Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00270

Experiment: R2A_PIPES no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00260 and LRK53_RS00265 are separated by 130 nucleotidesLRK53_RS00265 and LRK53_RS00270 are separated by 53 nucleotidesLRK53_RS00270 and LRK53_RS00275 are separated by 23 nucleotidesLRK53_RS00275 and LRK53_RS00280 overlap by 4 nucleotidesLRK53_RS00280 and LRK53_RS00285 overlap by 4 nucleotides LRK53_RS00260: LRK53_RS00260 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 64,138 to 64,761 _RS00260 LRK53_RS00265: LRK53_RS00265 - DUF1328 domain-containing protein, at 64,892 to 65,047 _RS00265 LRK53_RS00270: LRK53_RS00270 - DUF883 family protein, at 65,101 to 65,463 _RS00270 LRK53_RS00275: LRK53_RS00275 - hypothetical protein, at 65,487 to 65,957 _RS00275 LRK53_RS00280: LRK53_RS00280 - hypothetical protein, at 65,954 to 66,277 _RS00280 LRK53_RS00285: LRK53_RS00285 - AI-2E family transporter, at 66,274 to 67,437 _RS00285 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.137 kb on + strandat 64.138 kb on - strandat 64.138 kb on - strandat 64.138 kb on - strandat 64.138 kb on - strandat 64.138 kb on - strandat 64.138 kb on - strandat 64.156 kb on + strandat 64.156 kb on + strandat 64.156 kb on + strandat 64.157 kb on - strandat 64.157 kb on - strandat 64.157 kb on - strandat 64.157 kb on - strandat 64.157 kb on - strandat 64.513 kb on + strand, within LRK53_RS00260at 64.513 kb on + strand, within LRK53_RS00260at 64.514 kb on - strand, within LRK53_RS00260at 64.555 kb on + strand, within LRK53_RS00260at 64.555 kb on + strand, within LRK53_RS00260at 64.555 kb on + strand, within LRK53_RS00260at 64.565 kb on - strand, within LRK53_RS00260at 64.609 kb on + strand, within LRK53_RS00260at 64.609 kb on + strand, within LRK53_RS00260at 64.609 kb on + strand, within LRK53_RS00260at 64.609 kb on + strand, within LRK53_RS00260at 64.609 kb on + strand, within LRK53_RS00260at 64.610 kb on - strand, within LRK53_RS00260at 64.610 kb on - strand, within LRK53_RS00260at 64.610 kb on - strand, within LRK53_RS00260at 64.728 kb on + strandat 64.729 kb on - strandat 64.729 kb on - strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.733 kb on - strandat 64.901 kb on + strandat 64.901 kb on + strandat 64.901 kb on + strandat 64.901 kb on + strandat 64.902 kb on - strandat 64.902 kb on - strandat 64.902 kb on - strandat 64.902 kb on - strandat 65.333 kb on - strand, within LRK53_RS00270at 65.383 kb on + strand, within LRK53_RS00270at 65.383 kb on + strand, within LRK53_RS00270at 65.383 kb on + strand, within LRK53_RS00270at 65.383 kb on + strand, within LRK53_RS00270at 65.384 kb on - strand, within LRK53_RS00270at 65.384 kb on - strand, within LRK53_RS00270at 66.294 kb on - strandat 66.294 kb on - strandat 66.294 kb on - strandat 66.460 kb on + strand, within LRK53_RS00285at 66.460 kb on + strand, within LRK53_RS00285at 66.460 kb on + strand, within LRK53_RS00285at 66.460 kb on + strand, within LRK53_RS00285at 66.460 kb on + strand, within LRK53_RS00285at 66.460 kb on + strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285at 66.461 kb on - strand, within LRK53_RS00285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
remove
64,137 + +1.1
64,137 + +0.1
64,137 + -1.6
64,137 + -1.5
64,137 + -2.2
64,137 + -0.9
64,137 + -1.5
64,137 + -0.7
64,137 + -1.5
64,137 + -0.8
64,137 + +1.1
64,137 + -2.1
64,137 + -1.2
64,137 + -0.9
64,138 - -0.9
64,138 - -0.5
64,138 - -0.5
64,138 - -0.9
64,138 - -0.5
64,138 - -0.1
64,156 + -0.9
64,156 + -0.9
64,156 + -0.7
64,157 - -0.5
64,157 - +0.3
64,157 - -1.1
64,157 - +0.1
64,157 - +0.5
64,513 + LRK53_RS00260 0.60 -1.4
64,513 + LRK53_RS00260 0.60 -0.3
64,514 - LRK53_RS00260 0.60 -1.2
64,555 + LRK53_RS00260 0.67 +0.1
64,555 + LRK53_RS00260 0.67 -1.2
64,555 + LRK53_RS00260 0.67 +1.5
64,565 - LRK53_RS00260 0.68 -2.0
64,609 + LRK53_RS00260 0.75 +1.1
64,609 + LRK53_RS00260 0.75 +0.7
64,609 + LRK53_RS00260 0.75 -0.2
64,609 + LRK53_RS00260 0.75 +2.7
64,609 + LRK53_RS00260 0.75 -1.1
64,610 - LRK53_RS00260 0.76 -1.1
64,610 - LRK53_RS00260 0.76 +0.5
64,610 - LRK53_RS00260 0.76 +0.1
64,728 + -0.9
64,729 - -1.8
64,729 - +0.1
64,732 + -1.1
64,732 + -1.5
64,732 + -0.2
64,732 + -1.9
64,732 + -1.0
64,732 + -0.7
64,732 + -0.6
64,732 + -2.1
64,733 - -0.8
64,733 - -0.7
64,733 - +0.3
64,733 - +0.7
64,733 - -1.2
64,733 - -1.2
64,733 - -1.2
64,733 - -0.2
64,733 - -1.1
64,901 + -1.6
64,901 + +1.1
64,901 + +0.3
64,901 + -0.4
64,902 - -0.8
64,902 - -1.2
64,902 - -0.8
64,902 - +0.1
65,333 - LRK53_RS00270 0.64 -0.8
65,383 + LRK53_RS00270 0.78 -0.5
65,383 + LRK53_RS00270 0.78 -2.2
65,383 + LRK53_RS00270 0.78 -2.6
65,383 + LRK53_RS00270 0.78 -1.7
65,384 - LRK53_RS00270 0.78 +1.1
65,384 - LRK53_RS00270 0.78 -1.2
66,294 - -1.0
66,294 - +1.1
66,294 - -1.0
66,460 + LRK53_RS00285 0.16 +0.1
66,460 + LRK53_RS00285 0.16 -0.5
66,460 + LRK53_RS00285 0.16 -0.4
66,460 + LRK53_RS00285 0.16 +1.1
66,460 + LRK53_RS00285 0.16 -0.9
66,460 + LRK53_RS00285 0.16 -0.2
66,461 - LRK53_RS00285 0.16 -1.5
66,461 - LRK53_RS00285 0.16 -1.5
66,461 - LRK53_RS00285 0.16 -1.5
66,461 - LRK53_RS00285 0.16 +1.1
66,461 - LRK53_RS00285 0.16 +0.1
66,461 - LRK53_RS00285 0.16 -1.9
66,461 - LRK53_RS00285 0.16 -0.9
66,461 - LRK53_RS00285 0.16 +0.7
66,461 - LRK53_RS00285 0.16 -0.3
66,461 - LRK53_RS00285 0.16 +0.1

Or see this region's nucleotide sequence