Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07455

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07445 and LRK53_RS07450 are separated by 45 nucleotidesLRK53_RS07450 and LRK53_RS07455 are separated by 98 nucleotidesLRK53_RS07455 and LRK53_RS07460 are separated by 133 nucleotides LRK53_RS07445: LRK53_RS07445 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,665,571 to 1,666,344 _RS07445 LRK53_RS07450: LRK53_RS07450 - 50S ribosomal protein L19, at 1,666,390 to 1,666,782 _RS07450 LRK53_RS07455: LRK53_RS07455 - GGDEF domain-containing phosphodiesterase, at 1,666,881 to 1,668,923 _RS07455 LRK53_RS07460: LRK53_RS07460 - EF-P beta-lysylation protein EpmB, at 1,669,057 to 1,670,073 _RS07460 Position (kb) 1666 1667 1668 1669Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1666.681 kb on + strand, within LRK53_RS07450at 1666.684 kb on + strand, within LRK53_RS07450at 1666.780 kb on + strandat 1666.780 kb on + strandat 1666.780 kb on + strandat 1666.780 kb on + strandat 1666.781 kb on - strandat 1666.781 kb on - strandat 1666.781 kb on - strandat 1666.781 kb on - strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.071 kb on + strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.072 kb on - strandat 1667.092 kb on + strand, within LRK53_RS07455at 1667.092 kb on + strand, within LRK53_RS07455at 1667.093 kb on - strand, within LRK53_RS07455at 1667.093 kb on - strand, within LRK53_RS07455at 1667.426 kb on + strand, within LRK53_RS07455at 1667.427 kb on - strand, within LRK53_RS07455at 1667.512 kb on + strand, within LRK53_RS07455at 1667.512 kb on + strand, within LRK53_RS07455at 1667.512 kb on + strand, within LRK53_RS07455at 1667.512 kb on + strand, within LRK53_RS07455at 1667.513 kb on - strand, within LRK53_RS07455at 1667.513 kb on - strand, within LRK53_RS07455at 1667.513 kb on - strand, within LRK53_RS07455at 1667.554 kb on + strand, within LRK53_RS07455at 1667.554 kb on + strand, within LRK53_RS07455at 1667.554 kb on + strand, within LRK53_RS07455at 1667.554 kb on + strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.555 kb on - strand, within LRK53_RS07455at 1667.606 kb on - strand, within LRK53_RS07455at 1668.409 kb on + strand, within LRK53_RS07455at 1668.409 kb on + strand, within LRK53_RS07455at 1668.409 kb on + strand, within LRK53_RS07455at 1668.409 kb on + strand, within LRK53_RS07455at 1668.409 kb on + strand, within LRK53_RS07455at 1668.410 kb on - strand, within LRK53_RS07455at 1668.410 kb on - strand, within LRK53_RS07455at 1668.448 kb on + strand, within LRK53_RS07455at 1668.449 kb on - strand, within LRK53_RS07455at 1668.682 kb on + strand, within LRK53_RS07455at 1668.683 kb on - strand, within LRK53_RS07455at 1668.998 kb on + strandat 1669.058 kb on + strandat 1669.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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1,666,681 + LRK53_RS07450 0.74 -1.0
1,666,684 + LRK53_RS07450 0.75 +0.9
1,666,780 + -1.4
1,666,780 + -0.9
1,666,780 + -2.1
1,666,780 + -1.2
1,666,781 - +0.9
1,666,781 - -1.1
1,666,781 - -0.7
1,666,781 - +1.3
1,667,071 + -0.5
1,667,071 + -1.3
1,667,071 + -0.7
1,667,071 + -0.9
1,667,071 + -0.9
1,667,071 + -1.8
1,667,071 + +1.5
1,667,071 + -0.9
1,667,071 + -0.3
1,667,071 + -1.1
1,667,072 - -1.1
1,667,072 - +2.9
1,667,072 - -1.1
1,667,072 - -1.7
1,667,072 - -0.4
1,667,072 - -0.1
1,667,072 - -0.1
1,667,072 - +0.9
1,667,072 - -1.9
1,667,092 + LRK53_RS07455 0.10 -2.6
1,667,092 + LRK53_RS07455 0.10 -1.4
1,667,093 - LRK53_RS07455 0.10 +0.7
1,667,093 - LRK53_RS07455 0.10 -0.6
1,667,426 + LRK53_RS07455 0.27 -0.7
1,667,427 - LRK53_RS07455 0.27 +0.2
1,667,512 + LRK53_RS07455 0.31 -0.7
1,667,512 + LRK53_RS07455 0.31 -0.8
1,667,512 + LRK53_RS07455 0.31 +0.9
1,667,512 + LRK53_RS07455 0.31 -0.7
1,667,513 - LRK53_RS07455 0.31 -1.7
1,667,513 - LRK53_RS07455 0.31 -1.7
1,667,513 - LRK53_RS07455 0.31 -1.4
1,667,554 + LRK53_RS07455 0.33 -0.1
1,667,554 + LRK53_RS07455 0.33 -0.7
1,667,554 + LRK53_RS07455 0.33 -0.1
1,667,554 + LRK53_RS07455 0.33 -1.4
1,667,555 - LRK53_RS07455 0.33 -1.6
1,667,555 - LRK53_RS07455 0.33 +0.9
1,667,555 - LRK53_RS07455 0.33 +0.2
1,667,555 - LRK53_RS07455 0.33 +0.9
1,667,555 - LRK53_RS07455 0.33 +0.3
1,667,555 - LRK53_RS07455 0.33 +0.9
1,667,606 - LRK53_RS07455 0.35 -0.1
1,668,409 + LRK53_RS07455 0.75 -1.4
1,668,409 + LRK53_RS07455 0.75 -0.8
1,668,409 + LRK53_RS07455 0.75 -0.9
1,668,409 + LRK53_RS07455 0.75 -0.7
1,668,409 + LRK53_RS07455 0.75 -1.7
1,668,410 - LRK53_RS07455 0.75 -1.4
1,668,410 - LRK53_RS07455 0.75 -0.7
1,668,448 + LRK53_RS07455 0.77 +0.9
1,668,449 - LRK53_RS07455 0.77 -0.1
1,668,682 + LRK53_RS07455 0.88 -0.7
1,668,683 - LRK53_RS07455 0.88 +1.7
1,668,998 + +0.6
1,669,058 + -0.1
1,669,059 - +1.9

Or see this region's nucleotide sequence