Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06910

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06905 and LRK53_RS06910 are separated by 177 nucleotidesLRK53_RS06910 and LRK53_RS06915 overlap by 4 nucleotidesLRK53_RS06915 and LRK53_RS06920 are separated by 126 nucleotides LRK53_RS06905: LRK53_RS06905 - M13 family peptidase, at 1,559,079 to 1,561,115 _RS06905 LRK53_RS06910: LRK53_RS06910 - GNAT family N-acetyltransferase, at 1,561,293 to 1,561,841 _RS06910 LRK53_RS06915: LRK53_RS06915 - non-heme iron oxygenase ferredoxin subunit, at 1,561,838 to 1,562,152 _RS06915 LRK53_RS06920: LRK53_RS06920 - MipA/OmpV family protein, at 1,562,279 to 1,563,064 _RS06920 Position (kb) 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1560.370 kb on + strand, within LRK53_RS06905at 1560.370 kb on + strand, within LRK53_RS06905at 1560.370 kb on + strand, within LRK53_RS06905at 1560.370 kb on + strand, within LRK53_RS06905at 1560.371 kb on - strand, within LRK53_RS06905at 1560.371 kb on - strand, within LRK53_RS06905at 1560.371 kb on - strand, within LRK53_RS06905at 1560.523 kb on + strand, within LRK53_RS06905at 1560.523 kb on + strand, within LRK53_RS06905at 1560.523 kb on + strand, within LRK53_RS06905at 1560.523 kb on + strand, within LRK53_RS06905at 1560.524 kb on - strand, within LRK53_RS06905at 1560.559 kb on + strand, within LRK53_RS06905at 1560.560 kb on - strand, within LRK53_RS06905at 1560.560 kb on - strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.562 kb on + strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.563 kb on - strand, within LRK53_RS06905at 1560.676 kb on + strand, within LRK53_RS06905at 1560.676 kb on + strand, within LRK53_RS06905at 1560.676 kb on + strand, within LRK53_RS06905at 1560.676 kb on + strand, within LRK53_RS06905at 1560.677 kb on - strand, within LRK53_RS06905at 1560.677 kb on - strand, within LRK53_RS06905at 1560.677 kb on - strand, within LRK53_RS06905at 1560.689 kb on + strand, within LRK53_RS06905at 1560.689 kb on + strand, within LRK53_RS06905at 1560.689 kb on + strand, within LRK53_RS06905at 1560.689 kb on + strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.690 kb on - strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.691 kb on + strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.692 kb on - strand, within LRK53_RS06905at 1560.780 kb on + strand, within LRK53_RS06905at 1560.781 kb on - strand, within LRK53_RS06905at 1560.781 kb on - strand, within LRK53_RS06905at 1560.781 kb on - strand, within LRK53_RS06905at 1560.799 kb on + strand, within LRK53_RS06905at 1560.799 kb on + strand, within LRK53_RS06905at 1560.799 kb on + strand, within LRK53_RS06905at 1560.799 kb on + strand, within LRK53_RS06905at 1560.800 kb on - strand, within LRK53_RS06905at 1560.800 kb on - strand, within LRK53_RS06905at 1560.800 kb on - strand, within LRK53_RS06905at 1560.800 kb on - strand, within LRK53_RS06905at 1560.806 kb on - strand, within LRK53_RS06905at 1561.171 kb on + strandat 1561.172 kb on - strandat 1561.172 kb on - strandat 1561.280 kb on + strandat 1561.280 kb on + strandat 1561.280 kb on + strandat 1561.280 kb on + strandat 1561.280 kb on + strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.281 kb on - strandat 1561.375 kb on - strand, within LRK53_RS06910at 1561.530 kb on - strand, within LRK53_RS06910at 1561.530 kb on - strand, within LRK53_RS06910at 1561.554 kb on + strand, within LRK53_RS06910at 1561.554 kb on + strand, within LRK53_RS06910at 1561.555 kb on - strand, within LRK53_RS06910at 1561.740 kb on + strand, within LRK53_RS06910at 1561.740 kb on + strand, within LRK53_RS06910at 1561.740 kb on + strand, within LRK53_RS06910at 1561.740 kb on + strand, within LRK53_RS06910at 1561.741 kb on - strand, within LRK53_RS06910at 1561.741 kb on - strand, within LRK53_RS06910at 1561.741 kb on - strand, within LRK53_RS06910at 1561.928 kb on + strand, within LRK53_RS06915at 1561.928 kb on + strand, within LRK53_RS06915at 1561.928 kb on + strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.929 kb on - strand, within LRK53_RS06915at 1561.949 kb on + strand, within LRK53_RS06915at 1561.949 kb on + strand, within LRK53_RS06915at 1561.949 kb on + strand, within LRK53_RS06915at 1561.949 kb on + strand, within LRK53_RS06915at 1561.950 kb on - strand, within LRK53_RS06915at 1561.950 kb on - strand, within LRK53_RS06915at 1561.950 kb on - strand, within LRK53_RS06915at 1561.950 kb on - strand, within LRK53_RS06915at 1562.084 kb on + strand, within LRK53_RS06915at 1562.085 kb on - strand, within LRK53_RS06915at 1562.085 kb on - strand, within LRK53_RS06915at 1562.225 kb on - strandat 1562.290 kb on - strandat 1562.331 kb on + strandat 1562.405 kb on - strand, within LRK53_RS06920at 1562.405 kb on - strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.622 kb on + strand, within LRK53_RS06920at 1562.622 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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1,560,370 + LRK53_RS06905 0.63 -0.4
1,560,370 + LRK53_RS06905 0.63 +0.9
1,560,370 + LRK53_RS06905 0.63 -0.1
1,560,370 + LRK53_RS06905 0.63 +0.9
1,560,371 - LRK53_RS06905 0.63 +0.3
1,560,371 - LRK53_RS06905 0.63 -0.9
1,560,371 - LRK53_RS06905 0.63 -0.5
1,560,523 + LRK53_RS06905 0.71 +0.9
1,560,523 + LRK53_RS06905 0.71 +0.4
1,560,523 + LRK53_RS06905 0.71 -0.1
1,560,523 + LRK53_RS06905 0.71 -0.5
1,560,524 - LRK53_RS06905 0.71 -0.7
1,560,559 + LRK53_RS06905 0.73 -1.4
1,560,560 - LRK53_RS06905 0.73 +0.3
1,560,560 - LRK53_RS06905 0.73 +0.1
1,560,562 + LRK53_RS06905 0.73 -1.4
1,560,562 + LRK53_RS06905 0.73 -1.1
1,560,562 + LRK53_RS06905 0.73 -0.5
1,560,562 + LRK53_RS06905 0.73 -1.5
1,560,562 + LRK53_RS06905 0.73 -0.6
1,560,562 + LRK53_RS06905 0.73 +0.9
1,560,562 + LRK53_RS06905 0.73 -0.4
1,560,563 - LRK53_RS06905 0.73 -1.4
1,560,563 - LRK53_RS06905 0.73 -1.1
1,560,563 - LRK53_RS06905 0.73 -0.8
1,560,563 - LRK53_RS06905 0.73 -0.2
1,560,563 - LRK53_RS06905 0.73 -0.1
1,560,563 - LRK53_RS06905 0.73 -1.5
1,560,563 - LRK53_RS06905 0.73 -1.1
1,560,676 + LRK53_RS06905 0.78 -1.2
1,560,676 + LRK53_RS06905 0.78 +0.9
1,560,676 + LRK53_RS06905 0.78 +1.9
1,560,676 + LRK53_RS06905 0.78 +0.9
1,560,677 - LRK53_RS06905 0.78 +1.9
1,560,677 - LRK53_RS06905 0.78 -1.1
1,560,677 - LRK53_RS06905 0.78 +1.9
1,560,689 + LRK53_RS06905 0.79 -0.1
1,560,689 + LRK53_RS06905 0.79 -1.4
1,560,689 + LRK53_RS06905 0.79 -1.4
1,560,689 + LRK53_RS06905 0.79 -1.9
1,560,690 - LRK53_RS06905 0.79 -1.1
1,560,690 - LRK53_RS06905 0.79 -0.8
1,560,690 - LRK53_RS06905 0.79 +0.5
1,560,690 - LRK53_RS06905 0.79 -1.5
1,560,690 - LRK53_RS06905 0.79 +1.2
1,560,690 - LRK53_RS06905 0.79 -0.7
1,560,690 - LRK53_RS06905 0.79 -1.1
1,560,690 - LRK53_RS06905 0.79 +0.5
1,560,691 + LRK53_RS06905 0.79 -1.0
1,560,691 + LRK53_RS06905 0.79 -0.7
1,560,691 + LRK53_RS06905 0.79 +0.9
1,560,691 + LRK53_RS06905 0.79 -1.1
1,560,691 + LRK53_RS06905 0.79 -0.1
1,560,691 + LRK53_RS06905 0.79 +0.3
1,560,691 + LRK53_RS06905 0.79 -0.7
1,560,691 + LRK53_RS06905 0.79 +0.2
1,560,691 + LRK53_RS06905 0.79 -0.9
1,560,691 + LRK53_RS06905 0.79 -0.7
1,560,691 + LRK53_RS06905 0.79 -0.4
1,560,691 + LRK53_RS06905 0.79 -1.7
1,560,692 - LRK53_RS06905 0.79 +0.9
1,560,692 - LRK53_RS06905 0.79 -0.3
1,560,692 - LRK53_RS06905 0.79 -0.9
1,560,692 - LRK53_RS06905 0.79 +0.2
1,560,692 - LRK53_RS06905 0.79 -0.4
1,560,692 - LRK53_RS06905 0.79 +1.2
1,560,692 - LRK53_RS06905 0.79 -1.1
1,560,692 - LRK53_RS06905 0.79 -0.7
1,560,692 - LRK53_RS06905 0.79 -0.1
1,560,692 - LRK53_RS06905 0.79 -0.7
1,560,692 - LRK53_RS06905 0.79 -0.2
1,560,780 + LRK53_RS06905 0.84 +0.2
1,560,781 - LRK53_RS06905 0.84 -1.9
1,560,781 - LRK53_RS06905 0.84 -0.6
1,560,781 - LRK53_RS06905 0.84 +0.9
1,560,799 + LRK53_RS06905 0.84 -0.3
1,560,799 + LRK53_RS06905 0.84 -0.1
1,560,799 + LRK53_RS06905 0.84 -1.5
1,560,799 + LRK53_RS06905 0.84 -0.4
1,560,800 - LRK53_RS06905 0.84 +0.3
1,560,800 - LRK53_RS06905 0.84 -2.1
1,560,800 - LRK53_RS06905 0.84 -1.1
1,560,800 - LRK53_RS06905 0.84 -0.7
1,560,806 - LRK53_RS06905 0.85 -1.7
1,561,171 + -2.4
1,561,172 - +0.9
1,561,172 - -0.7
1,561,280 + +0.2
1,561,280 + -1.2
1,561,280 + -0.9
1,561,280 + -0.7
1,561,280 + +0.5
1,561,281 - -1.1
1,561,281 - -1.1
1,561,281 - -0.8
1,561,281 - +0.9
1,561,281 - +0.2
1,561,281 - +0.9
1,561,281 - -1.0
1,561,281 - -0.1
1,561,375 - LRK53_RS06910 0.15 -2.1
1,561,530 - LRK53_RS06910 0.43 -0.8
1,561,530 - LRK53_RS06910 0.43 -2.8
1,561,554 + LRK53_RS06910 0.48 -0.7
1,561,554 + LRK53_RS06910 0.48 -1.7
1,561,555 - LRK53_RS06910 0.48 -1.8
1,561,740 + LRK53_RS06910 0.81 -1.7
1,561,740 + LRK53_RS06910 0.81 -0.6
1,561,740 + LRK53_RS06910 0.81 -0.7
1,561,740 + LRK53_RS06910 0.81 -2.0
1,561,741 - LRK53_RS06910 0.82 -0.7
1,561,741 - LRK53_RS06910 0.82 -0.7
1,561,741 - LRK53_RS06910 0.82 -0.8
1,561,928 + LRK53_RS06915 0.29 -3.4
1,561,928 + LRK53_RS06915 0.29 -0.8
1,561,928 + LRK53_RS06915 0.29 -0.9
1,561,929 - LRK53_RS06915 0.29 +0.9
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,929 - LRK53_RS06915 0.29 -0.7
1,561,929 - LRK53_RS06915 0.29 -2.7
1,561,929 - LRK53_RS06915 0.29 -0.3
1,561,929 - LRK53_RS06915 0.29 +1.3
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,929 - LRK53_RS06915 0.29 -1.4
1,561,929 - LRK53_RS06915 0.29 +1.3
1,561,929 - LRK53_RS06915 0.29 +0.1
1,561,929 - LRK53_RS06915 0.29 -1.2
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,929 - LRK53_RS06915 0.29 -0.7
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,929 - LRK53_RS06915 0.29 -0.4
1,561,929 - LRK53_RS06915 0.29 +0.9
1,561,929 - LRK53_RS06915 0.29 +0.9
1,561,929 - LRK53_RS06915 0.29 -0.1
1,561,949 + LRK53_RS06915 0.35 -1.1
1,561,949 + LRK53_RS06915 0.35 -0.4
1,561,949 + LRK53_RS06915 0.35 -0.9
1,561,949 + LRK53_RS06915 0.35 -1.9
1,561,950 - LRK53_RS06915 0.36 -1.2
1,561,950 - LRK53_RS06915 0.36 -0.1
1,561,950 - LRK53_RS06915 0.36 -1.1
1,561,950 - LRK53_RS06915 0.36 -0.7
1,562,084 + LRK53_RS06915 0.78 -1.0
1,562,085 - LRK53_RS06915 0.78 -1.4
1,562,085 - LRK53_RS06915 0.78 -0.7
1,562,225 - -1.2
1,562,290 - -1.9
1,562,331 + -2.1
1,562,405 - LRK53_RS06920 0.16 -0.1
1,562,405 - LRK53_RS06920 0.16 -1.5
1,562,610 + LRK53_RS06920 0.42 -1.1
1,562,610 + LRK53_RS06920 0.42 -0.1
1,562,610 + LRK53_RS06920 0.42 -0.1
1,562,622 + LRK53_RS06920 0.44 -1.1
1,562,622 + LRK53_RS06920 0.44 +0.5
1,562,809 + LRK53_RS06920 0.67 -1.1
1,562,809 + LRK53_RS06920 0.67 -0.6
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 -0.4
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 -0.7
1,562,809 + LRK53_RS06920 0.67 -1.7
1,562,809 + LRK53_RS06920 0.67 -2.1
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 -1.3
1,562,809 + LRK53_RS06920 0.67 -1.1
1,562,809 + LRK53_RS06920 0.67 -1.6
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 +0.3
1,562,809 + LRK53_RS06920 0.67 -1.3
1,562,809 + LRK53_RS06920 0.67 -1.0
1,562,810 - LRK53_RS06920 0.68 -0.9
1,562,810 - LRK53_RS06920 0.68 -1.9
1,562,810 - LRK53_RS06920 0.68 -0.4
1,562,810 - LRK53_RS06920 0.68 -0.1
1,562,810 - LRK53_RS06920 0.68 -0.7
1,562,810 - LRK53_RS06920 0.68 -0.3
1,562,810 - LRK53_RS06920 0.68 +0.9
1,562,810 - LRK53_RS06920 0.68 -1.4
1,562,810 - LRK53_RS06920 0.68 +0.9
1,562,810 - LRK53_RS06920 0.68 -1.6
1,562,810 - LRK53_RS06920 0.68 -0.7
1,562,810 - LRK53_RS06920 0.68 -0.8
1,562,810 - LRK53_RS06920 0.68 +0.3
1,562,810 - LRK53_RS06920 0.68 +2.2
1,562,810 - LRK53_RS06920 0.68 -0.1
1,562,810 - LRK53_RS06920 0.68 -0.4
1,562,810 - LRK53_RS06920 0.68 -0.8
1,562,810 - LRK53_RS06920 0.68 -1.9

Or see this region's nucleotide sequence