Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15650

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15645 and LRK53_RS15650 are separated by 4 nucleotidesLRK53_RS15650 and LRK53_RS15655 are separated by 149 nucleotides LRK53_RS15645: LRK53_RS15645 - AI-2E family transporter, at 3,427,601 to 3,428,770 _RS15645 LRK53_RS15650: LRK53_RS15650 - DUF2066 domain-containing protein, at 3,428,775 to 3,429,755 _RS15650 LRK53_RS15655: LRK53_RS15655 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,429,905 to 3,430,933 _RS15655 Position (kb) 3428 3429 3430Strain fitness (log2 ratio) -3 -2 -1 0 1at 3427.900 kb on - strand, within LRK53_RS15645at 3427.900 kb on - strand, within LRK53_RS15645at 3428.020 kb on - strand, within LRK53_RS15645at 3428.020 kb on - strand, within LRK53_RS15645at 3428.020 kb on - strand, within LRK53_RS15645at 3428.101 kb on - strand, within LRK53_RS15645at 3428.182 kb on - strand, within LRK53_RS15645at 3428.260 kb on - strand, within LRK53_RS15645at 3428.260 kb on - strand, within LRK53_RS15645at 3428.453 kb on + strand, within LRK53_RS15645at 3428.453 kb on + strand, within LRK53_RS15645at 3428.453 kb on + strand, within LRK53_RS15645at 3428.453 kb on + strand, within LRK53_RS15645at 3428.454 kb on - strand, within LRK53_RS15645at 3428.454 kb on - strand, within LRK53_RS15645at 3428.454 kb on - strand, within LRK53_RS15645at 3428.454 kb on - strand, within LRK53_RS15645at 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.678 kb on - strandat 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.893 kb on + strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.894 kb on - strand, within LRK53_RS15650at 3428.980 kb on + strand, within LRK53_RS15650at 3428.980 kb on + strand, within LRK53_RS15650at 3428.981 kb on - strand, within LRK53_RS15650at 3429.211 kb on + strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.402 kb on - strand, within LRK53_RS15650at 3429.545 kb on - strand, within LRK53_RS15650at 3429.870 kb on + strandat 3429.923 kb on + strandat 3429.924 kb on - strandat 3429.924 kb on - strandat 3430.062 kb on - strand, within LRK53_RS15655at 3430.220 kb on + strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.344 kb on - strand, within LRK53_RS15655at 3430.344 kb on - strand, within LRK53_RS15655at 3430.344 kb on - strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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3,427,900 - LRK53_RS15645 0.26 +1.0
3,427,900 - LRK53_RS15645 0.26 +1.0
3,428,020 - LRK53_RS15645 0.36 +0.0
3,428,020 - LRK53_RS15645 0.36 -1.0
3,428,020 - LRK53_RS15645 0.36 +0.4
3,428,101 - LRK53_RS15645 0.43 -0.5
3,428,182 - LRK53_RS15645 0.50 -1.6
3,428,260 - LRK53_RS15645 0.56 -2.3
3,428,260 - LRK53_RS15645 0.56 +1.0
3,428,453 + LRK53_RS15645 0.73 -1.0
3,428,453 + LRK53_RS15645 0.73 +0.0
3,428,453 + LRK53_RS15645 0.73 +0.0
3,428,453 + LRK53_RS15645 0.73 +1.0
3,428,454 - LRK53_RS15645 0.73 -1.8
3,428,454 - LRK53_RS15645 0.73 -0.3
3,428,454 - LRK53_RS15645 0.73 -0.7
3,428,454 - LRK53_RS15645 0.73 +0.1
3,428,678 - +1.0
3,428,678 - -0.7
3,428,678 - +1.0
3,428,678 - -0.3
3,428,678 - +0.0
3,428,678 - -0.4
3,428,678 - +1.0
3,428,678 - -0.6
3,428,678 - -0.4
3,428,893 + LRK53_RS15650 0.12 -1.3
3,428,893 + LRK53_RS15650 0.12 -1.3
3,428,893 + LRK53_RS15650 0.12 -0.9
3,428,893 + LRK53_RS15650 0.12 -1.5
3,428,893 + LRK53_RS15650 0.12 +0.0
3,428,893 + LRK53_RS15650 0.12 -1.6
3,428,893 + LRK53_RS15650 0.12 -1.2
3,428,893 + LRK53_RS15650 0.12 +1.0
3,428,893 + LRK53_RS15650 0.12 -1.1
3,428,893 + LRK53_RS15650 0.12 -3.6
3,428,893 + LRK53_RS15650 0.12 +1.0
3,428,893 + LRK53_RS15650 0.12 -1.3
3,428,893 + LRK53_RS15650 0.12 -1.6
3,428,893 + LRK53_RS15650 0.12 +1.0
3,428,893 + LRK53_RS15650 0.12 -1.0
3,428,893 + LRK53_RS15650 0.12 -0.3
3,428,893 + LRK53_RS15650 0.12 -1.3
3,428,893 + LRK53_RS15650 0.12 -0.6
3,428,893 + LRK53_RS15650 0.12 -1.6
3,428,893 + LRK53_RS15650 0.12 -1.3
3,428,893 + LRK53_RS15650 0.12 -2.3
3,428,894 - LRK53_RS15650 0.12 -1.3
3,428,894 - LRK53_RS15650 0.12 +1.6
3,428,894 - LRK53_RS15650 0.12 -1.4
3,428,894 - LRK53_RS15650 0.12 -1.6
3,428,894 - LRK53_RS15650 0.12 +1.0
3,428,894 - LRK53_RS15650 0.12 -0.9
3,428,894 - LRK53_RS15650 0.12 +0.6
3,428,894 - LRK53_RS15650 0.12 +0.0
3,428,894 - LRK53_RS15650 0.12 -1.0
3,428,894 - LRK53_RS15650 0.12 +0.0
3,428,894 - LRK53_RS15650 0.12 +1.0
3,428,894 - LRK53_RS15650 0.12 -1.4
3,428,894 - LRK53_RS15650 0.12 +1.0
3,428,980 + LRK53_RS15650 0.21 -1.0
3,428,980 + LRK53_RS15650 0.21 +0.7
3,428,981 - LRK53_RS15650 0.21 -0.9
3,429,211 + LRK53_RS15650 0.44 +1.0
3,429,212 - LRK53_RS15650 0.45 -0.9
3,429,212 - LRK53_RS15650 0.45 -1.5
3,429,212 - LRK53_RS15650 0.45 -1.3
3,429,402 - LRK53_RS15650 0.64 -0.8
3,429,545 - LRK53_RS15650 0.78 -0.6
3,429,870 + -0.6
3,429,923 + +1.6
3,429,924 - -0.9
3,429,924 - -1.4
3,430,062 - LRK53_RS15655 0.15 -2.2
3,430,220 + LRK53_RS15655 0.31 +0.0
3,430,221 - LRK53_RS15655 0.31 +0.0
3,430,221 - LRK53_RS15655 0.31 +1.0
3,430,221 - LRK53_RS15655 0.31 +1.0
3,430,221 - LRK53_RS15655 0.31 -1.3
3,430,221 - LRK53_RS15655 0.31 -0.7
3,430,221 - LRK53_RS15655 0.31 +0.0
3,430,221 - LRK53_RS15655 0.31 +0.6
3,430,343 + LRK53_RS15655 0.43 -0.6
3,430,343 + LRK53_RS15655 0.43 -1.0
3,430,343 + LRK53_RS15655 0.43 -1.6
3,430,343 + LRK53_RS15655 0.43 -1.6
3,430,343 + LRK53_RS15655 0.43 +0.0
3,430,343 + LRK53_RS15655 0.43 -0.6
3,430,343 + LRK53_RS15655 0.43 +0.0
3,430,343 + LRK53_RS15655 0.43 -1.9
3,430,343 + LRK53_RS15655 0.43 -1.0
3,430,344 - LRK53_RS15655 0.43 +0.0
3,430,344 - LRK53_RS15655 0.43 +1.0
3,430,344 - LRK53_RS15655 0.43 -0.8
3,430,358 + LRK53_RS15655 0.44 +0.4
3,430,358 + LRK53_RS15655 0.44 -1.2
3,430,358 + LRK53_RS15655 0.44 -0.6
3,430,358 + LRK53_RS15655 0.44 -0.3
3,430,358 + LRK53_RS15655 0.44 +0.0
3,430,358 + LRK53_RS15655 0.44 -1.2
3,430,580 + LRK53_RS15655 0.66 -0.6
3,430,580 + LRK53_RS15655 0.66 -0.3
3,430,580 + LRK53_RS15655 0.66 +1.0
3,430,580 + LRK53_RS15655 0.66 -0.8
3,430,580 + LRK53_RS15655 0.66 +0.0
3,430,580 + LRK53_RS15655 0.66 +0.0
3,430,580 + LRK53_RS15655 0.66 -1.6
3,430,580 + LRK53_RS15655 0.66 -0.3
3,430,581 - LRK53_RS15655 0.66 -2.0
3,430,581 - LRK53_RS15655 0.66 -0.6
3,430,581 - LRK53_RS15655 0.66 +0.4
3,430,581 - LRK53_RS15655 0.66 -0.6
3,430,581 - LRK53_RS15655 0.66 -1.0
3,430,581 - LRK53_RS15655 0.66 +0.0
3,430,581 - LRK53_RS15655 0.66 -2.0

Or see this region's nucleotide sequence