48.413 kb on + strand, within LRK53_RS18370at 48.413 kb on + strand, within LRK53_RS18370at 48.414 kb on - strand, within LRK53_RS18370at 48.414 kb on - strand, within LRK53_RS18370at 48.441 kb on + strand, within LRK53_RS18370at 48.441 kb on + strand, within LRK53_RS18370at 48.772 kb on + strand, within LRK53_RS18370at 48.849 kb on + strand, within LRK53_RS18370at 48.849 kb on + strand, within LRK53_RS18370at 48.927 kb on + strand, within LRK53_RS18370at 48.927 kb on + strand, within LRK53_RS18370at 48.928 kb on - strand, within LRK53_RS18370at 49.083 kb on + strandat 49.084 kb on - strandat 49.135 kb on + strandat 49.135 kb on + strandat 49.135 kb on + strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.265 kb on + strandat 49.266 kb on - strandat 49.266 kb on - strandat 49.296 kb on + strand, within LRK53_RS18375at 49.296 kb on + strand, within LRK53_RS18375at 49.296 kb on + strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.369 kb on - strand, within LRK53_RS18375at 49.418 kb on - strand, within LRK53_RS18375at 49.512 kb on + strand, within LRK53_RS18375at 49.512 kb on + strand, within LRK53_RS18375at 49.513 kb on - strand, within LRK53_RS18375at 49.530 kb on + strand, within LRK53_RS18375at 49.648 kb on - strand, within LRK53_RS18375at 49.761 kb on + strand, within LRK53_RS18375

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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47,107 + +0.2
47,604 + LRK53_RS18365 0.64 -2.0
47,798 + +1.7
47,798 + -1.7
47,799 - +0.2
47,799 - -2.2
47,799 - +0.3
47,799 - -0.4
47,799 - -0.8
47,845 - +0.2
47,845 - +0.6
47,845 - -1.4
48,065 + -1.4
48,413 + LRK53_RS18370 0.34 -0.3
48,413 + LRK53_RS18370 0.34 -0.8
48,414 - LRK53_RS18370 0.34 -0.8
48,414 - LRK53_RS18370 0.34 -1.6
48,441 + LRK53_RS18370 0.37 -2.5
48,441 + LRK53_RS18370 0.37 -0.8
48,772 + LRK53_RS18370 0.69 -0.8
48,849 + LRK53_RS18370 0.77 -0.8
48,849 + LRK53_RS18370 0.77 -0.1
48,927 + LRK53_RS18370 0.84 -1.1
48,927 + LRK53_RS18370 0.84 -1.7
48,928 - LRK53_RS18370 0.85 -1.2
49,083 + -0.8
49,084 - +0.2
49,135 + +0.4
49,135 + -0.7
49,135 + -1.1
49,136 - -0.4
49,136 - -1.8
49,136 - +0.2
49,136 - -1.3
49,265 + -0.8
49,266 - +0.6
49,266 - +0.2
49,296 + LRK53_RS18375 0.11 +0.7
49,296 + LRK53_RS18375 0.11 -0.5
49,296 + LRK53_RS18375 0.11 +0.2
49,297 - LRK53_RS18375 0.11 -0.4
49,297 - LRK53_RS18375 0.11 -0.9
49,297 - LRK53_RS18375 0.11 +1.2
49,297 - LRK53_RS18375 0.11 -0.4
49,297 - LRK53_RS18375 0.11 +0.8
49,297 - LRK53_RS18375 0.11 +0.3
49,297 - LRK53_RS18375 0.11 -1.5
49,297 - LRK53_RS18375 0.11 -0.4
49,352 + LRK53_RS18375 0.14 -0.4
49,352 + LRK53_RS18375 0.14 +0.7
49,352 + LRK53_RS18375 0.14 -1.4
49,353 - LRK53_RS18375 0.14 +0.6
49,353 - LRK53_RS18375 0.14 -0.2
49,353 - LRK53_RS18375 0.14 -0.8
49,369 - LRK53_RS18375 0.14 -0.7
49,418 - LRK53_RS18375 0.17 -0.4
49,512 + LRK53_RS18375 0.22 +1.2
49,512 + LRK53_RS18375 0.22 -0.4
49,513 - LRK53_RS18375 0.22 -0.2
49,530 + LRK53_RS18375 0.23 +0.2
49,648 - LRK53_RS18375 0.29 -0.3
49,761 + LRK53_RS18375 0.35 -1.4

Or see this region's nucleotide sequence