Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04800

Experiment: R2A_PIPES no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES no stress control
1,117,817	+		LRK53_RS04795	0.76	-0.9
1,117,817	+		LRK53_RS04795	0.76	-0.7
1,117,817	+		LRK53_RS04795	0.76	-1.3
1,117,817	+		LRK53_RS04795	0.76	-1.1
1,117,817	+		LRK53_RS04795	0.76	-0.4
1,117,817	+		LRK53_RS04795	0.76	-0.1
1,117,817	+		LRK53_RS04795	0.76	+0.9
1,117,817	+		LRK53_RS04795	0.76	-1.0
1,117,817	+		LRK53_RS04795	0.76	-0.7
1,117,817	+		LRK53_RS04795	0.76	-0.1
1,117,817	+		LRK53_RS04795	0.76	-1.1
1,117,817	+		LRK53_RS04795	0.76	+0.9
1,117,860	-		LRK53_RS04795	0.80	-2.4
1,117,860	-		LRK53_RS04795	0.80	-0.7
1,118,091	-				-0.6
1,118,091	-				-1.1
1,118,091	-				-0.1
1,118,143	+				-0.7
1,118,173	+				-0.5
1,118,173	+				-1.3
1,118,173	+				-1.9
1,118,173	+				-1.1
1,118,173	+				+0.1
1,118,173	+				-0.2
1,118,174	-				-1.7
1,118,174	-				-0.1
1,118,174	-				-1.5
1,118,174	-				+0.7
1,118,174	-				-0.7
1,118,174	-				-0.3
1,118,174	-				+0.9
1,118,174	-				-0.1
1,118,191	+				-1.7
1,118,191	+				+0.9
1,118,191	+				-1.1
1,118,191	+				+0.3
1,118,191	+				-0.8
1,118,192	-				-0.1
1,118,192	-				-0.4
1,118,192	-				-1.7
1,118,192	-				-0.7
1,118,194	+				-0.1
1,118,194	+				-0.1
1,118,194	+				-1.7
1,118,194	+				-1.1
1,118,194	+				-0.8
1,118,195	-				-0.1
1,118,195	-				-0.1
1,118,195	-				-0.8
1,118,195	-				-0.9
1,118,195	-				-1.2
1,118,195	-				-0.5
1,118,195	-				+0.2
1,118,200	+				+0.3
1,118,201	-				-0.1
1,118,238	+				+0.9
1,118,239	-				-0.7
1,118,239	-				-1.3
1,118,444	+				-0.1
1,118,444	+				+0.9
1,118,445	-				-1.7
1,118,445	-				-0.4
1,118,455	+				-0.1
1,118,455	+				-1.9
1,118,456	-				-1.4
1,118,473	+				-3.2
1,118,473	+				-0.8
1,118,473	+				-1.1
1,118,473	+				-1.2
1,118,473	+				+0.9
1,118,473	+				-1.4
1,118,473	+				-1.7
1,118,473	+				+0.3
1,118,473	+				-1.4
1,118,473	+				-1.1
1,118,474	-				-2.1
1,118,474	-				-0.1
1,118,474	-				+0.6
1,118,474	-				-1.8
1,118,474	-				-1.4
1,118,475	+				-0.7
1,118,476	-				-0.1
1,118,476	-				-2.5
1,118,476	-				+0.9
1,118,476	-				-1.4
1,118,476	-				-0.1
1,118,476	-				+1.9
1,118,476	-				+0.5
1,118,476	-				+0.3
1,118,481	+				-1.1
1,118,481	+				-0.1
1,118,535	-				-0.8
1,118,588	-				-1.4
1,118,589	+				-0.7
1,118,590	-				-1.2
1,118,590	-				-1.9
1,118,590	-				-1.1
1,118,590	-				-1.7
1,118,620	-				-1.5
1,118,620	-				-1.1
1,118,625	+				-2.1
1,118,626	-				-2.5
1,118,626	-				-1.5
1,118,686	+				-0.1
1,118,687	-				+0.9
1,118,695	+				-1.4
1,118,695	+				-0.1
1,118,695	+				-0.7
1,118,696	-		LRK53_RS04800	0.10	+0.9
1,118,696	-		LRK53_RS04800	0.10	-2.2
1,118,696	-		LRK53_RS04800	0.10	-1.1
1,118,696	-		LRK53_RS04800	0.10	-0.1
1,118,717	+		LRK53_RS04800	0.12	-1.4
1,118,718	-		LRK53_RS04800	0.12	+0.9
1,118,718	-		LRK53_RS04800	0.12	-0.9
1,118,765	+		LRK53_RS04800	0.15	-0.4
1,118,767	+		LRK53_RS04800	0.15	-0.7
1,118,768	-		LRK53_RS04800	0.15	-1.6
1,118,768	-		LRK53_RS04800	0.15	-0.4
1,118,916	-		LRK53_RS04800	0.26	+0.9
1,118,916	-		LRK53_RS04800	0.26	+1.5
1,118,932	-		LRK53_RS04800	0.27	-0.1
1,118,952	+		LRK53_RS04800	0.29	+0.9
1,118,952	+		LRK53_RS04800	0.29	+0.2
1,118,953	-		LRK53_RS04800	0.29	-0.7
1,118,953	-		LRK53_RS04800	0.29	+0.0
1,118,953	-		LRK53_RS04800	0.29	-1.4
1,118,953	-		LRK53_RS04800	0.29	+1.9
1,118,953	-		LRK53_RS04800	0.29	-0.7
1,118,966	+		LRK53_RS04800	0.30	-1.4
1,118,999	-		LRK53_RS04800	0.32	-0.1
1,119,028	+		LRK53_RS04800	0.35	-2.1
1,119,062	-		LRK53_RS04800	0.37	+1.9
1,119,066	+		LRK53_RS04800	0.37	-0.1
1,119,067	-		LRK53_RS04800	0.37	-2.1
1,119,074	-		LRK53_RS04800	0.38	-1.0
1,119,095	+		LRK53_RS04800	0.40	-0.7
1,119,095	+		LRK53_RS04800	0.40	-0.1
1,119,096	-		LRK53_RS04800	0.40	-0.9
1,119,096	-		LRK53_RS04800	0.40	-1.1
1,119,126	-		LRK53_RS04800	0.42	+0.2
1,119,171	+		LRK53_RS04800	0.45	+0.5
1,119,196	-		LRK53_RS04800	0.47	-1.4
1,119,212	+		LRK53_RS04800	0.48	-2.1
1,119,213	-		LRK53_RS04800	0.48	-0.1
1,119,213	-		LRK53_RS04800	0.48	-1.3
1,119,214	+		LRK53_RS04800	0.48	-0.8
1,119,223	-		LRK53_RS04800	0.49	-1.1
1,119,223	-		LRK53_RS04800	0.49	-0.4
1,119,223	-		LRK53_RS04800	0.49	-2.4
1,119,223	-		LRK53_RS04800	0.49	-0.7
1,119,236	+		LRK53_RS04800	0.50	-0.2
1,119,254	+		LRK53_RS04800	0.51	-1.2
1,119,254	+		LRK53_RS04800	0.51	-0.1
1,119,255	-		LRK53_RS04800	0.51	+0.4
1,119,255	-		LRK53_RS04800	0.51	+0.6
1,119,255	-		LRK53_RS04800	0.51	-0.5
1,119,289	-		LRK53_RS04800	0.54	-0.1
1,119,289	-		LRK53_RS04800	0.54	-0.3
1,119,289	-		LRK53_RS04800	0.54	+0.2
1,119,299	+		LRK53_RS04800	0.55	-1.1
1,119,299	+		LRK53_RS04800	0.55	+0.1
1,119,299	+		LRK53_RS04800	0.55	-1.2
1,119,299	+		LRK53_RS04800	0.55	-0.3
1,119,300	-		LRK53_RS04800	0.55	+0.9
1,119,329	+		LRK53_RS04800	0.57	-0.2
1,119,333	+		LRK53_RS04800	0.57	-1.1
1,119,333	+		LRK53_RS04800	0.57	-1.1
1,119,333	+		LRK53_RS04800	0.57	-1.2
1,119,333	+		LRK53_RS04800	0.57	-2.2
1,119,333	+		LRK53_RS04800	0.57	-0.8
1,119,333	+		LRK53_RS04800	0.57	-1.3
1,119,334	-		LRK53_RS04800	0.57	-1.1
1,119,334	-		LRK53_RS04800	0.57	-0.1
1,119,334	-		LRK53_RS04800	0.57	-1.8
1,119,344	+		LRK53_RS04800	0.58	-0.5
1,119,344	+		LRK53_RS04800	0.58	-1.4
1,119,345	-		LRK53_RS04800	0.58	-2.2
1,119,370	+		LRK53_RS04800	0.60	-0.1
1,119,415	+		LRK53_RS04800	0.63	-1.0
1,119,415	+		LRK53_RS04800	0.63	-0.7
1,119,416	-		LRK53_RS04800	0.63	-0.2
1,119,452	+		LRK53_RS04800	0.66	-0.1
1,119,452	+		LRK53_RS04800	0.66	-1.9
1,119,461	+		LRK53_RS04800	0.67	-0.3
1,119,461	+		LRK53_RS04800	0.67	-0.7
1,119,461	+		LRK53_RS04800	0.67	+0.9
1,119,479	+		LRK53_RS04800	0.68	-1.2
1,119,480	-		LRK53_RS04800	0.68	+1.9
1,119,480	-		LRK53_RS04800	0.68	-0.1
1,119,527	+		LRK53_RS04800	0.72	-0.1
1,119,527	+		LRK53_RS04800	0.72	-0.7
1,119,527	+		LRK53_RS04800	0.72	-0.9
1,119,528	-		LRK53_RS04800	0.72	-0.6
1,119,528	-		LRK53_RS04800	0.72	-0.1
1,119,531	+		LRK53_RS04800	0.72	-0.8
1,119,531	+		LRK53_RS04800	0.72	-2.1
1,119,532	-		LRK53_RS04800	0.72	+0.9
1,119,532	-		LRK53_RS04800	0.72	+0.9
1,119,532	-		LRK53_RS04800	0.72	-0.9
1,119,554	-		LRK53_RS04800	0.74	-1.2
1,119,598	-		LRK53_RS04800	0.77	+0.1
1,119,607	+		LRK53_RS04800	0.77	-0.1
1,119,608	-		LRK53_RS04800	0.78	-0.7
1,119,608	-		LRK53_RS04800	0.78	-0.1
1,119,624	-		LRK53_RS04800	0.79	-0.1
1,119,642	-		LRK53_RS04800	0.80	+0.9
1,119,642	-		LRK53_RS04800	0.80	-1.9
1,119,664	+		LRK53_RS04800	0.82	+0.1
1,119,677	-		LRK53_RS04800	0.83	+1.3
1,119,695	+		LRK53_RS04800	0.84	-1.3
1,119,853	+				-1.7
1,119,853	+				-0.7
1,119,854	-				-0.2
1,119,854	-				-0.1
1,119,874	+				+0.5
1,119,874	+				-1.1
1,119,887	+				+0.9
1,119,887	+				-1.7
1,119,887	+				-0.5
1,119,887	+				-0.7
1,119,888	-				-1.2
1,119,888	-				-1.4
1,119,900	-				-0.7
1,119,900	-				+0.9
1,119,903	+				-0.2
1,119,904	-				-1.1
1,119,928	+				-0.2
1,119,929	-				-1.0
1,119,929	-				-2.4
1,119,930	+				-0.7
1,119,935	+				+0.3
1,119,935	+				-0.4
1,119,946	+				-1.4
1,119,946	+				-0.7
1,119,946	+				-0.8
1,119,946	+				-0.8
1,119,946	+				-1.1
1,119,947	-				-0.8
1,119,947	-				+0.9
1,119,947	-				-0.1
1,119,947	-				-1.0
1,119,947	-				+0.3
1,119,947	-				+0.9
1,120,056	-				-0.1
1,120,056	-				-1.0
1,120,056	-				-1.1
1,120,056	-				-0.7
1,120,056	-				-0.4
1,120,100	+				-1.1
1,120,101	-				-0.1
1,120,111	+				+0.1
1,120,112	-				-2.9
1,120,203	-				-0.5
1,120,203	-				-1.7
1,120,235	-				+1.7
1,120,280	+				-0.7
1,120,281	-				+0.5
1,120,292	+				-0.5
1,120,292	+				-1.1
1,120,292	+				-1.2
1,120,292	+				-1.4
1,120,292	+				-0.3
1,120,293	-				-0.7
1,120,293	-				-1.3
1,120,293	-				-0.5
1,120,293	-				-1.4
1,120,293	-				-1.7
1,120,308	+				-0.7
1,120,309	-				+0.9
1,120,309	-				+0.1
1,120,309	-				-1.5
1,120,396	+				-1.1
1,120,440	+				-1.3
1,120,441	-				-0.9
1,120,473	-				-1.0
1,120,473	-				-1.4
1,120,473	-				-0.1
1,120,476	+				-1.2
1,120,477	-				+0.9
1,120,566	+		LRK53_RS04805	0.15	+0.5
1,120,566	+		LRK53_RS04805	0.15	-0.2
1,120,566	+		LRK53_RS04805	0.15	-2.0
1,120,567	-		LRK53_RS04805	0.15	-1.9
1,120,629	+		LRK53_RS04805	0.21	-1.7
1,120,629	+		LRK53_RS04805	0.21	-1.4
1,120,630	-		LRK53_RS04805	0.21	-0.7
1,120,665	+		LRK53_RS04805	0.24	+0.3
1,120,665	+		LRK53_RS04805	0.24	-0.4
1,120,665	+		LRK53_RS04805	0.24	-0.1
1,120,666	-		LRK53_RS04805	0.24	-1.4
1,120,666	-		LRK53_RS04805	0.24	-2.4
1,120,666	-		LRK53_RS04805	0.24	+0.9
1,120,671	+		LRK53_RS04805	0.25	+0.7
1,120,671	+		LRK53_RS04805	0.25	-0.8
1,120,672	-		LRK53_RS04805	0.25	+0.0
1,120,672	-		LRK53_RS04805	0.25	-0.7
1,120,676	-		LRK53_RS04805	0.25	+0.9
1,120,686	+		LRK53_RS04805	0.26	-0.1
1,120,686	+		LRK53_RS04805	0.26	-0.7
1,120,687	-		LRK53_RS04805	0.26	-1.2
1,120,687	-		LRK53_RS04805	0.26	-0.1
1,120,723	-		LRK53_RS04805	0.29	+0.0
1,120,772	-		LRK53_RS04805	0.34	-0.7
1,120,807	-		LRK53_RS04805	0.37	+0.5
1,120,807	-		LRK53_RS04805	0.37	-0.4
1,120,845	-		LRK53_RS04805	0.41	-1.1
1,120,846	+		LRK53_RS04805	0.41	-0.5
1,120,846	+		LRK53_RS04805	0.41	-1.7
1,120,846	+		LRK53_RS04805	0.41	-1.9
1,120,846	+		LRK53_RS04805	0.41	-1.4
1,120,847	-		LRK53_RS04805	0.41	-0.3
1,120,847	-		LRK53_RS04805	0.41	-0.6
1,120,849	+		LRK53_RS04805	0.41	-0.1
1,120,850	-		LRK53_RS04805	0.41	-1.4
1,120,850	-		LRK53_RS04805	0.41	+0.3
1,120,850	-		LRK53_RS04805	0.41	-2.2
1,120,850	-		LRK53_RS04805	0.41	+0.5
1,120,850	-		LRK53_RS04805	0.41	+1.5
1,120,850	-		LRK53_RS04805	0.41	+0.0
1,120,868	+		LRK53_RS04805	0.43	-1.8
1,120,868	+		LRK53_RS04805	0.43	+0.9
1,120,868	+		LRK53_RS04805	0.43	+0.9
1,120,868	+		LRK53_RS04805	0.43	-0.3
1,120,868	+		LRK53_RS04805	0.43	-1.4
1,120,868	+		LRK53_RS04805	0.43	-0.7
1,120,868	+		LRK53_RS04805	0.43	-0.1
1,120,868	+		LRK53_RS04805	0.43	-0.9
1,120,868	+		LRK53_RS04805	0.43	-0.4
1,120,869	-		LRK53_RS04805	0.43	-0.4
1,120,869	-		LRK53_RS04805	0.43	-1.7
1,120,869	-		LRK53_RS04805	0.43	-0.2
1,120,869	-		LRK53_RS04805	0.43	-1.7
1,120,869	-		LRK53_RS04805	0.43	-1.3
1,120,869	-		LRK53_RS04805	0.43	-0.1
1,120,869	-		LRK53_RS04805	0.43	-1.7
1,120,888	-		LRK53_RS04805	0.45	+0.2
1,120,888	-		LRK53_RS04805	0.45	-0.4