Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00910

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00900 and LRK53_RS00905 overlap by 4 nucleotidesLRK53_RS00905 and LRK53_RS00910 are separated by 297 nucleotidesLRK53_RS00910 and LRK53_RS00915 overlap by 1 nucleotidesLRK53_RS00915 and LRK53_RS00920 overlap by 4 nucleotides LRK53_RS00900: LRK53_RS00900 - ATP-binding protein, at 227,891 to 229,312 _RS00900 LRK53_RS00905: LRK53_RS00905 - response regulator, at 229,309 to 229,974 _RS00905 LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166 _RS00910 LRK53_RS00915: LRK53_RS00915 - Na+/H+ antiporter subunit C, at 233,166 to 233,507 _RS00915 LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099 _RS00920 Position (kb) 230 231 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 229.334 kb on + strandat 229.334 kb on + strandat 229.334 kb on + strandat 229.335 kb on - strandat 229.335 kb on - strandat 229.439 kb on + strand, within LRK53_RS00905at 229.440 kb on - strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.770 kb on + strand, within LRK53_RS00905at 229.770 kb on + strand, within LRK53_RS00905at 229.771 kb on - strand, within LRK53_RS00905at 229.771 kb on - strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.900 kb on - strand, within LRK53_RS00905at 229.901 kb on + strand, within LRK53_RS00905at 229.902 kb on - strand, within LRK53_RS00905at 230.090 kb on - strandat 230.090 kb on - strandat 230.090 kb on - strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.092 kb on - strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.561 kb on - strandat 230.561 kb on - strandat 230.561 kb on - strandat 230.570 kb on - strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.606 kb on - strand, within LRK53_RS00910at 230.606 kb on - strand, within LRK53_RS00910at 230.723 kb on - strand, within LRK53_RS00910at 230.826 kb on + strand, within LRK53_RS00910at 230.827 kb on - strand, within LRK53_RS00910at 230.839 kb on + strand, within LRK53_RS00910at 230.839 kb on + strand, within LRK53_RS00910at 230.839 kb on + strand, within LRK53_RS00910at 230.839 kb on + strand, within LRK53_RS00910at 230.839 kb on + strand, within LRK53_RS00910at 230.840 kb on - strand, within LRK53_RS00910at 230.893 kb on + strand, within LRK53_RS00910at 230.893 kb on + strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910at 231.004 kb on + strand, within LRK53_RS00910at 231.136 kb on + strand, within LRK53_RS00910at 231.179 kb on - strand, within LRK53_RS00910at 231.550 kb on + strand, within LRK53_RS00910at 231.550 kb on + strand, within LRK53_RS00910at 231.550 kb on + strand, within LRK53_RS00910at 231.550 kb on + strand, within LRK53_RS00910at 231.551 kb on - strand, within LRK53_RS00910at 231.551 kb on - strand, within LRK53_RS00910at 231.760 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.418 kb on - strand, within LRK53_RS00910at 232.477 kb on + strand, within LRK53_RS00910at 232.751 kb on + strand, within LRK53_RS00910at 232.752 kb on - strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 233.197 kb on + strandat 233.198 kb on - strandat 233.198 kb on - strandat 233.198 kb on - strandat 233.274 kb on + strand, within LRK53_RS00915at 233.275 kb on - strand, within LRK53_RS00915at 233.364 kb on + strand, within LRK53_RS00915at 233.687 kb on + strand, within LRK53_RS00920at 233.937 kb on - strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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229,334 + -0.2
229,334 + -1.9
229,334 + -1.5
229,335 - -0.7
229,335 - +0.1
229,439 + LRK53_RS00905 0.20 -0.2
229,440 - LRK53_RS00905 0.20 +0.1
229,682 + LRK53_RS00905 0.56 -0.6
229,682 + LRK53_RS00905 0.56 +1.1
229,682 + LRK53_RS00905 0.56 -1.6
229,682 + LRK53_RS00905 0.56 -0.1
229,682 + LRK53_RS00905 0.56 -1.1
229,682 + LRK53_RS00905 0.56 -1.2
229,683 - LRK53_RS00905 0.56 +0.1
229,683 - LRK53_RS00905 0.56 +0.6
229,683 - LRK53_RS00905 0.56 +0.1
229,683 - LRK53_RS00905 0.56 -0.0
229,770 + LRK53_RS00905 0.69 -0.5
229,770 + LRK53_RS00905 0.69 -0.9
229,771 - LRK53_RS00905 0.69 -1.9
229,771 - LRK53_RS00905 0.69 -1.0
229,899 + LRK53_RS00905 0.89 +1.1
229,899 + LRK53_RS00905 0.89 +0.1
229,899 + LRK53_RS00905 0.89 -0.5
229,899 + LRK53_RS00905 0.89 -0.1
229,899 + LRK53_RS00905 0.89 -0.5
229,899 + LRK53_RS00905 0.89 -0.5
229,899 + LRK53_RS00905 0.89 +1.1
229,900 - LRK53_RS00905 0.89 +1.1
229,901 + LRK53_RS00905 0.89 -1.5
229,902 - LRK53_RS00905 0.89 +0.5
230,090 - -0.9
230,090 - -2.2
230,090 - +0.1
230,091 + -0.1
230,091 + -0.5
230,091 + +1.1
230,091 + -0.5
230,091 + +2.1
230,091 + -0.8
230,092 - -0.1
230,560 + -1.5
230,560 + -0.9
230,560 + -1.5
230,560 + -0.9
230,560 + -1.7
230,560 + -0.9
230,560 + -0.5
230,560 + +0.1
230,561 - +0.1
230,561 - -0.9
230,561 - -1.6
230,570 - LRK53_RS00910 0.10 +0.1
230,572 + LRK53_RS00910 0.10 +0.1
230,572 + LRK53_RS00910 0.10 -1.5
230,572 + LRK53_RS00910 0.10 +0.1
230,572 + LRK53_RS00910 0.10 -0.9
230,572 + LRK53_RS00910 0.10 +0.1
230,572 + LRK53_RS00910 0.10 -1.7
230,572 + LRK53_RS00910 0.10 -1.2
230,572 + LRK53_RS00910 0.10 -0.8
230,572 + LRK53_RS00910 0.10 +1.1
230,572 + LRK53_RS00910 0.10 +1.1
230,572 + LRK53_RS00910 0.10 -0.9
230,573 - LRK53_RS00910 0.10 -1.2
230,573 - LRK53_RS00910 0.10 -1.7
230,573 - LRK53_RS00910 0.10 +1.1
230,573 - LRK53_RS00910 0.10 -1.5
230,573 - LRK53_RS00910 0.10 -1.9
230,573 - LRK53_RS00910 0.10 +0.1
230,573 - LRK53_RS00910 0.10 -0.7
230,573 - LRK53_RS00910 0.10 +1.1
230,605 + LRK53_RS00910 0.12 +0.1
230,605 + LRK53_RS00910 0.12 +0.5
230,606 - LRK53_RS00910 0.12 -0.2
230,606 - LRK53_RS00910 0.12 +2.7
230,723 - LRK53_RS00910 0.16 +0.1
230,826 + LRK53_RS00910 0.19 -2.9
230,827 - LRK53_RS00910 0.19 -0.5
230,839 + LRK53_RS00910 0.20 -0.5
230,839 + LRK53_RS00910 0.20 +1.7
230,839 + LRK53_RS00910 0.20 +0.1
230,839 + LRK53_RS00910 0.20 -0.5
230,839 + LRK53_RS00910 0.20 +0.5
230,840 - LRK53_RS00910 0.20 -1.2
230,893 + LRK53_RS00910 0.21 +2.1
230,893 + LRK53_RS00910 0.21 -0.2
230,894 - LRK53_RS00910 0.21 -0.2
230,894 - LRK53_RS00910 0.21 -0.5
230,894 - LRK53_RS00910 0.21 +2.1
231,004 + LRK53_RS00910 0.25 -0.4
231,136 + LRK53_RS00910 0.30 -0.5
231,179 - LRK53_RS00910 0.31 -2.1
231,550 + LRK53_RS00910 0.44 -1.3
231,550 + LRK53_RS00910 0.44 -2.0
231,550 + LRK53_RS00910 0.44 -0.5
231,550 + LRK53_RS00910 0.44 +0.5
231,551 - LRK53_RS00910 0.44 -0.9
231,551 - LRK53_RS00910 0.44 +0.1
231,760 + LRK53_RS00910 0.51 -1.5
232,417 + LRK53_RS00910 0.74 -1.3
232,417 + LRK53_RS00910 0.74 +0.1
232,417 + LRK53_RS00910 0.74 +0.1
232,417 + LRK53_RS00910 0.74 -0.9
232,417 + LRK53_RS00910 0.74 -0.5
232,418 - LRK53_RS00910 0.74 +1.1
232,477 + LRK53_RS00910 0.76 -0.9
232,751 + LRK53_RS00910 0.86 -0.9
232,752 - LRK53_RS00910 0.86 -1.5
232,852 + LRK53_RS00910 0.89 +0.1
232,852 + LRK53_RS00910 0.89 -1.1
232,852 + LRK53_RS00910 0.89 -1.7
232,852 + LRK53_RS00910 0.89 -0.3
232,852 + LRK53_RS00910 0.89 -0.0
232,852 + LRK53_RS00910 0.89 -1.5
232,852 + LRK53_RS00910 0.89 -2.2
232,852 + LRK53_RS00910 0.89 -0.7
232,853 - LRK53_RS00910 0.89 -2.1
232,853 - LRK53_RS00910 0.89 +1.1
232,853 - LRK53_RS00910 0.89 -0.9
232,853 - LRK53_RS00910 0.89 -1.2
232,853 - LRK53_RS00910 0.89 +0.1
232,853 - LRK53_RS00910 0.89 -1.4
232,853 - LRK53_RS00910 0.89 -3.2
232,853 - LRK53_RS00910 0.89 +0.1
233,197 + +0.1
233,198 - +0.5
233,198 - +1.1
233,198 - +1.1
233,274 + LRK53_RS00915 0.32 -0.5
233,275 - LRK53_RS00915 0.32 +0.8
233,364 + LRK53_RS00915 0.58 -1.4
233,687 + LRK53_RS00920 0.11 +0.1
233,937 - LRK53_RS00920 0.27 -0.2
233,990 + LRK53_RS00920 0.30 -0.8
233,990 + LRK53_RS00920 0.30 +0.1
233,990 + LRK53_RS00920 0.30 -1.1
233,990 + LRK53_RS00920 0.30 -0.5
233,990 + LRK53_RS00920 0.30 -0.5
233,990 + LRK53_RS00920 0.30 +0.1
233,990 + LRK53_RS00920 0.30 -0.5
233,990 + LRK53_RS00920 0.30 +1.1
233,991 - LRK53_RS00920 0.31 -1.9
233,991 - LRK53_RS00920 0.31 +1.1
233,991 - LRK53_RS00920 0.31 -0.3

Or see this region's nucleotide sequence