Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03975

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03960 and LRK53_RS03965 overlap by 1 nucleotidesLRK53_RS03965 and LRK53_RS03970 are separated by 70 nucleotidesLRK53_RS03970 and LRK53_RS03975 overlap by 49 nucleotidesLRK53_RS03975 and LRK53_RS03980 are separated by 107 nucleotides LRK53_RS03960: LRK53_RS03960 - hypothetical protein, at 927,524 to 927,781 _RS03960 LRK53_RS03965: LRK53_RS03965 - hypothetical protein, at 927,781 to 928,098 _RS03965 LRK53_RS03970: LRK53_RS03970 - hypothetical protein, at 928,169 to 928,450 _RS03970 LRK53_RS03975: LRK53_RS03975 - DUF3667 domain-containing protein, at 928,402 to 928,692 _RS03975 LRK53_RS03980: LRK53_RS03980 - MATE family efflux transporter, at 928,800 to 930,185 _RS03980 Position (kb) 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 927.446 kb on - strandat 927.765 kb on + strandat 927.765 kb on + strandat 927.765 kb on + strandat 927.766 kb on - strandat 927.766 kb on - strandat 927.766 kb on - strandat 927.766 kb on - strandat 927.766 kb on - strandat 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.890 kb on + strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.891 kb on - strand, within LRK53_RS03965at 927.914 kb on + strand, within LRK53_RS03965at 927.914 kb on + strand, within LRK53_RS03965at 927.914 kb on + strand, within LRK53_RS03965at 927.915 kb on - strand, within LRK53_RS03965at 927.915 kb on - strand, within LRK53_RS03965at 927.915 kb on - strand, within LRK53_RS03965at 928.016 kb on + strand, within LRK53_RS03965at 928.016 kb on + strand, within LRK53_RS03965at 928.016 kb on + strand, within LRK53_RS03965at 928.234 kb on + strand, within LRK53_RS03970at 928.234 kb on + strand, within LRK53_RS03970at 928.234 kb on + strand, within LRK53_RS03970at 928.234 kb on + strand, within LRK53_RS03970at 928.234 kb on + strand, within LRK53_RS03970at 928.235 kb on - strand, within LRK53_RS03970at 928.235 kb on - strand, within LRK53_RS03970at 928.235 kb on - strand, within LRK53_RS03970at 928.235 kb on - strand, within LRK53_RS03970at 928.235 kb on - strand, within LRK53_RS03970at 928.448 kb on + strandat 928.448 kb on + strandat 928.449 kb on - strandat 928.449 kb on - strandat 928.449 kb on - strandat 928.449 kb on - strandat 928.449 kb on - strandat 928.472 kb on + strand, within LRK53_RS03975at 928.472 kb on + strand, within LRK53_RS03975at 928.472 kb on + strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.473 kb on - strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.564 kb on + strand, within LRK53_RS03975at 928.565 kb on - strand, within LRK53_RS03975at 928.565 kb on - strand, within LRK53_RS03975at 928.768 kb on + strandat 928.768 kb on + strandat 928.769 kb on - strandat 928.769 kb on - strandat 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.197 kb on + strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.198 kb on - strand, within LRK53_RS03980at 929.247 kb on + strand, within LRK53_RS03980at 929.247 kb on + strand, within LRK53_RS03980at 929.248 kb on - strand, within LRK53_RS03980at 929.301 kb on + strand, within LRK53_RS03980at 929.301 kb on + strand, within LRK53_RS03980at 929.301 kb on + strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.302 kb on - strand, within LRK53_RS03980at 929.343 kb on + strand, within LRK53_RS03980at 929.344 kb on - strand, within LRK53_RS03980at 929.344 kb on - strand, within LRK53_RS03980at 929.344 kb on - strand, within LRK53_RS03980at 929.448 kb on + strand, within LRK53_RS03980at 929.448 kb on + strand, within LRK53_RS03980at 929.449 kb on - strand, within LRK53_RS03980at 929.469 kb on + strand, within LRK53_RS03980at 929.469 kb on + strand, within LRK53_RS03980at 929.469 kb on + strand, within LRK53_RS03980at 929.469 kb on + strand, within LRK53_RS03980at 929.470 kb on - strand, within LRK53_RS03980

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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927,446 - -0.0
927,765 + +1.0
927,765 + -2.0
927,765 + -1.6
927,766 - +1.0
927,766 - +0.4
927,766 - -0.2
927,766 - +0.1
927,766 - -0.6
927,890 + LRK53_RS03965 0.34 +1.0
927,890 + LRK53_RS03965 0.34 -2.2
927,890 + LRK53_RS03965 0.34 -1.3
927,890 + LRK53_RS03965 0.34 -1.8
927,890 + LRK53_RS03965 0.34 -0.4
927,890 + LRK53_RS03965 0.34 -2.5
927,890 + LRK53_RS03965 0.34 -1.2
927,890 + LRK53_RS03965 0.34 -0.4
927,890 + LRK53_RS03965 0.34 -0.3
927,890 + LRK53_RS03965 0.34 +1.4
927,890 + LRK53_RS03965 0.34 -0.4
927,890 + LRK53_RS03965 0.34 -1.6
927,891 - LRK53_RS03965 0.35 -1.3
927,891 - LRK53_RS03965 0.35 +0.4
927,891 - LRK53_RS03965 0.35 +1.0
927,891 - LRK53_RS03965 0.35 -0.6
927,891 - LRK53_RS03965 0.35 +0.3
927,891 - LRK53_RS03965 0.35 +1.0
927,891 - LRK53_RS03965 0.35 -1.0
927,891 - LRK53_RS03965 0.35 -0.0
927,891 - LRK53_RS03965 0.35 +0.3
927,891 - LRK53_RS03965 0.35 -0.0
927,891 - LRK53_RS03965 0.35 +1.0
927,891 - LRK53_RS03965 0.35 -1.4
927,891 - LRK53_RS03965 0.35 -0.0
927,891 - LRK53_RS03965 0.35 +1.0
927,891 - LRK53_RS03965 0.35 +0.5
927,891 - LRK53_RS03965 0.35 +0.4
927,891 - LRK53_RS03965 0.35 -0.0
927,914 + LRK53_RS03965 0.42 +0.3
927,914 + LRK53_RS03965 0.42 -0.0
927,914 + LRK53_RS03965 0.42 -0.2
927,915 - LRK53_RS03965 0.42 -1.3
927,915 - LRK53_RS03965 0.42 +0.4
927,915 - LRK53_RS03965 0.42 +1.0
928,016 + LRK53_RS03965 0.74 -1.0
928,016 + LRK53_RS03965 0.74 +0.8
928,016 + LRK53_RS03965 0.74 -0.6
928,234 + LRK53_RS03970 0.23 -0.6
928,234 + LRK53_RS03970 0.23 -2.0
928,234 + LRK53_RS03970 0.23 -1.3
928,234 + LRK53_RS03970 0.23 +1.0
928,234 + LRK53_RS03970 0.23 +2.6
928,235 - LRK53_RS03970 0.23 -0.0
928,235 - LRK53_RS03970 0.23 +0.1
928,235 - LRK53_RS03970 0.23 +1.0
928,235 - LRK53_RS03970 0.23 -2.2
928,235 - LRK53_RS03970 0.23 +0.1
928,448 + -0.6
928,448 + +0.4
928,449 - -2.6
928,449 - +0.4
928,449 - +1.0
928,449 - -0.3
928,449 - -0.0
928,472 + LRK53_RS03975 0.24 -0.5
928,472 + LRK53_RS03975 0.24 -0.5
928,472 + LRK53_RS03975 0.24 +1.0
928,473 - LRK53_RS03975 0.24 -0.7
928,473 - LRK53_RS03975 0.24 -0.6
928,473 - LRK53_RS03975 0.24 -0.2
928,473 - LRK53_RS03975 0.24 -0.8
928,473 - LRK53_RS03975 0.24 +0.7
928,473 - LRK53_RS03975 0.24 +0.3
928,473 - LRK53_RS03975 0.24 -0.6
928,473 - LRK53_RS03975 0.24 -0.0
928,564 + LRK53_RS03975 0.56 -1.3
928,564 + LRK53_RS03975 0.56 -0.6
928,564 + LRK53_RS03975 0.56 -0.6
928,564 + LRK53_RS03975 0.56 +1.0
928,564 + LRK53_RS03975 0.56 -0.0
928,564 + LRK53_RS03975 0.56 +1.2
928,565 - LRK53_RS03975 0.56 +0.4
928,565 - LRK53_RS03975 0.56 -2.9
928,768 + -0.4
928,768 + -0.7
928,769 - +0.4
928,769 - +1.0
929,197 + LRK53_RS03980 0.29 -0.0
929,197 + LRK53_RS03980 0.29 +2.0
929,197 + LRK53_RS03980 0.29 -0.5
929,197 + LRK53_RS03980 0.29 +0.1
929,197 + LRK53_RS03980 0.29 -1.3
929,197 + LRK53_RS03980 0.29 -1.2
929,197 + LRK53_RS03980 0.29 -0.3
929,198 - LRK53_RS03980 0.29 +0.4
929,198 - LRK53_RS03980 0.29 -1.3
929,198 - LRK53_RS03980 0.29 -0.3
929,198 - LRK53_RS03980 0.29 -1.0
929,198 - LRK53_RS03980 0.29 -0.6
929,198 - LRK53_RS03980 0.29 -0.0
929,198 - LRK53_RS03980 0.29 -0.0
929,198 - LRK53_RS03980 0.29 -1.2
929,198 - LRK53_RS03980 0.29 -1.3
929,198 - LRK53_RS03980 0.29 -0.6
929,198 - LRK53_RS03980 0.29 -0.0
929,198 - LRK53_RS03980 0.29 +0.4
929,198 - LRK53_RS03980 0.29 -0.3
929,247 + LRK53_RS03980 0.32 -0.7
929,247 + LRK53_RS03980 0.32 -1.3
929,248 - LRK53_RS03980 0.32 -0.3
929,301 + LRK53_RS03980 0.36 -0.3
929,301 + LRK53_RS03980 0.36 +1.0
929,301 + LRK53_RS03980 0.36 -1.0
929,302 - LRK53_RS03980 0.36 +0.7
929,302 - LRK53_RS03980 0.36 +0.6
929,302 - LRK53_RS03980 0.36 +0.3
929,302 - LRK53_RS03980 0.36 -0.2
929,302 - LRK53_RS03980 0.36 -0.2
929,302 - LRK53_RS03980 0.36 -0.6
929,302 - LRK53_RS03980 0.36 -0.6
929,343 + LRK53_RS03980 0.39 -0.6
929,344 - LRK53_RS03980 0.39 -0.6
929,344 - LRK53_RS03980 0.39 -0.2
929,344 - LRK53_RS03980 0.39 -0.9
929,448 + LRK53_RS03980 0.47 -0.6
929,448 + LRK53_RS03980 0.47 -0.3
929,449 - LRK53_RS03980 0.47 -0.3
929,469 + LRK53_RS03980 0.48 -0.3
929,469 + LRK53_RS03980 0.48 +0.7
929,469 + LRK53_RS03980 0.48 +1.0
929,469 + LRK53_RS03980 0.48 -1.2
929,470 - LRK53_RS03980 0.48 -0.5

Or see this region's nucleotide sequence