Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00160 and LRK53_RS00165 are separated by 103 nucleotides LRK53_RS00165 and LRK53_RS00170 overlap by 4 nucleotides LRK53_RS00170 and LRK53_RS00175 are separated by 2 nucleotides
LRK53_RS00160: LRK53_RS00160 - YafY family transcriptional regulator, at 41,602 to 42,306
_RS00160
LRK53_RS00165: LRK53_RS00165 - chromosome partitioning protein ParB, at 42,410 to 43,024
_RS00165
LRK53_RS00170: LRK53_RS00170 - SulP family inorganic anion transporter, at 43,021 to 44,682
_RS00170
LRK53_RS00175: LRK53_RS00175 - DUF885 family protein, at 44,685 to 46,469
_RS00175
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.266 kb on - strand at 42.266 kb on - strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.349 kb on - strand at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.903 kb on - strand, within LRK53_RS00165 at 42.992 kb on + strand at 42.992 kb on + strand at 42.993 kb on - strand at 42.993 kb on - strand at 42.993 kb on - strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.786 kb on + strand, within LRK53_RS00170 at 43.786 kb on + strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.799 kb on - strand, within LRK53_RS00170 at 43.799 kb on - strand, within LRK53_RS00170 at 43.881 kb on + strand, within LRK53_RS00170 at 43.881 kb on + strand, within LRK53_RS00170 at 43.882 kb on - strand, within LRK53_RS00170 at 44.114 kb on - strand, within LRK53_RS00170 at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.781 kb on + strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.782 kb on - strand at 44.973 kb on + strand, within LRK53_RS00175 at 44.973 kb on + strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.974 kb on - strand, within LRK53_RS00175 at 44.983 kb on - strand, within LRK53_RS00175 at 45.078 kb on + strand, within LRK53_RS00175 at 45.078 kb on + strand, within LRK53_RS00175 at 45.078 kb on + strand, within LRK53_RS00175 at 45.079 kb on - strand, within LRK53_RS00175 at 45.079 kb on - strand, within LRK53_RS00175 at 45.126 kb on + strand, within LRK53_RS00175 at 45.126 kb on + strand, within LRK53_RS00175 at 45.126 kb on + strand, within LRK53_RS00175 at 45.127 kb on - strand, within LRK53_RS00175 at 45.156 kb on + strand, within LRK53_RS00175 at 45.156 kb on + strand, within LRK53_RS00175 at 45.156 kb on + strand, within LRK53_RS00175 at 45.156 kb on + strand, within LRK53_RS00175 at 45.157 kb on - strand, within LRK53_RS00175 at 45.157 kb on - strand, within LRK53_RS00175 at 45.157 kb on - strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.291 kb on + strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.292 kb on - strand, within LRK53_RS00175 at 45.394 kb on - strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.426 kb on + strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.427 kb on - strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.483 kb on + strand, within LRK53_RS00175 at 45.484 kb on - strand, within LRK53_RS00175 at 45.484 kb on - strand, within LRK53_RS00175 at 45.486 kb on + strand, within LRK53_RS00175 at 45.486 kb on + strand, within LRK53_RS00175 at 45.486 kb on + strand, within LRK53_RS00175 at 45.486 kb on + strand, within LRK53_RS00175 at 45.487 kb on - strand, within LRK53_RS00175 at 45.487 kb on - strand, within LRK53_RS00175 at 45.487 kb on - strand, within LRK53_RS00175 at 45.487 kb on - strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.507 kb on + strand, within LRK53_RS00175 at 45.508 kb on - strand, within LRK53_RS00175 at 45.508 kb on - strand, within LRK53_RS00175
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 42,070 + LRK53_RS00160 0.66 +1.1 42,070 + LRK53_RS00160 0.66 -1.2 42,070 + LRK53_RS00160 0.66 -0.9 42,070 + LRK53_RS00160 0.66 -2.2 42,071 - LRK53_RS00160 0.67 -0.9 42,071 - LRK53_RS00160 0.67 -0.9 42,265 + +0.5 42,265 + +2.1 42,265 + +1.1 42,265 + +0.5 42,266 - +1.1 42,266 - -0.5 42,289 + -1.0 42,289 + -0.5 42,289 + +0.7 42,289 + -0.7 42,289 + -0.7 42,289 + -0.5 42,289 + -0.3 42,290 - +0.4 42,290 - -0.6 42,290 - -1.4 42,290 - -1.6 42,290 - -1.5 42,290 - -1.2 42,290 - -1.2 42,304 + -1.7 42,304 + -1.6 42,304 + +0.3 42,304 + -0.4 42,305 - -0.5 42,305 - +1.1 42,305 - +0.3 42,305 - +0.1 42,305 - -2.1 42,349 - +0.1 42,599 + LRK53_RS00165 0.31 +1.7 42,599 + LRK53_RS00165 0.31 -1.7 42,599 + LRK53_RS00165 0.31 -0.2 42,599 + LRK53_RS00165 0.31 +2.7 42,599 + LRK53_RS00165 0.31 -0.7 42,599 + LRK53_RS00165 0.31 -0.0 42,599 + LRK53_RS00165 0.31 -1.2 42,599 + LRK53_RS00165 0.31 -1.2 42,599 + LRK53_RS00165 0.31 -3.2 42,600 - LRK53_RS00165 0.31 -2.2 42,600 - LRK53_RS00165 0.31 -0.7 42,600 - LRK53_RS00165 0.31 +0.2 42,600 - LRK53_RS00165 0.31 -1.2 42,600 - LRK53_RS00165 0.31 -0.5 42,600 - LRK53_RS00165 0.31 +0.1 42,600 - LRK53_RS00165 0.31 -1.5 42,600 - LRK53_RS00165 0.31 -0.1 42,600 - LRK53_RS00165 0.31 -2.2 42,600 - LRK53_RS00165 0.31 -0.9 42,743 + LRK53_RS00165 0.54 -2.1 42,743 + LRK53_RS00165 0.54 +0.1 42,770 + LRK53_RS00165 0.59 -0.2 42,770 + LRK53_RS00165 0.59 -0.7 42,771 - LRK53_RS00165 0.59 +1.7 42,771 - LRK53_RS00165 0.59 +1.1 42,771 - LRK53_RS00165 0.59 -1.9 42,903 - LRK53_RS00165 0.80 -1.8 42,992 + +0.3 42,992 + +0.3 42,993 - -0.4 42,993 - -2.2 42,993 - -0.5 43,126 + -0.9 43,126 + -0.5 43,126 + -1.2 43,126 + -0.1 43,127 - -0.7 43,127 - -1.9 43,127 - -1.2 43,691 + LRK53_RS00170 0.40 -0.8 43,691 + LRK53_RS00170 0.40 +0.1 43,691 + LRK53_RS00170 0.40 -1.3 43,691 + LRK53_RS00170 0.40 +0.5 43,691 + LRK53_RS00170 0.40 +1.1 43,691 + LRK53_RS00170 0.40 +0.5 43,691 + LRK53_RS00170 0.40 -0.4 43,691 + LRK53_RS00170 0.40 -0.5 43,691 + LRK53_RS00170 0.40 -1.2 43,692 - LRK53_RS00170 0.40 -0.5 43,692 - LRK53_RS00170 0.40 -1.9 43,692 - LRK53_RS00170 0.40 -0.9 43,692 - LRK53_RS00170 0.40 +1.1 43,692 - LRK53_RS00170 0.40 -1.2 43,692 - LRK53_RS00170 0.40 -1.6 43,692 - LRK53_RS00170 0.40 -0.9 43,692 - LRK53_RS00170 0.40 -1.5 43,692 - LRK53_RS00170 0.40 -0.5 43,692 - LRK53_RS00170 0.40 -1.7 43,692 - LRK53_RS00170 0.40 -0.2 43,692 - LRK53_RS00170 0.40 -1.2 43,692 - LRK53_RS00170 0.40 -0.5 43,692 - LRK53_RS00170 0.40 +0.1 43,692 - LRK53_RS00170 0.40 +0.1 43,692 - LRK53_RS00170 0.40 +0.1 43,692 - LRK53_RS00170 0.40 -1.5 43,692 - LRK53_RS00170 0.40 -1.1 43,786 + LRK53_RS00170 0.46 -1.1 43,786 + LRK53_RS00170 0.46 -0.8 43,787 - LRK53_RS00170 0.46 -0.7 43,787 - LRK53_RS00170 0.46 -0.6 43,787 - LRK53_RS00170 0.46 -1.7 43,787 - LRK53_RS00170 0.46 -0.2 43,787 - LRK53_RS00170 0.46 -1.7 43,798 + LRK53_RS00170 0.47 -1.4 43,798 + LRK53_RS00170 0.47 -0.9 43,798 + LRK53_RS00170 0.47 +0.8 43,798 + LRK53_RS00170 0.47 -0.4 43,798 + LRK53_RS00170 0.47 +0.6 43,799 - LRK53_RS00170 0.47 -0.9 43,799 - LRK53_RS00170 0.47 -0.5 43,881 + LRK53_RS00170 0.52 +0.1 43,881 + LRK53_RS00170 0.52 +1.1 43,882 - LRK53_RS00170 0.52 -0.9 44,114 - LRK53_RS00170 0.66 +0.5 44,614 + -1.3 44,614 + -0.1 44,614 + -1.5 44,614 + -0.5 44,781 + -1.9 44,781 + +0.5 44,781 + -0.3 44,781 + +1.1 44,781 + +0.1 44,781 + -1.2 44,781 + -1.4 44,781 + -0.9 44,781 + -1.5 44,781 + -0.4 44,781 + -0.9 44,781 + -0.9 44,781 + -0.5 44,782 - -1.6 44,782 - +0.7 44,782 - +0.1 44,782 - +0.7 44,782 - -0.2 44,782 - -0.2 44,782 - -1.5 44,782 - -0.8 44,782 - -0.9 44,973 + LRK53_RS00175 0.16 +0.1 44,973 + LRK53_RS00175 0.16 -0.3 44,974 - LRK53_RS00175 0.16 +0.5 44,974 - LRK53_RS00175 0.16 -0.9 44,974 - LRK53_RS00175 0.16 +1.1 44,974 - LRK53_RS00175 0.16 +1.1 44,974 - LRK53_RS00175 0.16 +0.1 44,974 - LRK53_RS00175 0.16 -0.5 44,974 - LRK53_RS00175 0.16 -0.5 44,974 - LRK53_RS00175 0.16 -1.0 44,974 - LRK53_RS00175 0.16 +1.7 44,974 - LRK53_RS00175 0.16 -0.9 44,974 - LRK53_RS00175 0.16 -1.5 44,974 - LRK53_RS00175 0.16 -0.5 44,983 - LRK53_RS00175 0.17 -0.3 45,078 + LRK53_RS00175 0.22 -1.5 45,078 + LRK53_RS00175 0.22 -0.5 45,078 + LRK53_RS00175 0.22 -1.9 45,079 - LRK53_RS00175 0.22 +0.1 45,079 - LRK53_RS00175 0.22 +1.1 45,126 + LRK53_RS00175 0.25 +1.1 45,126 + LRK53_RS00175 0.25 -0.1 45,126 + LRK53_RS00175 0.25 +0.1 45,127 - LRK53_RS00175 0.25 +0.1 45,156 + LRK53_RS00175 0.26 -1.2 45,156 + LRK53_RS00175 0.26 -1.5 45,156 + LRK53_RS00175 0.26 -0.5 45,156 + LRK53_RS00175 0.26 +0.1 45,157 - LRK53_RS00175 0.26 +2.1 45,157 - LRK53_RS00175 0.26 -0.5 45,157 - LRK53_RS00175 0.26 -0.2 45,291 + LRK53_RS00175 0.34 +1.1 45,291 + LRK53_RS00175 0.34 -1.1 45,291 + LRK53_RS00175 0.34 +0.1 45,291 + LRK53_RS00175 0.34 -0.5 45,291 + LRK53_RS00175 0.34 -0.2 45,291 + LRK53_RS00175 0.34 +1.1 45,291 + LRK53_RS00175 0.34 -2.1 45,291 + LRK53_RS00175 0.34 -1.7 45,292 - LRK53_RS00175 0.34 -1.9 45,292 - LRK53_RS00175 0.34 -0.7 45,292 - LRK53_RS00175 0.34 -0.2 45,292 - LRK53_RS00175 0.34 +0.1 45,292 - LRK53_RS00175 0.34 -1.2 45,292 - LRK53_RS00175 0.34 +1.1 45,394 - LRK53_RS00175 0.40 -1.8 45,426 + LRK53_RS00175 0.42 +0.1 45,426 + LRK53_RS00175 0.42 -1.5 45,426 + LRK53_RS00175 0.42 -0.4 45,426 + LRK53_RS00175 0.42 +0.1 45,426 + LRK53_RS00175 0.42 +0.8 45,426 + LRK53_RS00175 0.42 +0.1 45,426 + LRK53_RS00175 0.42 -0.6 45,426 + LRK53_RS00175 0.42 -0.1 45,427 - LRK53_RS00175 0.42 -1.6 45,427 - LRK53_RS00175 0.42 +0.1 45,427 - LRK53_RS00175 0.42 -1.2 45,427 - LRK53_RS00175 0.42 -0.8 45,427 - LRK53_RS00175 0.42 +0.1 45,427 - LRK53_RS00175 0.42 -1.5 45,427 - LRK53_RS00175 0.42 +1.1 45,427 - LRK53_RS00175 0.42 +2.1 45,483 + LRK53_RS00175 0.45 -0.3 45,483 + LRK53_RS00175 0.45 -0.5 45,483 + LRK53_RS00175 0.45 +0.1 45,483 + LRK53_RS00175 0.45 +0.3 45,483 + LRK53_RS00175 0.45 -1.6 45,483 + LRK53_RS00175 0.45 -1.9 45,483 + LRK53_RS00175 0.45 -0.7 45,484 - LRK53_RS00175 0.45 -0.5 45,484 - LRK53_RS00175 0.45 +2.1 45,486 + LRK53_RS00175 0.45 +0.7 45,486 + LRK53_RS00175 0.45 -2.4 45,486 + LRK53_RS00175 0.45 -1.5 45,486 + LRK53_RS00175 0.45 +0.1 45,487 - LRK53_RS00175 0.45 -0.7 45,487 - LRK53_RS00175 0.45 -0.5 45,487 - LRK53_RS00175 0.45 -0.5 45,487 - LRK53_RS00175 0.45 +1.1 45,507 + LRK53_RS00175 0.46 -1.1 45,507 + LRK53_RS00175 0.46 -1.7 45,507 + LRK53_RS00175 0.46 -0.5 45,507 + LRK53_RS00175 0.46 +0.5 45,507 + LRK53_RS00175 0.46 -0.9 45,507 + LRK53_RS00175 0.46 -0.2 45,507 + LRK53_RS00175 0.46 +1.1 45,507 + LRK53_RS00175 0.46 +0.1 45,507 + LRK53_RS00175 0.46 -0.9 45,507 + LRK53_RS00175 0.46 -0.9 45,508 - LRK53_RS00175 0.46 -0.9 45,508 - LRK53_RS00175 0.46 -0.7
Or see this region's nucleotide sequence