Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01340

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01335 and LRK53_RS01340 are separated by 9 nucleotidesLRK53_RS01340 and LRK53_RS01345 are separated by 118 nucleotides LRK53_RS01335: LRK53_RS01335 - bile acid:sodium symporter, at 328,174 to 329,169 _RS01335 LRK53_RS01340: LRK53_RS01340 - DedA family protein, at 329,179 to 329,799 _RS01340 LRK53_RS01345: LRK53_RS01345 - DNA primase, at 329,918 to 331,711 _RS01345 Position (kb) 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 328.220 kb on + strandat 328.221 kb on - strandat 328.431 kb on + strand, within LRK53_RS01335at 328.431 kb on + strand, within LRK53_RS01335at 328.431 kb on + strand, within LRK53_RS01335at 328.431 kb on + strand, within LRK53_RS01335at 328.431 kb on + strand, within LRK53_RS01335at 328.431 kb on + strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.432 kb on - strand, within LRK53_RS01335at 328.541 kb on + strand, within LRK53_RS01335at 328.541 kb on + strand, within LRK53_RS01335at 328.541 kb on + strand, within LRK53_RS01335at 328.542 kb on - strand, within LRK53_RS01335at 328.542 kb on - strand, within LRK53_RS01335at 328.542 kb on - strand, within LRK53_RS01335at 328.542 kb on - strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.871 kb on + strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 328.872 kb on - strand, within LRK53_RS01335at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.324 kb on + strand, within LRK53_RS01340at 329.325 kb on - strand, within LRK53_RS01340at 329.325 kb on - strand, within LRK53_RS01340at 329.325 kb on - strand, within LRK53_RS01340at 329.325 kb on - strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.333 kb on + strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.334 kb on - strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.426 kb on + strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.427 kb on - strand, within LRK53_RS01340at 329.484 kb on - strand, within LRK53_RS01340at 329.513 kb on + strand, within LRK53_RS01340at 329.513 kb on + strand, within LRK53_RS01340at 329.513 kb on + strand, within LRK53_RS01340at 329.513 kb on + strand, within LRK53_RS01340at 329.514 kb on - strand, within LRK53_RS01340at 329.514 kb on - strand, within LRK53_RS01340at 329.514 kb on - strand, within LRK53_RS01340at 329.570 kb on + strand, within LRK53_RS01340at 329.571 kb on - strand, within LRK53_RS01340at 329.571 kb on - strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.640 kb on + strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.641 kb on - strand, within LRK53_RS01340at 329.654 kb on + strand, within LRK53_RS01340at 329.655 kb on - strand, within LRK53_RS01340at 329.753 kb on + strandat 329.753 kb on + strandat 329.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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328,220 + -1.7
328,221 - -1.0
328,431 + LRK53_RS01335 0.26 -1.8
328,431 + LRK53_RS01335 0.26 -1.0
328,431 + LRK53_RS01335 0.26 -0.5
328,431 + LRK53_RS01335 0.26 -0.5
328,431 + LRK53_RS01335 0.26 -0.5
328,431 + LRK53_RS01335 0.26 -1.5
328,432 - LRK53_RS01335 0.26 +1.5
328,432 - LRK53_RS01335 0.26 -0.2
328,432 - LRK53_RS01335 0.26 -1.7
328,432 - LRK53_RS01335 0.26 -1.2
328,432 - LRK53_RS01335 0.26 +0.2
328,432 - LRK53_RS01335 0.26 +0.0
328,432 - LRK53_RS01335 0.26 -0.1
328,541 + LRK53_RS01335 0.37 +0.0
328,541 + LRK53_RS01335 0.37 +0.4
328,541 + LRK53_RS01335 0.37 +0.0
328,542 - LRK53_RS01335 0.37 -0.2
328,542 - LRK53_RS01335 0.37 +2.6
328,542 - LRK53_RS01335 0.37 +0.0
328,542 - LRK53_RS01335 0.37 -0.3
328,871 + LRK53_RS01335 0.70 -1.3
328,871 + LRK53_RS01335 0.70 -0.5
328,871 + LRK53_RS01335 0.70 -0.9
328,871 + LRK53_RS01335 0.70 +1.0
328,871 + LRK53_RS01335 0.70 -0.8
328,871 + LRK53_RS01335 0.70 -0.3
328,871 + LRK53_RS01335 0.70 -0.5
328,871 + LRK53_RS01335 0.70 +0.1
328,871 + LRK53_RS01335 0.70 +0.5
328,871 + LRK53_RS01335 0.70 -1.6
328,872 - LRK53_RS01335 0.70 -1.2
328,872 - LRK53_RS01335 0.70 +1.0
328,872 - LRK53_RS01335 0.70 +0.0
328,872 - LRK53_RS01335 0.70 -1.0
328,872 - LRK53_RS01335 0.70 +1.0
328,872 - LRK53_RS01335 0.70 -1.8
328,872 - LRK53_RS01335 0.70 -0.7
328,872 - LRK53_RS01335 0.70 -0.2
328,872 - LRK53_RS01335 0.70 -2.5
328,872 - LRK53_RS01335 0.70 -1.0
328,872 - LRK53_RS01335 0.70 +2.4
328,872 - LRK53_RS01335 0.70 -1.0
329,324 + LRK53_RS01340 0.23 -1.5
329,324 + LRK53_RS01340 0.23 -0.5
329,324 + LRK53_RS01340 0.23 -1.5
329,324 + LRK53_RS01340 0.23 -2.5
329,324 + LRK53_RS01340 0.23 -1.3
329,324 + LRK53_RS01340 0.23 -2.1
329,324 + LRK53_RS01340 0.23 -1.2
329,324 + LRK53_RS01340 0.23 -0.9
329,324 + LRK53_RS01340 0.23 -1.6
329,324 + LRK53_RS01340 0.23 -0.8
329,325 - LRK53_RS01340 0.24 +1.1
329,325 - LRK53_RS01340 0.24 +1.1
329,325 - LRK53_RS01340 0.24 -1.9
329,325 - LRK53_RS01340 0.24 -1.3
329,333 + LRK53_RS01340 0.25 +0.1
329,333 + LRK53_RS01340 0.25 -2.1
329,333 + LRK53_RS01340 0.25 -1.6
329,333 + LRK53_RS01340 0.25 +1.1
329,333 + LRK53_RS01340 0.25 -0.0
329,333 + LRK53_RS01340 0.25 -0.3
329,333 + LRK53_RS01340 0.25 +1.1
329,333 + LRK53_RS01340 0.25 -1.3
329,333 + LRK53_RS01340 0.25 -0.9
329,333 + LRK53_RS01340 0.25 -2.7
329,333 + LRK53_RS01340 0.25 -0.8
329,333 + LRK53_RS01340 0.25 -2.3
329,334 - LRK53_RS01340 0.25 -1.5
329,334 - LRK53_RS01340 0.25 +1.1
329,334 - LRK53_RS01340 0.25 -0.5
329,334 - LRK53_RS01340 0.25 +0.5
329,334 - LRK53_RS01340 0.25 +1.1
329,334 - LRK53_RS01340 0.25 -0.9
329,334 - LRK53_RS01340 0.25 +0.1
329,334 - LRK53_RS01340 0.25 +0.5
329,334 - LRK53_RS01340 0.25 -2.4
329,426 + LRK53_RS01340 0.40 -0.5
329,426 + LRK53_RS01340 0.40 -1.8
329,426 + LRK53_RS01340 0.40 -1.4
329,426 + LRK53_RS01340 0.40 -0.9
329,426 + LRK53_RS01340 0.40 -1.7
329,426 + LRK53_RS01340 0.40 -0.8
329,426 + LRK53_RS01340 0.40 -1.3
329,426 + LRK53_RS01340 0.40 -1.5
329,426 + LRK53_RS01340 0.40 -1.1
329,427 - LRK53_RS01340 0.40 -0.1
329,427 - LRK53_RS01340 0.40 -2.1
329,427 - LRK53_RS01340 0.40 +1.1
329,427 - LRK53_RS01340 0.40 -0.5
329,427 - LRK53_RS01340 0.40 -1.5
329,427 - LRK53_RS01340 0.40 -1.9
329,427 - LRK53_RS01340 0.40 -1.1
329,484 - LRK53_RS01340 0.49 -0.9
329,513 + LRK53_RS01340 0.54 -0.9
329,513 + LRK53_RS01340 0.54 -0.3
329,513 + LRK53_RS01340 0.54 +0.1
329,513 + LRK53_RS01340 0.54 -1.3
329,514 - LRK53_RS01340 0.54 -1.3
329,514 - LRK53_RS01340 0.54 +1.1
329,514 - LRK53_RS01340 0.54 -0.1
329,570 + LRK53_RS01340 0.63 +1.1
329,571 - LRK53_RS01340 0.63 -0.9
329,571 - LRK53_RS01340 0.63 -0.5
329,640 + LRK53_RS01340 0.74 -0.9
329,640 + LRK53_RS01340 0.74 -1.9
329,640 + LRK53_RS01340 0.74 -0.9
329,640 + LRK53_RS01340 0.74 -2.4
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 -0.9
329,640 + LRK53_RS01340 0.74 +2.1
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -0.7
329,640 + LRK53_RS01340 0.74 -1.5
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -1.8
329,640 + LRK53_RS01340 0.74 -0.5
329,640 + LRK53_RS01340 0.74 -2.5
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -2.4
329,640 + LRK53_RS01340 0.74 +0.5
329,640 + LRK53_RS01340 0.74 -1.5
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -0.9
329,640 + LRK53_RS01340 0.74 -1.3
329,640 + LRK53_RS01340 0.74 -0.3
329,640 + LRK53_RS01340 0.74 -0.3
329,640 + LRK53_RS01340 0.74 -1.4
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 -0.5
329,640 + LRK53_RS01340 0.74 -0.5
329,640 + LRK53_RS01340 0.74 -2.9
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -1.5
329,640 + LRK53_RS01340 0.74 -0.2
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 -1.5
329,640 + LRK53_RS01340 0.74 -0.5
329,640 + LRK53_RS01340 0.74 -0.9
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 -0.5
329,640 + LRK53_RS01340 0.74 -1.8
329,640 + LRK53_RS01340 0.74 +1.1
329,640 + LRK53_RS01340 0.74 +0.1
329,640 + LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -3.0
329,641 - LRK53_RS01340 0.74 -1.9
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 +2.1
329,641 - LRK53_RS01340 0.74 -0.8
329,641 - LRK53_RS01340 0.74 -0.9
329,641 - LRK53_RS01340 0.74 -0.4
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -0.9
329,641 - LRK53_RS01340 0.74 +0.1
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -0.3
329,641 - LRK53_RS01340 0.74 -0.3
329,641 - LRK53_RS01340 0.74 -1.3
329,641 - LRK53_RS01340 0.74 +0.2
329,641 - LRK53_RS01340 0.74 -0.8
329,641 - LRK53_RS01340 0.74 -1.8
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -2.4
329,641 - LRK53_RS01340 0.74 -1.5
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -2.1
329,641 - LRK53_RS01340 0.74 -2.1
329,641 - LRK53_RS01340 0.74 -0.9
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -1.5
329,641 - LRK53_RS01340 0.74 -2.7
329,641 - LRK53_RS01340 0.74 -0.9
329,641 - LRK53_RS01340 0.74 -2.7
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -0.8
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 +0.1
329,641 - LRK53_RS01340 0.74 -1.5
329,641 - LRK53_RS01340 0.74 -0.8
329,641 - LRK53_RS01340 0.74 -1.4
329,641 - LRK53_RS01340 0.74 -2.1
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 -1.5
329,641 - LRK53_RS01340 0.74 -1.4
329,641 - LRK53_RS01340 0.74 -0.1
329,641 - LRK53_RS01340 0.74 +1.1
329,641 - LRK53_RS01340 0.74 +0.1
329,641 - LRK53_RS01340 0.74 -1.1
329,654 + LRK53_RS01340 0.76 -0.4
329,655 - LRK53_RS01340 0.77 +0.1
329,753 + +0.1
329,753 + -0.8
329,754 - +0.3

Or see this region's nucleotide sequence