Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07445 and LRK53_RS07450 are separated by 45 nucleotides LRK53_RS07450 and LRK53_RS07455 are separated by 98 nucleotides LRK53_RS07455 and LRK53_RS07460 are separated by 133 nucleotides
LRK53_RS07445: LRK53_RS07445 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,665,571 to 1,666,344
_RS07445
LRK53_RS07450: LRK53_RS07450 - 50S ribosomal protein L19, at 1,666,390 to 1,666,782
_RS07450
LRK53_RS07455: LRK53_RS07455 - GGDEF domain-containing phosphodiesterase, at 1,666,881 to 1,668,923
_RS07455
LRK53_RS07460: LRK53_RS07460 - EF-P beta-lysylation protein EpmB, at 1,669,057 to 1,670,073
_RS07460
Position (kb)
1666
1667
1668
1669 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1666.681 kb on + strand, within LRK53_RS07450 at 1666.684 kb on + strand, within LRK53_RS07450 at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.092 kb on + strand, within LRK53_RS07455 at 1667.092 kb on + strand, within LRK53_RS07455 at 1667.093 kb on - strand, within LRK53_RS07455 at 1667.093 kb on - strand, within LRK53_RS07455 at 1667.426 kb on + strand, within LRK53_RS07455 at 1667.427 kb on - strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.606 kb on - strand, within LRK53_RS07455 at 1668.409 kb on + strand, within LRK53_RS07455 at 1668.409 kb on + strand, within LRK53_RS07455 at 1668.409 kb on + strand, within LRK53_RS07455 at 1668.409 kb on + strand, within LRK53_RS07455 at 1668.409 kb on + strand, within LRK53_RS07455 at 1668.410 kb on - strand, within LRK53_RS07455 at 1668.410 kb on - strand, within LRK53_RS07455 at 1668.448 kb on + strand, within LRK53_RS07455 at 1668.449 kb on - strand, within LRK53_RS07455 at 1668.682 kb on + strand, within LRK53_RS07455 at 1668.683 kb on - strand, within LRK53_RS07455 at 1668.998 kb on + strand at 1669.058 kb on + strand at 1669.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 1,666,681 + LRK53_RS07450 0.74 -1.0 1,666,684 + LRK53_RS07450 0.75 +0.9 1,666,780 + -1.4 1,666,780 + -0.9 1,666,780 + -2.1 1,666,780 + -1.2 1,666,781 - +0.9 1,666,781 - -1.1 1,666,781 - -0.7 1,666,781 - +1.3 1,667,071 + -0.5 1,667,071 + -1.3 1,667,071 + -0.7 1,667,071 + -0.9 1,667,071 + -0.9 1,667,071 + -1.8 1,667,071 + +1.5 1,667,071 + -0.9 1,667,071 + -0.3 1,667,071 + -1.1 1,667,072 - -1.1 1,667,072 - +2.9 1,667,072 - -1.1 1,667,072 - -1.7 1,667,072 - -0.4 1,667,072 - -0.1 1,667,072 - -0.1 1,667,072 - +0.9 1,667,072 - -1.9 1,667,092 + LRK53_RS07455 0.10 -2.6 1,667,092 + LRK53_RS07455 0.10 -1.4 1,667,093 - LRK53_RS07455 0.10 +0.7 1,667,093 - LRK53_RS07455 0.10 -0.6 1,667,426 + LRK53_RS07455 0.27 -0.7 1,667,427 - LRK53_RS07455 0.27 +0.2 1,667,512 + LRK53_RS07455 0.31 -0.7 1,667,512 + LRK53_RS07455 0.31 -0.8 1,667,512 + LRK53_RS07455 0.31 +0.9 1,667,512 + LRK53_RS07455 0.31 -0.7 1,667,513 - LRK53_RS07455 0.31 -1.7 1,667,513 - LRK53_RS07455 0.31 -1.7 1,667,513 - LRK53_RS07455 0.31 -1.4 1,667,554 + LRK53_RS07455 0.33 -0.1 1,667,554 + LRK53_RS07455 0.33 -0.7 1,667,554 + LRK53_RS07455 0.33 -0.1 1,667,554 + LRK53_RS07455 0.33 -1.4 1,667,555 - LRK53_RS07455 0.33 -1.6 1,667,555 - LRK53_RS07455 0.33 +0.9 1,667,555 - LRK53_RS07455 0.33 +0.2 1,667,555 - LRK53_RS07455 0.33 +0.9 1,667,555 - LRK53_RS07455 0.33 +0.3 1,667,555 - LRK53_RS07455 0.33 +0.9 1,667,606 - LRK53_RS07455 0.35 -0.1 1,668,409 + LRK53_RS07455 0.75 -1.4 1,668,409 + LRK53_RS07455 0.75 -0.8 1,668,409 + LRK53_RS07455 0.75 -0.9 1,668,409 + LRK53_RS07455 0.75 -0.7 1,668,409 + LRK53_RS07455 0.75 -1.7 1,668,410 - LRK53_RS07455 0.75 -1.4 1,668,410 - LRK53_RS07455 0.75 -0.7 1,668,448 + LRK53_RS07455 0.77 +0.9 1,668,449 - LRK53_RS07455 0.77 -0.1 1,668,682 + LRK53_RS07455 0.88 -0.7 1,668,683 - LRK53_RS07455 0.88 +1.7 1,668,998 + +0.6 1,669,058 + -0.1 1,669,059 - +1.9
Or see this region's nucleotide sequence