Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02835

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02825 and LRK53_RS02830 are separated by 12 nucleotidesLRK53_RS02830 and LRK53_RS02835 are separated by 27 nucleotidesLRK53_RS02835 and LRK53_RS02840 are separated by 95 nucleotidesLRK53_RS02840 and LRK53_RS02845 are separated by 13 nucleotides LRK53_RS02825: LRK53_RS02825 - cytochrome c4, at 655,939 to 656,643 _RS02825 LRK53_RS02830: LRK53_RS02830 - glutaminyl-peptide cyclotransferase, at 656,656 to 657,432 _RS02830 LRK53_RS02835: LRK53_RS02835 - ATP-dependent RNA helicase DbpA, at 657,460 to 658,839 _RS02835 LRK53_RS02840: LRK53_RS02840 - dihydroneopterin aldolase, at 658,935 to 659,291 _RS02840 LRK53_RS02845: LRK53_RS02845 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 659,305 to 659,793 _RS02845 Position (kb) 657 658 659Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.506 kb on + strand, within LRK53_RS02825at 656.507 kb on - strand, within LRK53_RS02825at 656.507 kb on - strand, within LRK53_RS02825at 656.507 kb on - strand, within LRK53_RS02825at 656.507 kb on - strand, within LRK53_RS02825at 656.626 kb on + strandat 656.627 kb on - strandat 656.627 kb on - strandat 656.627 kb on - strandat 656.627 kb on - strandat 656.627 kb on - strandat 656.627 kb on - strandat 656.885 kb on + strand, within LRK53_RS02830at 656.885 kb on + strand, within LRK53_RS02830at 656.885 kb on + strand, within LRK53_RS02830at 656.886 kb on - strand, within LRK53_RS02830at 656.886 kb on - strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.020 kb on + strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.021 kb on - strand, within LRK53_RS02830at 657.105 kb on - strand, within LRK53_RS02830at 657.179 kb on + strand, within LRK53_RS02830at 657.180 kb on - strand, within LRK53_RS02830at 657.180 kb on - strand, within LRK53_RS02830at 657.180 kb on - strand, within LRK53_RS02830at 657.180 kb on - strand, within LRK53_RS02830at 657.272 kb on + strand, within LRK53_RS02830at 657.272 kb on + strand, within LRK53_RS02830at 657.272 kb on + strand, within LRK53_RS02830at 657.272 kb on + strand, within LRK53_RS02830at 657.273 kb on - strand, within LRK53_RS02830at 657.278 kb on + strand, within LRK53_RS02830at 657.278 kb on + strand, within LRK53_RS02830at 657.279 kb on - strand, within LRK53_RS02830at 657.279 kb on - strand, within LRK53_RS02830at 657.290 kb on + strand, within LRK53_RS02830at 657.290 kb on + strand, within LRK53_RS02830at 657.290 kb on + strand, within LRK53_RS02830at 657.290 kb on + strand, within LRK53_RS02830at 657.291 kb on - strand, within LRK53_RS02830at 657.291 kb on - strand, within LRK53_RS02830at 657.291 kb on - strand, within LRK53_RS02830at 657.308 kb on + strand, within LRK53_RS02830at 657.309 kb on - strand, within LRK53_RS02830at 657.309 kb on - strand, within LRK53_RS02830at 657.329 kb on + strand, within LRK53_RS02830at 657.347 kb on + strand, within LRK53_RS02830at 657.347 kb on + strand, within LRK53_RS02830at 657.348 kb on - strand, within LRK53_RS02830at 657.348 kb on - strand, within LRK53_RS02830at 657.348 kb on - strand, within LRK53_RS02830at 657.353 kb on + strand, within LRK53_RS02830at 657.354 kb on - strand, within LRK53_RS02830at 657.354 kb on - strand, within LRK53_RS02830at 657.461 kb on + strandat 657.462 kb on - strandat 657.462 kb on - strandat 657.462 kb on - strandat 657.462 kb on - strandat 657.466 kb on + strandat 657.557 kb on + strandat 657.557 kb on + strandat 657.557 kb on + strandat 657.557 kb on + strandat 657.557 kb on + strandat 657.558 kb on - strandat 657.558 kb on - strandat 657.558 kb on - strandat 657.864 kb on + strand, within LRK53_RS02835at 657.865 kb on - strand, within LRK53_RS02835at 657.865 kb on - strand, within LRK53_RS02835at 657.893 kb on + strand, within LRK53_RS02835at 657.893 kb on + strand, within LRK53_RS02835at 657.893 kb on + strand, within LRK53_RS02835at 657.894 kb on - strand, within LRK53_RS02835at 657.894 kb on - strand, within LRK53_RS02835at 657.894 kb on - strand, within LRK53_RS02835at 657.894 kb on - strand, within LRK53_RS02835at 658.043 kb on + strand, within LRK53_RS02835at 658.043 kb on + strand, within LRK53_RS02835at 658.283 kb on + strand, within LRK53_RS02835at 658.283 kb on + strand, within LRK53_RS02835at 658.283 kb on + strand, within LRK53_RS02835at 658.284 kb on - strand, within LRK53_RS02835at 658.284 kb on - strand, within LRK53_RS02835at 658.775 kb on + strandat 658.907 kb on + strandat 658.907 kb on + strandat 658.907 kb on + strandat 658.907 kb on + strandat 659.290 kb on - strandat 659.318 kb on - strandat 659.353 kb on + strandat 659.417 kb on - strand, within LRK53_RS02845at 659.596 kb on + strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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656,506 + LRK53_RS02825 0.80 -0.0
656,506 + LRK53_RS02825 0.80 -0.4
656,506 + LRK53_RS02825 0.80 -0.0
656,506 + LRK53_RS02825 0.80 +0.3
656,506 + LRK53_RS02825 0.80 -0.6
656,506 + LRK53_RS02825 0.80 -0.3
656,506 + LRK53_RS02825 0.80 -1.2
656,506 + LRK53_RS02825 0.80 +0.7
656,506 + LRK53_RS02825 0.80 +0.4
656,506 + LRK53_RS02825 0.80 -1.8
656,506 + LRK53_RS02825 0.80 +0.1
656,506 + LRK53_RS02825 0.80 -0.6
656,506 + LRK53_RS02825 0.80 -0.9
656,506 + LRK53_RS02825 0.80 -2.0
656,506 + LRK53_RS02825 0.80 -0.0
656,506 + LRK53_RS02825 0.80 -1.9
656,506 + LRK53_RS02825 0.80 -1.6
656,507 - LRK53_RS02825 0.81 -1.6
656,507 - LRK53_RS02825 0.81 +1.0
656,507 - LRK53_RS02825 0.81 -1.0
656,507 - LRK53_RS02825 0.81 -0.0
656,626 + -2.0
656,627 - +1.0
656,627 - -0.7
656,627 - -1.3
656,627 - -1.5
656,627 - -1.3
656,627 - +1.0
656,885 + LRK53_RS02830 0.29 +1.0
656,885 + LRK53_RS02830 0.29 -0.0
656,885 + LRK53_RS02830 0.29 +0.3
656,886 - LRK53_RS02830 0.30 -1.5
656,886 - LRK53_RS02830 0.30 +0.4
657,020 + LRK53_RS02830 0.47 -0.2
657,020 + LRK53_RS02830 0.47 -1.6
657,020 + LRK53_RS02830 0.47 -0.4
657,020 + LRK53_RS02830 0.47 +0.3
657,020 + LRK53_RS02830 0.47 +1.0
657,020 + LRK53_RS02830 0.47 -2.0
657,020 + LRK53_RS02830 0.47 -0.0
657,020 + LRK53_RS02830 0.47 -1.6
657,020 + LRK53_RS02830 0.47 +1.0
657,020 + LRK53_RS02830 0.47 -0.5
657,020 + LRK53_RS02830 0.47 -1.3
657,020 + LRK53_RS02830 0.47 -2.9
657,020 + LRK53_RS02830 0.47 -1.0
657,020 + LRK53_RS02830 0.47 -2.5
657,020 + LRK53_RS02830 0.47 -1.5
657,020 + LRK53_RS02830 0.47 -1.1
657,020 + LRK53_RS02830 0.47 -0.6
657,020 + LRK53_RS02830 0.47 -1.7
657,020 + LRK53_RS02830 0.47 -0.6
657,020 + LRK53_RS02830 0.47 -2.2
657,020 + LRK53_RS02830 0.47 -1.3
657,020 + LRK53_RS02830 0.47 -1.0
657,021 - LRK53_RS02830 0.47 +1.7
657,021 - LRK53_RS02830 0.47 +2.0
657,021 - LRK53_RS02830 0.47 -1.0
657,021 - LRK53_RS02830 0.47 -0.3
657,021 - LRK53_RS02830 0.47 -0.5
657,021 - LRK53_RS02830 0.47 -0.0
657,021 - LRK53_RS02830 0.47 -1.2
657,021 - LRK53_RS02830 0.47 -0.6
657,021 - LRK53_RS02830 0.47 -0.0
657,021 - LRK53_RS02830 0.47 -0.8
657,021 - LRK53_RS02830 0.47 +0.4
657,021 - LRK53_RS02830 0.47 +0.4
657,021 - LRK53_RS02830 0.47 -1.7
657,021 - LRK53_RS02830 0.47 -0.2
657,021 - LRK53_RS02830 0.47 -1.5
657,021 - LRK53_RS02830 0.47 +1.0
657,021 - LRK53_RS02830 0.47 +0.4
657,021 - LRK53_RS02830 0.47 -2.0
657,021 - LRK53_RS02830 0.47 -0.7
657,021 - LRK53_RS02830 0.47 -0.6
657,021 - LRK53_RS02830 0.47 +1.6
657,021 - LRK53_RS02830 0.47 -0.6
657,021 - LRK53_RS02830 0.47 -1.2
657,021 - LRK53_RS02830 0.47 -0.6
657,021 - LRK53_RS02830 0.47 -0.0
657,021 - LRK53_RS02830 0.47 -0.6
657,021 - LRK53_RS02830 0.47 +1.0
657,105 - LRK53_RS02830 0.58 -2.5
657,179 + LRK53_RS02830 0.67 +0.3
657,180 - LRK53_RS02830 0.67 -0.6
657,180 - LRK53_RS02830 0.67 -0.6
657,180 - LRK53_RS02830 0.67 -0.2
657,180 - LRK53_RS02830 0.67 -0.3
657,272 + LRK53_RS02830 0.79 -2.2
657,272 + LRK53_RS02830 0.79 +1.0
657,272 + LRK53_RS02830 0.79 +1.0
657,272 + LRK53_RS02830 0.79 -0.3
657,273 - LRK53_RS02830 0.79 -0.6
657,278 + LRK53_RS02830 0.80 -1.3
657,278 + LRK53_RS02830 0.80 +0.4
657,279 - LRK53_RS02830 0.80 -1.0
657,279 - LRK53_RS02830 0.80 +2.6
657,290 + LRK53_RS02830 0.82 -1.2
657,290 + LRK53_RS02830 0.82 +0.3
657,290 + LRK53_RS02830 0.82 +2.0
657,290 + LRK53_RS02830 0.82 -0.0
657,291 - LRK53_RS02830 0.82 -1.0
657,291 - LRK53_RS02830 0.82 -0.0
657,291 - LRK53_RS02830 0.82 -0.0
657,308 + LRK53_RS02830 0.84 -1.9
657,309 - LRK53_RS02830 0.84 -0.4
657,309 - LRK53_RS02830 0.84 -0.0
657,329 + LRK53_RS02830 0.87 +1.0
657,347 + LRK53_RS02830 0.89 -0.0
657,347 + LRK53_RS02830 0.89 -1.0
657,348 - LRK53_RS02830 0.89 +0.3
657,348 - LRK53_RS02830 0.89 +1.0
657,348 - LRK53_RS02830 0.89 +1.0
657,353 + LRK53_RS02830 0.90 -1.3
657,354 - LRK53_RS02830 0.90 -1.3
657,354 - LRK53_RS02830 0.90 -0.6
657,461 + -1.1
657,462 - -2.0
657,462 - -1.4
657,462 - -0.0
657,462 - +0.3
657,466 + -1.7
657,557 + -0.5
657,557 + -0.0
657,557 + -0.0
657,557 + -1.0
657,557 + -3.3
657,558 - -0.6
657,558 - -0.6
657,558 - -0.0
657,864 + LRK53_RS02835 0.29 -1.3
657,865 - LRK53_RS02835 0.29 -0.0
657,865 - LRK53_RS02835 0.29 -0.4
657,893 + LRK53_RS02835 0.31 -0.2
657,893 + LRK53_RS02835 0.31 -0.7
657,893 + LRK53_RS02835 0.31 -0.6
657,894 - LRK53_RS02835 0.31 -0.6
657,894 - LRK53_RS02835 0.31 -1.3
657,894 - LRK53_RS02835 0.31 -0.5
657,894 - LRK53_RS02835 0.31 +0.5
658,043 + LRK53_RS02835 0.42 +0.4
658,043 + LRK53_RS02835 0.42 -0.6
658,283 + LRK53_RS02835 0.60 -0.0
658,283 + LRK53_RS02835 0.60 -0.3
658,283 + LRK53_RS02835 0.60 -0.0
658,284 - LRK53_RS02835 0.60 -1.8
658,284 - LRK53_RS02835 0.60 -0.5
658,775 + -0.1
658,907 + -2.2
658,907 + -1.0
658,907 + -2.2
658,907 + +1.3
659,290 - -1.8
659,318 - -0.2
659,353 + -0.2
659,417 - LRK53_RS02845 0.23 +1.0
659,596 + LRK53_RS02845 0.60 -0.8
659,597 - LRK53_RS02845 0.60 -1.1
659,597 - LRK53_RS02845 0.60 -1.0
659,597 - LRK53_RS02845 0.60 -0.0
659,597 - LRK53_RS02845 0.60 -1.2

Or see this region's nucleotide sequence