Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05705

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05700 and LRK53_RS05705 are separated by 100 nucleotidesLRK53_RS05705 and LRK53_RS05710 are separated by 32 nucleotidesLRK53_RS05710 and LRK53_RS05715 overlap by 4 nucleotides LRK53_RS05700: LRK53_RS05700 - hypothetical protein, at 1,322,708 to 1,324,492 _RS05700 LRK53_RS05705: LRK53_RS05705 - aspartate carbamoyltransferase catalytic subunit, at 1,324,593 to 1,325,519 _RS05705 LRK53_RS05710: LRK53_RS05710 - Holliday junction resolvase RuvX, at 1,325,552 to 1,326,001 _RS05710 LRK53_RS05715: LRK53_RS05715 - YqgE/AlgH family protein, at 1,325,998 to 1,326,567 _RS05715 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1323.609 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.005 kb on + strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.006 kb on - strand, within LRK53_RS05700at 1324.056 kb on + strand, within LRK53_RS05700at 1324.143 kb on + strand, within LRK53_RS05700at 1324.143 kb on + strand, within LRK53_RS05700at 1324.143 kb on + strand, within LRK53_RS05700at 1324.143 kb on + strand, within LRK53_RS05700at 1324.143 kb on + strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.144 kb on - strand, within LRK53_RS05700at 1324.155 kb on + strand, within LRK53_RS05700at 1324.155 kb on + strand, within LRK53_RS05700at 1324.155 kb on + strand, within LRK53_RS05700at 1324.155 kb on + strand, within LRK53_RS05700at 1324.155 kb on + strand, within LRK53_RS05700at 1324.156 kb on - strand, within LRK53_RS05700at 1324.156 kb on - strand, within LRK53_RS05700at 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.380 kb on + strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.381 kb on - strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.473 kb on + strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.474 kb on - strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.529 kb on + strandat 1324.530 kb on - strandat 1324.530 kb on - strandat 1324.530 kb on - strandat 1324.530 kb on - strandat 1324.530 kb on - strandat 1326.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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1,323,609 + LRK53_RS05700 0.50 -0.1
1,324,005 + LRK53_RS05700 0.73 -2.2
1,324,005 + LRK53_RS05700 0.73 -2.8
1,324,005 + LRK53_RS05700 0.73 -0.4
1,324,005 + LRK53_RS05700 0.73 -1.3
1,324,005 + LRK53_RS05700 0.73 -0.8
1,324,005 + LRK53_RS05700 0.73 -1.4
1,324,005 + LRK53_RS05700 0.73 -0.9
1,324,005 + LRK53_RS05700 0.73 -0.8
1,324,005 + LRK53_RS05700 0.73 -1.1
1,324,005 + LRK53_RS05700 0.73 -2.5
1,324,006 - LRK53_RS05700 0.73 -0.5
1,324,006 - LRK53_RS05700 0.73 -1.5
1,324,006 - LRK53_RS05700 0.73 -1.6
1,324,006 - LRK53_RS05700 0.73 -0.4
1,324,006 - LRK53_RS05700 0.73 +0.9
1,324,006 - LRK53_RS05700 0.73 -1.1
1,324,006 - LRK53_RS05700 0.73 -0.4
1,324,006 - LRK53_RS05700 0.73 -0.5
1,324,006 - LRK53_RS05700 0.73 -0.3
1,324,006 - LRK53_RS05700 0.73 -0.1
1,324,056 + LRK53_RS05700 0.76 -1.1
1,324,143 + LRK53_RS05700 0.80 -1.1
1,324,143 + LRK53_RS05700 0.80 -1.1
1,324,143 + LRK53_RS05700 0.80 -0.4
1,324,143 + LRK53_RS05700 0.80 -1.0
1,324,143 + LRK53_RS05700 0.80 -1.1
1,324,144 - LRK53_RS05700 0.80 -0.8
1,324,144 - LRK53_RS05700 0.80 -0.1
1,324,144 - LRK53_RS05700 0.80 +0.9
1,324,144 - LRK53_RS05700 0.80 +1.9
1,324,144 - LRK53_RS05700 0.80 -0.1
1,324,144 - LRK53_RS05700 0.80 -0.2
1,324,144 - LRK53_RS05700 0.80 -0.6
1,324,144 - LRK53_RS05700 0.80 -1.9
1,324,144 - LRK53_RS05700 0.80 -0.3
1,324,155 + LRK53_RS05700 0.81 -0.1
1,324,155 + LRK53_RS05700 0.81 +1.3
1,324,155 + LRK53_RS05700 0.81 -1.1
1,324,155 + LRK53_RS05700 0.81 -1.9
1,324,155 + LRK53_RS05700 0.81 +0.6
1,324,156 - LRK53_RS05700 0.81 +1.4
1,324,156 - LRK53_RS05700 0.81 +0.2
1,324,380 + -0.1
1,324,380 + -0.1
1,324,380 + -0.4
1,324,380 + -0.9
1,324,380 + -1.4
1,324,380 + +0.9
1,324,380 + +0.9
1,324,380 + -0.6
1,324,380 + -0.4
1,324,380 + -1.1
1,324,380 + -3.4
1,324,380 + -0.9
1,324,380 + -0.4
1,324,380 + -1.3
1,324,380 + -0.5
1,324,381 - -0.9
1,324,381 - +0.9
1,324,381 - -0.9
1,324,381 - -1.1
1,324,381 - -2.2
1,324,381 - -0.1
1,324,381 - -1.1
1,324,381 - +0.0
1,324,381 - -0.7
1,324,381 - -0.6
1,324,381 - -0.8
1,324,381 - -0.5
1,324,381 - -0.3
1,324,381 - +0.1
1,324,381 - -0.6
1,324,381 - -0.8
1,324,381 - -1.1
1,324,381 - -1.1
1,324,473 + -1.1
1,324,473 + -0.1
1,324,473 + -0.6
1,324,473 + -1.5
1,324,473 + -2.1
1,324,473 + -0.3
1,324,473 + -0.2
1,324,473 + -0.6
1,324,474 - -1.1
1,324,474 - -1.0
1,324,474 - -1.3
1,324,474 - -1.0
1,324,474 - -0.1
1,324,474 - -0.1
1,324,474 - +0.4
1,324,474 - -1.2
1,324,474 - -2.0
1,324,529 + +0.9
1,324,529 + +0.9
1,324,529 + +1.4
1,324,529 + -0.6
1,324,529 + -0.6
1,324,529 + -0.2
1,324,529 + -0.1
1,324,529 + -1.4
1,324,529 + -0.2
1,324,529 + -1.3
1,324,529 + +0.4
1,324,530 - -0.8
1,324,530 - -1.3
1,324,530 - -0.2
1,324,530 - -0.6
1,324,530 - +2.3
1,326,014 + -1.1

Or see this region's nucleotide sequence