Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08725 and LRK53_RS08730 overlap by 8 nucleotides LRK53_RS08730 and LRK53_RS08735 are separated by 260 nucleotides LRK53_RS08735 and LRK53_RS08740 are separated by 26 nucleotides LRK53_RS08740 and LRK53_RS08745 are separated by 71 nucleotides
LRK53_RS08725: LRK53_RS08725 - TonB-dependent receptor, at 1,961,960 to 1,964,194
_RS08725
LRK53_RS08730: LRK53_RS08730 - hypothetical protein, at 1,964,187 to 1,964,531
_RS08730
LRK53_RS08735: LRK53_RS08735 - Xaa-Pro peptidase family protein, at 1,964,792 to 1,965,985
_RS08735
LRK53_RS08740: LRK53_RS08740 - hypothetical protein, at 1,966,012 to 1,966,434
_RS08740
LRK53_RS08745: LRK53_RS08745 - LuxR C-terminal-related transcriptional regulator, at 1,966,506 to 1,969,205
_RS08745
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1964.045 kb on + strand at 1964.045 kb on + strand at 1964.046 kb on - strand at 1964.046 kb on - strand at 1964.046 kb on - strand at 1964.046 kb on - strand at 1964.056 kb on + strand at 1964.056 kb on + strand at 1964.056 kb on + strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.057 kb on - strand at 1964.108 kb on - strand at 1964.186 kb on + strand at 1964.186 kb on + strand at 1964.186 kb on + strand at 1964.187 kb on - strand at 1964.187 kb on - strand at 1964.187 kb on - strand at 1964.187 kb on - strand at 1964.218 kb on + strand at 1964.218 kb on + strand at 1964.219 kb on - strand at 1964.219 kb on - strand at 1964.219 kb on - strand at 1964.219 kb on - strand at 1964.313 kb on - strand, within LRK53_RS08730 at 1964.313 kb on - strand, within LRK53_RS08730 at 1964.313 kb on - strand, within LRK53_RS08730 at 1964.313 kb on - strand, within LRK53_RS08730 at 1964.342 kb on - strand, within LRK53_RS08730 at 1964.618 kb on + strand at 1964.618 kb on + strand at 1964.619 kb on - strand at 1964.619 kb on - strand at 1964.619 kb on - strand at 1964.681 kb on + strand at 1964.682 kb on - strand at 1964.729 kb on + strand at 1964.811 kb on + strand at 1964.811 kb on + strand at 1964.811 kb on + strand at 1964.811 kb on + strand at 1964.812 kb on - strand at 1964.812 kb on - strand at 1964.812 kb on - strand at 1964.812 kb on - strand at 1964.812 kb on - strand at 1964.812 kb on - strand at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.963 kb on + strand, within LRK53_RS08735 at 1964.964 kb on - strand, within LRK53_RS08735 at 1964.964 kb on - strand, within LRK53_RS08735 at 1964.964 kb on - strand, within LRK53_RS08735 at 1964.964 kb on - strand, within LRK53_RS08735 at 1965.035 kb on + strand, within LRK53_RS08735 at 1965.035 kb on + strand, within LRK53_RS08735 at 1965.035 kb on + strand, within LRK53_RS08735 at 1965.035 kb on + strand, within LRK53_RS08735 at 1965.036 kb on - strand, within LRK53_RS08735 at 1965.036 kb on - strand, within LRK53_RS08735 at 1965.036 kb on - strand, within LRK53_RS08735 at 1965.087 kb on + strand, within LRK53_RS08735 at 1965.087 kb on + strand, within LRK53_RS08735 at 1965.087 kb on + strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.088 kb on - strand, within LRK53_RS08735 at 1965.150 kb on + strand, within LRK53_RS08735 at 1965.150 kb on + strand, within LRK53_RS08735 at 1965.150 kb on + strand, within LRK53_RS08735 at 1965.150 kb on + strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.151 kb on - strand, within LRK53_RS08735 at 1965.221 kb on + strand, within LRK53_RS08735 at 1965.221 kb on + strand, within LRK53_RS08735 at 1965.221 kb on + strand, within LRK53_RS08735 at 1965.222 kb on - strand, within LRK53_RS08735 at 1965.373 kb on + strand, within LRK53_RS08735 at 1965.390 kb on + strand, within LRK53_RS08735 at 1965.391 kb on - strand, within LRK53_RS08735 at 1965.557 kb on + strand, within LRK53_RS08735 at 1965.557 kb on + strand, within LRK53_RS08735 at 1965.557 kb on + strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.558 kb on - strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.581 kb on + strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.582 kb on - strand, within LRK53_RS08735 at 1965.807 kb on - strand, within LRK53_RS08735 at 1965.807 kb on - strand, within LRK53_RS08735 at 1965.807 kb on - strand, within LRK53_RS08735 at 1965.914 kb on + strand at 1965.914 kb on + strand at 1965.914 kb on + strand at 1965.914 kb on + strand at 1965.914 kb on + strand at 1965.914 kb on + strand at 1965.915 kb on - strand at 1965.915 kb on - strand at 1965.915 kb on - strand at 1965.915 kb on - strand at 1965.915 kb on - strand at 1966.076 kb on + strand, within LRK53_RS08740 at 1966.076 kb on + strand, within LRK53_RS08740 at 1966.076 kb on + strand, within LRK53_RS08740 at 1966.076 kb on + strand, within LRK53_RS08740 at 1966.076 kb on + strand, within LRK53_RS08740 at 1966.077 kb on - strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.081 kb on + strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.082 kb on - strand, within LRK53_RS08740 at 1966.182 kb on + strand, within LRK53_RS08740 at 1966.182 kb on + strand, within LRK53_RS08740 at 1966.182 kb on + strand, within LRK53_RS08740 at 1966.182 kb on + strand, within LRK53_RS08740 at 1966.183 kb on - strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.218 kb on + strand, within LRK53_RS08740 at 1966.219 kb on - strand, within LRK53_RS08740 at 1966.219 kb on - strand, within LRK53_RS08740 at 1966.219 kb on - strand, within LRK53_RS08740 at 1966.219 kb on - strand, within LRK53_RS08740 at 1966.422 kb on + strand at 1966.423 kb on - strand at 1966.423 kb on - strand at 1966.423 kb on - strand at 1966.438 kb on + strand at 1966.438 kb on + strand at 1966.438 kb on + strand at 1966.438 kb on + strand at 1966.438 kb on + strand at 1966.438 kb on + strand at 1966.463 kb on + strand at 1966.464 kb on - strand at 1966.464 kb on - strand at 1966.464 kb on - strand at 1966.588 kb on + strand at 1966.588 kb on + strand at 1966.588 kb on + strand at 1966.589 kb on - strand at 1966.589 kb on - strand at 1966.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 1,964,045 + -1.5 1,964,045 + -2.1 1,964,046 - -0.1 1,964,046 - -1.5 1,964,046 - -1.7 1,964,046 - -0.4 1,964,056 + -1.1 1,964,056 + -1.7 1,964,056 + -0.1 1,964,057 - -0.6 1,964,057 - +1.5 1,964,057 - +0.3 1,964,057 - -0.1 1,964,057 - -1.4 1,964,057 - -1.2 1,964,057 - -0.9 1,964,108 - -1.5 1,964,186 + -1.5 1,964,186 + -2.3 1,964,186 + -0.7 1,964,187 - -0.7 1,964,187 - -0.1 1,964,187 - -0.7 1,964,187 - -0.4 1,964,218 + -1.0 1,964,218 + +0.2 1,964,219 - -0.6 1,964,219 - -0.7 1,964,219 - +1.2 1,964,219 - +0.0 1,964,313 - LRK53_RS08730 0.37 -0.9 1,964,313 - LRK53_RS08730 0.37 -1.4 1,964,313 - LRK53_RS08730 0.37 -1.1 1,964,313 - LRK53_RS08730 0.37 -0.7 1,964,342 - LRK53_RS08730 0.45 -1.3 1,964,618 + +0.5 1,964,618 + -1.1 1,964,619 - -1.9 1,964,619 - +1.3 1,964,619 - -0.8 1,964,681 + -1.4 1,964,682 - -1.0 1,964,729 + -0.1 1,964,811 + -1.1 1,964,811 + -0.7 1,964,811 + -2.2 1,964,811 + -0.3 1,964,812 - -0.4 1,964,812 - -0.7 1,964,812 - -2.5 1,964,812 - -1.0 1,964,812 - +0.9 1,964,812 - +1.1 1,964,963 + LRK53_RS08735 0.14 -0.4 1,964,963 + LRK53_RS08735 0.14 -1.9 1,964,963 + LRK53_RS08735 0.14 -0.5 1,964,963 + LRK53_RS08735 0.14 -0.1 1,964,963 + LRK53_RS08735 0.14 +0.1 1,964,963 + LRK53_RS08735 0.14 -0.1 1,964,963 + LRK53_RS08735 0.14 +1.5 1,964,964 - LRK53_RS08735 0.14 -1.1 1,964,964 - LRK53_RS08735 0.14 -1.7 1,964,964 - LRK53_RS08735 0.14 +1.9 1,964,964 - LRK53_RS08735 0.14 -0.8 1,965,035 + LRK53_RS08735 0.20 +0.3 1,965,035 + LRK53_RS08735 0.20 -1.1 1,965,035 + LRK53_RS08735 0.20 -0.4 1,965,035 + LRK53_RS08735 0.20 +0.3 1,965,036 - LRK53_RS08735 0.20 +0.3 1,965,036 - LRK53_RS08735 0.20 -2.1 1,965,036 - LRK53_RS08735 0.20 -1.1 1,965,087 + LRK53_RS08735 0.25 +0.3 1,965,087 + LRK53_RS08735 0.25 -0.1 1,965,087 + LRK53_RS08735 0.25 +0.5 1,965,088 - LRK53_RS08735 0.25 -0.8 1,965,088 - LRK53_RS08735 0.25 -1.2 1,965,088 - LRK53_RS08735 0.25 -1.2 1,965,088 - LRK53_RS08735 0.25 -2.4 1,965,088 - LRK53_RS08735 0.25 -0.1 1,965,088 - LRK53_RS08735 0.25 -1.3 1,965,150 + LRK53_RS08735 0.30 -0.9 1,965,150 + LRK53_RS08735 0.30 +0.3 1,965,150 + LRK53_RS08735 0.30 +0.9 1,965,150 + LRK53_RS08735 0.30 -0.3 1,965,151 - LRK53_RS08735 0.30 -0.2 1,965,151 - LRK53_RS08735 0.30 -0.1 1,965,151 - LRK53_RS08735 0.30 -0.5 1,965,151 - LRK53_RS08735 0.30 -0.1 1,965,151 - LRK53_RS08735 0.30 -0.1 1,965,151 - LRK53_RS08735 0.30 -0.1 1,965,151 - LRK53_RS08735 0.30 -0.1 1,965,151 - LRK53_RS08735 0.30 -0.4 1,965,151 - LRK53_RS08735 0.30 -0.8 1,965,151 - LRK53_RS08735 0.30 -0.4 1,965,151 - LRK53_RS08735 0.30 -0.3 1,965,151 - LRK53_RS08735 0.30 -1.1 1,965,221 + LRK53_RS08735 0.36 -0.7 1,965,221 + LRK53_RS08735 0.36 +0.9 1,965,221 + LRK53_RS08735 0.36 -1.4 1,965,222 - LRK53_RS08735 0.36 -0.7 1,965,373 + LRK53_RS08735 0.49 +0.2 1,965,390 + LRK53_RS08735 0.50 -0.1 1,965,391 - LRK53_RS08735 0.50 -2.7 1,965,557 + LRK53_RS08735 0.64 +0.9 1,965,557 + LRK53_RS08735 0.64 -0.5 1,965,557 + LRK53_RS08735 0.64 -1.9 1,965,558 - LRK53_RS08735 0.64 -0.1 1,965,558 - LRK53_RS08735 0.64 -1.5 1,965,558 - LRK53_RS08735 0.64 -0.5 1,965,558 - LRK53_RS08735 0.64 -0.1 1,965,558 - LRK53_RS08735 0.64 -1.5 1,965,558 - LRK53_RS08735 0.64 -0.1 1,965,558 - LRK53_RS08735 0.64 -0.1 1,965,581 + LRK53_RS08735 0.66 +1.2 1,965,581 + LRK53_RS08735 0.66 -0.8 1,965,581 + LRK53_RS08735 0.66 +0.9 1,965,581 + LRK53_RS08735 0.66 -0.4 1,965,581 + LRK53_RS08735 0.66 +0.5 1,965,581 + LRK53_RS08735 0.66 -2.3 1,965,581 + LRK53_RS08735 0.66 -1.9 1,965,581 + LRK53_RS08735 0.66 +0.0 1,965,581 + LRK53_RS08735 0.66 -0.2 1,965,581 + LRK53_RS08735 0.66 -0.3 1,965,581 + LRK53_RS08735 0.66 +0.9 1,965,581 + LRK53_RS08735 0.66 +0.9 1,965,581 + LRK53_RS08735 0.66 -0.6 1,965,581 + LRK53_RS08735 0.66 -0.2 1,965,581 + LRK53_RS08735 0.66 -0.9 1,965,581 + LRK53_RS08735 0.66 -1.1 1,965,581 + LRK53_RS08735 0.66 +0.9 1,965,581 + LRK53_RS08735 0.66 +0.1 1,965,581 + LRK53_RS08735 0.66 +0.9 1,965,582 - LRK53_RS08735 0.66 -0.3 1,965,582 - LRK53_RS08735 0.66 +0.9 1,965,582 - LRK53_RS08735 0.66 +0.7 1,965,582 - LRK53_RS08735 0.66 -0.7 1,965,582 - LRK53_RS08735 0.66 -1.5 1,965,582 - LRK53_RS08735 0.66 -0.4 1,965,582 - LRK53_RS08735 0.66 -0.7 1,965,582 - LRK53_RS08735 0.66 +0.9 1,965,582 - LRK53_RS08735 0.66 -0.4 1,965,582 - LRK53_RS08735 0.66 -0.7 1,965,582 - LRK53_RS08735 0.66 -0.9 1,965,582 - LRK53_RS08735 0.66 -0.3 1,965,582 - LRK53_RS08735 0.66 -0.8 1,965,807 - LRK53_RS08735 0.85 +0.9 1,965,807 - LRK53_RS08735 0.85 -0.2 1,965,807 - LRK53_RS08735 0.85 +0.9 1,965,914 + -0.7 1,965,914 + -0.7 1,965,914 + -0.3 1,965,914 + -1.3 1,965,914 + -0.0 1,965,914 + -0.1 1,965,915 - -0.1 1,965,915 - +0.7 1,965,915 - -0.9 1,965,915 - -1.1 1,965,915 - -0.7 1,966,076 + LRK53_RS08740 0.15 -0.1 1,966,076 + LRK53_RS08740 0.15 +1.7 1,966,076 + LRK53_RS08740 0.15 +0.9 1,966,076 + LRK53_RS08740 0.15 +0.9 1,966,076 + LRK53_RS08740 0.15 +0.9 1,966,077 - LRK53_RS08740 0.15 -1.1 1,966,081 + LRK53_RS08740 0.16 -0.8 1,966,081 + LRK53_RS08740 0.16 -1.3 1,966,081 + LRK53_RS08740 0.16 +0.9 1,966,081 + LRK53_RS08740 0.16 +0.9 1,966,081 + LRK53_RS08740 0.16 +0.3 1,966,081 + LRK53_RS08740 0.16 +1.9 1,966,081 + LRK53_RS08740 0.16 -0.1 1,966,081 + LRK53_RS08740 0.16 -0.9 1,966,081 + LRK53_RS08740 0.16 +0.9 1,966,082 - LRK53_RS08740 0.17 +0.3 1,966,082 - LRK53_RS08740 0.17 +0.9 1,966,082 - LRK53_RS08740 0.17 -1.1 1,966,082 - LRK53_RS08740 0.17 -0.1 1,966,082 - LRK53_RS08740 0.17 -1.2 1,966,082 - LRK53_RS08740 0.17 -0.1 1,966,082 - LRK53_RS08740 0.17 +0.2 1,966,082 - LRK53_RS08740 0.17 -1.4 1,966,082 - LRK53_RS08740 0.17 -0.8 1,966,182 + LRK53_RS08740 0.40 -1.1 1,966,182 + LRK53_RS08740 0.40 -0.1 1,966,182 + LRK53_RS08740 0.40 -2.4 1,966,182 + LRK53_RS08740 0.40 -1.4 1,966,183 - LRK53_RS08740 0.40 +0.9 1,966,218 + LRK53_RS08740 0.49 -1.0 1,966,218 + LRK53_RS08740 0.49 -0.3 1,966,218 + LRK53_RS08740 0.49 -0.7 1,966,218 + LRK53_RS08740 0.49 -2.5 1,966,218 + LRK53_RS08740 0.49 -0.1 1,966,218 + LRK53_RS08740 0.49 -1.4 1,966,218 + LRK53_RS08740 0.49 -1.4 1,966,218 + LRK53_RS08740 0.49 -1.4 1,966,218 + LRK53_RS08740 0.49 +0.7 1,966,218 + LRK53_RS08740 0.49 -1.1 1,966,218 + LRK53_RS08740 0.49 -0.1 1,966,219 - LRK53_RS08740 0.49 -1.3 1,966,219 - LRK53_RS08740 0.49 -0.4 1,966,219 - LRK53_RS08740 0.49 +0.5 1,966,219 - LRK53_RS08740 0.49 -0.6 1,966,422 + -1.1 1,966,423 - +0.7 1,966,423 - +1.9 1,966,423 - -0.9 1,966,438 + -0.9 1,966,438 + -1.1 1,966,438 + -0.7 1,966,438 + -1.3 1,966,438 + -0.7 1,966,438 + -0.5 1,966,463 + -1.1 1,966,464 - -0.1 1,966,464 - -0.8 1,966,464 - -2.5 1,966,588 + -1.7 1,966,588 + -0.0 1,966,588 + +0.9 1,966,589 - -0.5 1,966,589 - -0.9 1,966,589 - +1.5
Or see this region's nucleotide sequence