Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05700 and LRK53_RS05705 are separated by 100 nucleotides LRK53_RS05705 and LRK53_RS05710 are separated by 32 nucleotides LRK53_RS05710 and LRK53_RS05715 overlap by 4 nucleotides
LRK53_RS05700: LRK53_RS05700 - hypothetical protein, at 1,322,708 to 1,324,492
_RS05700
LRK53_RS05705: LRK53_RS05705 - aspartate carbamoyltransferase catalytic subunit, at 1,324,593 to 1,325,519
_RS05705
LRK53_RS05710: LRK53_RS05710 - Holliday junction resolvase RuvX, at 1,325,552 to 1,326,001
_RS05710
LRK53_RS05715: LRK53_RS05715 - YqgE/AlgH family protein, at 1,325,998 to 1,326,567
_RS05715
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1323.609 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.005 kb on + strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.006 kb on - strand, within LRK53_RS05700 at 1324.056 kb on + strand, within LRK53_RS05700 at 1324.143 kb on + strand, within LRK53_RS05700 at 1324.143 kb on + strand, within LRK53_RS05700 at 1324.143 kb on + strand, within LRK53_RS05700 at 1324.143 kb on + strand, within LRK53_RS05700 at 1324.143 kb on + strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.144 kb on - strand, within LRK53_RS05700 at 1324.155 kb on + strand, within LRK53_RS05700 at 1324.155 kb on + strand, within LRK53_RS05700 at 1324.155 kb on + strand, within LRK53_RS05700 at 1324.155 kb on + strand, within LRK53_RS05700 at 1324.155 kb on + strand, within LRK53_RS05700 at 1324.156 kb on - strand, within LRK53_RS05700 at 1324.156 kb on - strand, within LRK53_RS05700 at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.380 kb on + strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.381 kb on - strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.473 kb on + strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.474 kb on - strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.529 kb on + strand at 1324.530 kb on - strand at 1324.530 kb on - strand at 1324.530 kb on - strand at 1324.530 kb on - strand at 1324.530 kb on - strand at 1326.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 1,323,609 + LRK53_RS05700 0.50 -0.1 1,324,005 + LRK53_RS05700 0.73 -2.2 1,324,005 + LRK53_RS05700 0.73 -2.8 1,324,005 + LRK53_RS05700 0.73 -0.4 1,324,005 + LRK53_RS05700 0.73 -1.3 1,324,005 + LRK53_RS05700 0.73 -0.8 1,324,005 + LRK53_RS05700 0.73 -1.4 1,324,005 + LRK53_RS05700 0.73 -0.9 1,324,005 + LRK53_RS05700 0.73 -0.8 1,324,005 + LRK53_RS05700 0.73 -1.1 1,324,005 + LRK53_RS05700 0.73 -2.5 1,324,006 - LRK53_RS05700 0.73 -0.5 1,324,006 - LRK53_RS05700 0.73 -1.5 1,324,006 - LRK53_RS05700 0.73 -1.6 1,324,006 - LRK53_RS05700 0.73 -0.4 1,324,006 - LRK53_RS05700 0.73 +0.9 1,324,006 - LRK53_RS05700 0.73 -1.1 1,324,006 - LRK53_RS05700 0.73 -0.4 1,324,006 - LRK53_RS05700 0.73 -0.5 1,324,006 - LRK53_RS05700 0.73 -0.3 1,324,006 - LRK53_RS05700 0.73 -0.1 1,324,056 + LRK53_RS05700 0.76 -1.1 1,324,143 + LRK53_RS05700 0.80 -1.1 1,324,143 + LRK53_RS05700 0.80 -1.1 1,324,143 + LRK53_RS05700 0.80 -0.4 1,324,143 + LRK53_RS05700 0.80 -1.0 1,324,143 + LRK53_RS05700 0.80 -1.1 1,324,144 - LRK53_RS05700 0.80 -0.8 1,324,144 - LRK53_RS05700 0.80 -0.1 1,324,144 - LRK53_RS05700 0.80 +0.9 1,324,144 - LRK53_RS05700 0.80 +1.9 1,324,144 - LRK53_RS05700 0.80 -0.1 1,324,144 - LRK53_RS05700 0.80 -0.2 1,324,144 - LRK53_RS05700 0.80 -0.6 1,324,144 - LRK53_RS05700 0.80 -1.9 1,324,144 - LRK53_RS05700 0.80 -0.3 1,324,155 + LRK53_RS05700 0.81 -0.1 1,324,155 + LRK53_RS05700 0.81 +1.3 1,324,155 + LRK53_RS05700 0.81 -1.1 1,324,155 + LRK53_RS05700 0.81 -1.9 1,324,155 + LRK53_RS05700 0.81 +0.6 1,324,156 - LRK53_RS05700 0.81 +1.4 1,324,156 - LRK53_RS05700 0.81 +0.2 1,324,380 + -0.1 1,324,380 + -0.1 1,324,380 + -0.4 1,324,380 + -0.9 1,324,380 + -1.4 1,324,380 + +0.9 1,324,380 + +0.9 1,324,380 + -0.6 1,324,380 + -0.4 1,324,380 + -1.1 1,324,380 + -3.4 1,324,380 + -0.9 1,324,380 + -0.4 1,324,380 + -1.3 1,324,380 + -0.5 1,324,381 - -0.9 1,324,381 - +0.9 1,324,381 - -0.9 1,324,381 - -1.1 1,324,381 - -2.2 1,324,381 - -0.1 1,324,381 - -1.1 1,324,381 - +0.0 1,324,381 - -0.7 1,324,381 - -0.6 1,324,381 - -0.8 1,324,381 - -0.5 1,324,381 - -0.3 1,324,381 - +0.1 1,324,381 - -0.6 1,324,381 - -0.8 1,324,381 - -1.1 1,324,381 - -1.1 1,324,473 + -1.1 1,324,473 + -0.1 1,324,473 + -0.6 1,324,473 + -1.5 1,324,473 + -2.1 1,324,473 + -0.3 1,324,473 + -0.2 1,324,473 + -0.6 1,324,474 - -1.1 1,324,474 - -1.0 1,324,474 - -1.3 1,324,474 - -1.0 1,324,474 - -0.1 1,324,474 - -0.1 1,324,474 - +0.4 1,324,474 - -1.2 1,324,474 - -2.0 1,324,529 + +0.9 1,324,529 + +0.9 1,324,529 + +1.4 1,324,529 + -0.6 1,324,529 + -0.6 1,324,529 + -0.2 1,324,529 + -0.1 1,324,529 + -1.4 1,324,529 + -0.2 1,324,529 + -1.3 1,324,529 + +0.4 1,324,530 - -0.8 1,324,530 - -1.3 1,324,530 - -0.2 1,324,530 - -0.6 1,324,530 - +2.3 1,326,014 + -1.1
Or see this region's nucleotide sequence