Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14400 and LRK53_RS14405 are separated by 52 nucleotides LRK53_RS14405 and LRK53_RS14410 are separated by 72 nucleotides LRK53_RS14410 and LRK53_RS14415 are separated by 1 nucleotides
LRK53_RS14400: LRK53_RS14400 - TetR family transcriptional regulator, at 3,155,925 to 3,156,533
_RS14400
LRK53_RS14405: LRK53_RS14405 - hypothetical protein, at 3,156,586 to 3,157,005
_RS14405
LRK53_RS14410: LRK53_RS14410 - secretion protein HlyD, at 3,157,078 to 3,158,070
_RS14410
LRK53_RS14415: LRK53_RS14415 - ATP-binding cassette domain-containing protein, at 3,158,072 to 3,159,841
_RS14415
Position (kb)
3157
3158
3159 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3156.212 kb on + strand, within LRK53_RS14400 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.721 kb on + strand, within LRK53_RS14405 at 3156.722 kb on - strand, within LRK53_RS14405 at 3156.722 kb on - strand, within LRK53_RS14405 at 3156.766 kb on + strand, within LRK53_RS14405 at 3156.766 kb on + strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3156.767 kb on - strand, within LRK53_RS14405 at 3157.165 kb on + strand at 3157.166 kb on - strand at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.753 kb on + strand, within LRK53_RS14410 at 3157.754 kb on - strand, within LRK53_RS14410 at 3157.754 kb on - strand, within LRK53_RS14410 at 3157.754 kb on - strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.780 kb on + strand, within LRK53_RS14410 at 3157.781 kb on - strand, within LRK53_RS14410 at 3157.781 kb on - strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.792 kb on + strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.793 kb on - strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.838 kb on + strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.839 kb on - strand, within LRK53_RS14410 at 3157.849 kb on - strand, within LRK53_RS14410 at 3157.870 kb on + strand, within LRK53_RS14410 at 3157.870 kb on + strand, within LRK53_RS14410 at 3157.870 kb on + strand, within LRK53_RS14410 at 3157.871 kb on - strand, within LRK53_RS14410 at 3157.871 kb on - strand, within LRK53_RS14410 at 3157.871 kb on - strand, within LRK53_RS14410 at 3157.957 kb on + strand, within LRK53_RS14410 at 3158.354 kb on + strand, within LRK53_RS14415 at 3158.354 kb on + strand, within LRK53_RS14415 at 3158.354 kb on + strand, within LRK53_RS14415 at 3158.354 kb on + strand, within LRK53_RS14415 at 3158.354 kb on + strand, within LRK53_RS14415 at 3158.355 kb on - strand, within LRK53_RS14415 at 3158.355 kb on - strand, within LRK53_RS14415 at 3158.355 kb on - strand, within LRK53_RS14415 at 3158.378 kb on + strand, within LRK53_RS14415 at 3158.378 kb on + strand, within LRK53_RS14415 at 3158.379 kb on - strand, within LRK53_RS14415 at 3158.379 kb on - strand, within LRK53_RS14415 at 3158.414 kb on + strand, within LRK53_RS14415 at 3158.414 kb on + strand, within LRK53_RS14415 at 3158.414 kb on + strand, within LRK53_RS14415 at 3158.414 kb on + strand, within LRK53_RS14415 at 3158.415 kb on - strand, within LRK53_RS14415 at 3158.859 kb on + strand, within LRK53_RS14415
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 3,156,212 + LRK53_RS14400 0.47 -1.0 3,156,721 + LRK53_RS14405 0.32 -0.9 3,156,721 + LRK53_RS14405 0.32 -0.9 3,156,721 + LRK53_RS14405 0.32 -0.5 3,156,721 + LRK53_RS14405 0.32 -0.5 3,156,722 - LRK53_RS14405 0.32 +0.5 3,156,722 - LRK53_RS14405 0.32 +0.1 3,156,766 + LRK53_RS14405 0.43 -0.0 3,156,766 + LRK53_RS14405 0.43 -2.2 3,156,767 - LRK53_RS14405 0.43 +0.1 3,156,767 - LRK53_RS14405 0.43 +0.5 3,156,767 - LRK53_RS14405 0.43 -0.9 3,157,165 + -0.4 3,157,166 - -0.1 3,157,753 + LRK53_RS14410 0.68 -1.9 3,157,753 + LRK53_RS14410 0.68 +0.5 3,157,753 + LRK53_RS14410 0.68 -0.0 3,157,753 + LRK53_RS14410 0.68 -0.9 3,157,753 + LRK53_RS14410 0.68 -1.2 3,157,753 + LRK53_RS14410 0.68 -1.9 3,157,753 + LRK53_RS14410 0.68 -0.9 3,157,754 - LRK53_RS14410 0.68 +1.1 3,157,754 - LRK53_RS14410 0.68 -1.1 3,157,754 - LRK53_RS14410 0.68 +0.1 3,157,780 + LRK53_RS14410 0.71 -0.5 3,157,780 + LRK53_RS14410 0.71 -2.1 3,157,780 + LRK53_RS14410 0.71 +1.1 3,157,780 + LRK53_RS14410 0.71 +0.7 3,157,780 + LRK53_RS14410 0.71 +1.1 3,157,780 + LRK53_RS14410 0.71 +0.1 3,157,780 + LRK53_RS14410 0.71 +0.2 3,157,780 + LRK53_RS14410 0.71 +0.1 3,157,780 + LRK53_RS14410 0.71 +2.1 3,157,780 + LRK53_RS14410 0.71 -1.9 3,157,781 - LRK53_RS14410 0.71 -1.7 3,157,781 - LRK53_RS14410 0.71 -0.5 3,157,792 + LRK53_RS14410 0.72 +0.3 3,157,792 + LRK53_RS14410 0.72 +0.1 3,157,792 + LRK53_RS14410 0.72 +1.1 3,157,792 + LRK53_RS14410 0.72 +0.1 3,157,792 + LRK53_RS14410 0.72 -1.2 3,157,792 + LRK53_RS14410 0.72 -0.5 3,157,792 + LRK53_RS14410 0.72 -2.1 3,157,792 + LRK53_RS14410 0.72 +0.1 3,157,792 + LRK53_RS14410 0.72 -0.5 3,157,792 + LRK53_RS14410 0.72 -0.7 3,157,792 + LRK53_RS14410 0.72 -1.9 3,157,792 + LRK53_RS14410 0.72 -2.3 3,157,792 + LRK53_RS14410 0.72 +0.5 3,157,793 - LRK53_RS14410 0.72 +0.1 3,157,793 - LRK53_RS14410 0.72 -0.5 3,157,793 - LRK53_RS14410 0.72 +0.9 3,157,793 - LRK53_RS14410 0.72 -1.9 3,157,793 - LRK53_RS14410 0.72 -0.3 3,157,793 - LRK53_RS14410 0.72 -1.9 3,157,793 - LRK53_RS14410 0.72 +1.1 3,157,838 + LRK53_RS14410 0.77 -1.2 3,157,838 + LRK53_RS14410 0.77 +2.1 3,157,838 + LRK53_RS14410 0.77 -1.5 3,157,838 + LRK53_RS14410 0.77 +0.1 3,157,838 + LRK53_RS14410 0.77 +0.5 3,157,838 + LRK53_RS14410 0.77 +1.1 3,157,838 + LRK53_RS14410 0.77 -1.2 3,157,838 + LRK53_RS14410 0.77 -1.5 3,157,839 - LRK53_RS14410 0.77 +0.1 3,157,839 - LRK53_RS14410 0.77 -2.5 3,157,839 - LRK53_RS14410 0.77 -0.9 3,157,839 - LRK53_RS14410 0.77 +0.1 3,157,839 - LRK53_RS14410 0.77 -1.2 3,157,839 - LRK53_RS14410 0.77 -0.5 3,157,839 - LRK53_RS14410 0.77 -0.5 3,157,839 - LRK53_RS14410 0.77 +1.5 3,157,839 - LRK53_RS14410 0.77 +0.1 3,157,849 - LRK53_RS14410 0.78 +0.3 3,157,870 + LRK53_RS14410 0.80 -1.7 3,157,870 + LRK53_RS14410 0.80 -0.2 3,157,870 + LRK53_RS14410 0.80 -0.8 3,157,871 - LRK53_RS14410 0.80 +1.1 3,157,871 - LRK53_RS14410 0.80 -0.3 3,157,871 - LRK53_RS14410 0.80 +1.1 3,157,957 + LRK53_RS14410 0.89 +0.1 3,158,354 + LRK53_RS14415 0.16 -0.4 3,158,354 + LRK53_RS14415 0.16 -1.1 3,158,354 + LRK53_RS14415 0.16 +0.5 3,158,354 + LRK53_RS14415 0.16 -1.5 3,158,354 + LRK53_RS14415 0.16 +1.1 3,158,355 - LRK53_RS14415 0.16 +0.1 3,158,355 - LRK53_RS14415 0.16 -0.5 3,158,355 - LRK53_RS14415 0.16 -0.2 3,158,378 + LRK53_RS14415 0.17 +1.1 3,158,378 + LRK53_RS14415 0.17 -0.9 3,158,379 - LRK53_RS14415 0.17 -0.3 3,158,379 - LRK53_RS14415 0.17 +1.1 3,158,414 + LRK53_RS14415 0.19 -1.2 3,158,414 + LRK53_RS14415 0.19 +0.4 3,158,414 + LRK53_RS14415 0.19 -0.5 3,158,414 + LRK53_RS14415 0.19 -0.4 3,158,415 - LRK53_RS14415 0.19 +0.1 3,158,859 + LRK53_RS14415 0.44 +0.7
Or see this region's nucleotide sequence