Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01460

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01450 and LRK53_RS01455 are separated by 2 nucleotidesLRK53_RS01455 and LRK53_RS01460 are separated by 69 nucleotidesLRK53_RS01460 and LRK53_RS01465 are separated by 255 nucleotides LRK53_RS01450: LRK53_RS01450 - EF-hand domain-containing protein, at 348,961 to 349,284 _RS01450 LRK53_RS01455: LRK53_RS01455 - GTP cyclohydrolase I FolE, at 349,287 to 349,892 _RS01455 LRK53_RS01460: LRK53_RS01460 - DNA recombination protein RmuC, at 349,962 to 351,491 _RS01460 LRK53_RS01465: LRK53_RS01465 - FAD-dependent oxidoreductase, at 351,747 to 352,940 _RS01465 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.998 kb on + strand, within LRK53_RS01450at 348.998 kb on + strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 349.052 kb on + strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.163 kb on + strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.215 kb on - strand, within LRK53_RS01450at 349.892 kb on + strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.919 kb on + strandat 349.920 kb on - strandat 349.991 kb on + strandat 349.992 kb on - strandat 349.992 kb on - strandat 349.992 kb on - strandat 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.300 kb on - strand, within LRK53_RS01460at 350.300 kb on - strand, within LRK53_RS01460at 350.316 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.331 kb on - strand, within LRK53_RS01460at 350.368 kb on + strand, within LRK53_RS01460at 350.461 kb on + strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.473 kb on + strand, within LRK53_RS01460at 350.473 kb on + strand, within LRK53_RS01460at 350.474 kb on - strand, within LRK53_RS01460at 350.474 kb on - strand, within LRK53_RS01460at 350.579 kb on - strand, within LRK53_RS01460at 350.715 kb on + strand, within LRK53_RS01460at 350.715 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.075 kb on - strand, within LRK53_RS01460at 351.338 kb on - strand, within LRK53_RS01460at 351.423 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.535 kb on + strandat 351.536 kb on - strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.765 kb on + strandat 351.765 kb on + strandat 351.765 kb on + strandat 351.766 kb on - strandat 351.766 kb on - strandat 351.873 kb on + strand, within LRK53_RS01465at 351.968 kb on + strand, within LRK53_RS01465at 351.969 kb on - strand, within LRK53_RS01465at 351.969 kb on - strand, within LRK53_RS01465at 352.035 kb on + strand, within LRK53_RS01465at 352.035 kb on + strand, within LRK53_RS01465at 352.134 kb on + strand, within LRK53_RS01465at 352.284 kb on + strand, within LRK53_RS01465at 352.305 kb on + strand, within LRK53_RS01465at 352.306 kb on - strand, within LRK53_RS01465at 352.306 kb on - strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.320 kb on + strand, within LRK53_RS01465at 352.321 kb on - strand, within LRK53_RS01465at 352.321 kb on - strand, within LRK53_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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348,998 + LRK53_RS01450 0.11 +0.1
348,998 + LRK53_RS01450 0.11 -0.5
348,999 - LRK53_RS01450 0.12 -1.7
348,999 - LRK53_RS01450 0.12 +0.5
349,052 + LRK53_RS01450 0.28 -1.9
349,053 - LRK53_RS01450 0.28 +1.1
349,053 - LRK53_RS01450 0.28 +0.3
349,053 - LRK53_RS01450 0.28 +1.1
349,053 - LRK53_RS01450 0.28 +0.1
349,154 + LRK53_RS01450 0.60 -1.7
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 +0.1
349,154 + LRK53_RS01450 0.60 -0.5
349,154 + LRK53_RS01450 0.60 +0.1
349,154 + LRK53_RS01450 0.60 -1.2
349,154 + LRK53_RS01450 0.60 -0.2
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -1.2
349,154 + LRK53_RS01450 0.60 -1.9
349,154 + LRK53_RS01450 0.60 -0.7
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 +0.1
349,154 + LRK53_RS01450 0.60 +0.1
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 -0.7
349,154 + LRK53_RS01450 0.60 +0.7
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -1.9
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -0.5
349,154 + LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 +0.1
349,155 - LRK53_RS01450 0.60 +0.1
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 -0.9
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -0.9
349,155 - LRK53_RS01450 0.60 +0.7
349,155 - LRK53_RS01450 0.60 -0.7
349,155 - LRK53_RS01450 0.60 -0.2
349,155 - LRK53_RS01450 0.60 -1.7
349,155 - LRK53_RS01450 0.60 -1.5
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 +1.1
349,155 - LRK53_RS01450 0.60 -0.8
349,155 - LRK53_RS01450 0.60 -1.2
349,155 - LRK53_RS01450 0.60 -0.9
349,155 - LRK53_RS01450 0.60 +0.4
349,155 - LRK53_RS01450 0.60 -1.2
349,155 - LRK53_RS01450 0.60 -1.4
349,155 - LRK53_RS01450 0.60 +0.5
349,155 - LRK53_RS01450 0.60 +0.5
349,155 - LRK53_RS01450 0.60 -1.3
349,163 + LRK53_RS01450 0.62 -0.3
349,164 - LRK53_RS01450 0.63 -1.2
349,164 - LRK53_RS01450 0.63 -0.2
349,215 - LRK53_RS01450 0.78 +0.3
349,892 + -0.5
349,893 - -0.1
349,893 - -0.5
349,893 - -1.4
349,893 - -0.2
349,893 - -1.1
349,893 - -0.7
349,893 - -1.9
349,893 - -1.0
349,893 - -0.1
349,919 + -1.9
349,920 - -1.1
349,991 + -1.4
349,992 - -1.1
349,992 - -1.4
349,992 - -1.1
350,233 + LRK53_RS01460 0.18 -2.5
350,233 + LRK53_RS01460 0.18 -1.0
350,233 + LRK53_RS01460 0.18 -0.5
350,233 + LRK53_RS01460 0.18 -1.7
350,233 + LRK53_RS01460 0.18 -0.2
350,233 + LRK53_RS01460 0.18 -0.2
350,233 + LRK53_RS01460 0.18 +1.1
350,234 - LRK53_RS01460 0.18 +1.1
350,234 - LRK53_RS01460 0.18 -1.5
350,234 - LRK53_RS01460 0.18 -1.1
350,234 - LRK53_RS01460 0.18 +0.1
350,234 - LRK53_RS01460 0.18 -1.2
350,234 - LRK53_RS01460 0.18 -0.9
350,299 + LRK53_RS01460 0.22 -0.1
350,299 + LRK53_RS01460 0.22 -1.2
350,299 + LRK53_RS01460 0.22 +1.1
350,299 + LRK53_RS01460 0.22 +1.1
350,300 - LRK53_RS01460 0.22 -1.6
350,300 - LRK53_RS01460 0.22 +0.1
350,316 + LRK53_RS01460 0.23 +0.1
350,330 + LRK53_RS01460 0.24 -1.2
350,330 + LRK53_RS01460 0.24 -2.5
350,330 + LRK53_RS01460 0.24 -0.5
350,331 - LRK53_RS01460 0.24 -0.5
350,368 + LRK53_RS01460 0.27 +0.1
350,461 + LRK53_RS01460 0.33 +0.1
350,462 - LRK53_RS01460 0.33 +0.1
350,462 - LRK53_RS01460 0.33 -0.9
350,462 - LRK53_RS01460 0.33 -0.9
350,462 - LRK53_RS01460 0.33 +1.1
350,462 - LRK53_RS01460 0.33 +2.1
350,473 + LRK53_RS01460 0.33 -0.5
350,473 + LRK53_RS01460 0.33 +0.1
350,474 - LRK53_RS01460 0.33 -1.2
350,474 - LRK53_RS01460 0.33 -2.1
350,579 - LRK53_RS01460 0.40 +1.1
350,715 + LRK53_RS01460 0.49 +0.5
350,715 + LRK53_RS01460 0.49 -0.9
351,074 + LRK53_RS01460 0.73 -0.5
351,074 + LRK53_RS01460 0.73 +1.1
351,074 + LRK53_RS01460 0.73 +0.1
351,074 + LRK53_RS01460 0.73 +1.1
351,074 + LRK53_RS01460 0.73 -0.9
351,074 + LRK53_RS01460 0.73 +1.1
351,075 - LRK53_RS01460 0.73 -2.1
351,338 - LRK53_RS01460 0.90 +2.1
351,423 + +0.1
351,447 + +0.5
351,447 + -0.5
351,447 + -0.0
351,447 + -0.7
351,535 + -1.2
351,536 - -1.5
351,655 + +0.1
351,655 + -0.8
351,655 + +0.1
351,655 + -2.7
351,655 + +0.5
351,655 + -0.9
351,655 + -1.2
351,655 + -0.7
351,656 - +0.1
351,656 - -1.2
351,656 - +1.1
351,656 - -0.7
351,656 - -0.7
351,656 - +0.1
351,656 - -0.7
351,656 - -0.1
351,656 - +0.1
351,656 - -1.0
351,656 - -1.9
351,656 - -3.1
351,656 - +0.1
351,765 + +0.1
351,765 + +0.1
351,765 + +0.1
351,766 - -0.5
351,766 - -0.9
351,873 + LRK53_RS01465 0.11 -0.8
351,968 + LRK53_RS01465 0.19 -0.5
351,969 - LRK53_RS01465 0.19 -0.3
351,969 - LRK53_RS01465 0.19 -0.7
352,035 + LRK53_RS01465 0.24 +0.3
352,035 + LRK53_RS01465 0.24 -0.5
352,134 + LRK53_RS01465 0.32 +1.1
352,284 + LRK53_RS01465 0.45 -0.3
352,305 + LRK53_RS01465 0.47 +1.1
352,306 - LRK53_RS01465 0.47 -0.3
352,306 - LRK53_RS01465 0.47 -2.2
352,317 + LRK53_RS01465 0.48 -0.9
352,317 + LRK53_RS01465 0.48 -0.7
352,317 + LRK53_RS01465 0.48 -2.4
352,317 + LRK53_RS01465 0.48 -0.5
352,317 + LRK53_RS01465 0.48 +0.1
352,317 + LRK53_RS01465 0.48 -0.9
352,317 + LRK53_RS01465 0.48 +1.1
352,317 + LRK53_RS01465 0.48 -0.5
352,318 - LRK53_RS01465 0.48 -0.5
352,318 - LRK53_RS01465 0.48 -0.7
352,318 - LRK53_RS01465 0.48 +1.1
352,318 - LRK53_RS01465 0.48 -0.5
352,318 - LRK53_RS01465 0.48 -1.9
352,318 - LRK53_RS01465 0.48 -0.6
352,318 - LRK53_RS01465 0.48 -0.8
352,318 - LRK53_RS01465 0.48 -1.2
352,320 + LRK53_RS01465 0.48 -0.5
352,321 - LRK53_RS01465 0.48 +0.1
352,321 - LRK53_RS01465 0.48 +0.1

Or see this region's nucleotide sequence