Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00015

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00010 and LRK53_RS00015 are separated by 96 nucleotidesLRK53_RS00015 and LRK53_RS00020 are separated by 95 nucleotides LRK53_RS00010: LRK53_RS00010 - DNA polymerase III subunit beta, at 1,576 to 2,676 _RS00010 LRK53_RS00015: LRK53_RS00015 - DNA replication/repair protein RecF, at 2,773 to 3,852 _RS00015 LRK53_RS00020: LRK53_RS00020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,948 to 6,380 _RS00020 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.814 kb on + strandat 2.814 kb on + strandat 2.814 kb on + strandat 2.814 kb on + strandat 2.814 kb on + strandat 2.814 kb on + strandat 2.815 kb on - strandat 2.815 kb on - strandat 3.173 kb on - strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.354 kb on + strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.355 kb on - strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.358 kb on + strand, within LRK53_RS00015at 3.359 kb on - strand, within LRK53_RS00015at 3.359 kb on - strand, within LRK53_RS00015at 3.359 kb on - strand, within LRK53_RS00015at 3.359 kb on - strand, within LRK53_RS00015at 3.359 kb on - strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.516 kb on + strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.517 kb on - strand, within LRK53_RS00015at 3.606 kb on + strand, within LRK53_RS00015at 3.607 kb on - strand, within LRK53_RS00015at 3.644 kb on - strand, within LRK53_RS00015at 3.644 kb on - strand, within LRK53_RS00015at 3.644 kb on - strand, within LRK53_RS00015at 3.848 kb on + strandat 3.848 kb on + strandat 3.848 kb on + strandat 3.848 kb on + strandat 3.849 kb on - strandat 3.850 kb on + strandat 3.850 kb on + strandat 3.850 kb on + strandat 3.850 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strandat 3.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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2,814 + +0.1
2,814 + -0.9
2,814 + +2.7
2,814 + -0.9
2,814 + -1.2
2,814 + -2.4
2,815 - -0.2
2,815 - -0.9
3,173 - LRK53_RS00015 0.37 -0.5
3,354 + LRK53_RS00015 0.54 -0.9
3,354 + LRK53_RS00015 0.54 -0.0
3,354 + LRK53_RS00015 0.54 +1.1
3,354 + LRK53_RS00015 0.54 -0.9
3,354 + LRK53_RS00015 0.54 -0.9
3,354 + LRK53_RS00015 0.54 +0.1
3,354 + LRK53_RS00015 0.54 -0.5
3,354 + LRK53_RS00015 0.54 -0.5
3,354 + LRK53_RS00015 0.54 -2.6
3,354 + LRK53_RS00015 0.54 +0.5
3,355 - LRK53_RS00015 0.54 +0.1
3,355 - LRK53_RS00015 0.54 -0.5
3,355 - LRK53_RS00015 0.54 -0.9
3,355 - LRK53_RS00015 0.54 -1.7
3,355 - LRK53_RS00015 0.54 -1.2
3,355 - LRK53_RS00015 0.54 -0.5
3,358 + LRK53_RS00015 0.54 -1.5
3,358 + LRK53_RS00015 0.54 -1.7
3,358 + LRK53_RS00015 0.54 +2.1
3,358 + LRK53_RS00015 0.54 +1.1
3,358 + LRK53_RS00015 0.54 -0.5
3,358 + LRK53_RS00015 0.54 -0.5
3,359 - LRK53_RS00015 0.54 -0.5
3,359 - LRK53_RS00015 0.54 -1.2
3,359 - LRK53_RS00015 0.54 +1.1
3,359 - LRK53_RS00015 0.54 -1.9
3,359 - LRK53_RS00015 0.54 -0.5
3,516 + LRK53_RS00015 0.69 -0.1
3,516 + LRK53_RS00015 0.69 +1.7
3,516 + LRK53_RS00015 0.69 -2.2
3,516 + LRK53_RS00015 0.69 +1.1
3,516 + LRK53_RS00015 0.69 +0.4
3,516 + LRK53_RS00015 0.69 -2.1
3,517 - LRK53_RS00015 0.69 -2.9
3,517 - LRK53_RS00015 0.69 -0.5
3,517 - LRK53_RS00015 0.69 +0.1
3,517 - LRK53_RS00015 0.69 +0.1
3,517 - LRK53_RS00015 0.69 -0.9
3,517 - LRK53_RS00015 0.69 -1.2
3,517 - LRK53_RS00015 0.69 -1.7
3,517 - LRK53_RS00015 0.69 -1.5
3,517 - LRK53_RS00015 0.69 -1.2
3,517 - LRK53_RS00015 0.69 -1.5
3,606 + LRK53_RS00015 0.77 +1.1
3,607 - LRK53_RS00015 0.77 -1.2
3,644 - LRK53_RS00015 0.81 -0.5
3,644 - LRK53_RS00015 0.81 -0.2
3,644 - LRK53_RS00015 0.81 -0.5
3,848 + +0.1
3,848 + -1.9
3,848 + -2.5
3,848 + +1.1
3,849 - +0.1
3,850 + +0.4
3,850 + -0.7
3,850 + +0.1
3,850 + +1.1
3,854 + -1.2
3,854 + -0.7
3,854 + +1.1
3,854 + -0.9
3,854 + -1.5
3,854 + -1.2
3,854 + -0.9
3,854 + -1.5
3,854 + +0.1
3,854 + -1.1
3,854 + -0.5
3,854 + +1.7

Or see this region's nucleotide sequence