Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26705

Experiment: TP9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP9
5,110,628	+	hisQ	JDDGAC_26695	0.65	+0.6
5,110,757	+	hisQ	JDDGAC_26695	0.83	+0.4
5,110,757	+	hisQ	JDDGAC_26695	0.83	-0.2
5,110,785	-	hisQ	JDDGAC_26695	0.87	-0.1
5,110,880	+				+0.9
5,110,881	-				+0.6
5,110,889	-				-0.3
5,111,023	-	hisM	JDDGAC_26700	0.22	-0.8
5,111,026	+	hisM	JDDGAC_26700	0.22	+0.3
5,111,052	+	hisM	JDDGAC_26700	0.26	+0.5
5,111,053	-	hisM	JDDGAC_26700	0.26	-0.4
5,111,053	-	hisM	JDDGAC_26700	0.26	+1.0
5,111,113	+	hisM	JDDGAC_26700	0.34	-0.6
5,111,113	+	hisM	JDDGAC_26700	0.34	+0.3
5,111,114	-	hisM	JDDGAC_26700	0.34	+1.0
5,111,114	-	hisM	JDDGAC_26700	0.34	-0.5
5,111,114	-	hisM	JDDGAC_26700	0.34	+1.5
5,111,337	+	hisM	JDDGAC_26700	0.66	+0.9
5,111,353	+	hisM	JDDGAC_26700	0.68	+0.1
5,111,385	+	hisM	JDDGAC_26700	0.72	+0.3
5,111,430	-	hisM	JDDGAC_26700	0.79	+1.0
5,111,443	-	hisM	JDDGAC_26700	0.80	+0.7
5,111,455	+	hisM	JDDGAC_26700	0.82	+0.9
5,111,456	-	hisM	JDDGAC_26700	0.82	+0.3
5,111,499	-	hisM	JDDGAC_26700	0.88	+2.1
5,111,499	-	hisM	JDDGAC_26700	0.88	+0.2
5,111,509	+	hisM	JDDGAC_26700	0.90	-0.5
5,111,509	+	hisM	JDDGAC_26700	0.90	+0.7
5,111,510	-	hisM	JDDGAC_26700	0.90	+1.1
5,111,587	+				-1.4
5,111,588	-				+0.5
5,111,607	+				+0.1
5,111,688	+	hisP	JDDGAC_26705	0.13	-0.7
5,111,688	+	hisP	JDDGAC_26705	0.13	+0.1
5,111,688	+	hisP	JDDGAC_26705	0.13	-0.7
5,111,688	+	hisP	JDDGAC_26705	0.13	+0.3
5,111,692	-	hisP	JDDGAC_26705	0.13	-0.6
5,111,744	-	hisP	JDDGAC_26705	0.20	+0.1
5,111,857	-	hisP	JDDGAC_26705	0.34	+0.7
5,111,993	+	hisP	JDDGAC_26705	0.52	-2.2
5,112,243	+	hisP	JDDGAC_26705	0.84	-0.3
5,112,243	+	hisP	JDDGAC_26705	0.84	-2.7
5,112,244	-	hisP	JDDGAC_26705	0.84	-0.1
5,112,244	-	hisP	JDDGAC_26705	0.84	-0.0
5,112,244	-	hisP	JDDGAC_26705	0.84	+0.1
5,112,279	+	hisP	JDDGAC_26705	0.89	-1.2
5,112,279	+	hisP	JDDGAC_26705	0.89	-2.5
5,112,436	+				-0.2
5,112,459	+				-1.1
5,112,599	-				-0.5
5,112,602	+				-2.4
5,112,696	-		JDDGAC_26710	0.22	-2.1
5,112,786	+		JDDGAC_26710	0.36	-0.9
5,112,796	+		JDDGAC_26710	0.38	-0.0
5,112,892	-		JDDGAC_26710	0.53	+0.1
5,113,008	+		JDDGAC_26710	0.72	-0.4
5,113,035	-		JDDGAC_26710	0.76	-0.7
5,113,062	-		JDDGAC_26710	0.80	-1.2
5,113,182	+				-1.8
5,113,183	-				-0.2
5,113,186	+				+1.0
5,113,200	-				-0.0
5,113,203	+				+0.4
5,113,204	-				-0.9
5,113,207	+				-0.3
5,113,207	+				+1.1
5,113,255	+				-0.9
5,113,355	+	rpnB	JDDGAC_26715	0.40	-1.4