Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03275 and LRK53_RS03280 are separated by 12 nucleotides LRK53_RS03280 and LRK53_RS03285 are separated by 244 nucleotides
LRK53_RS03275: LRK53_RS03275 - amino acid permease, at 772,021 to 773,532
_RS03275
LRK53_RS03280: LRK53_RS03280 - GGDEF domain-containing protein, at 773,545 to 774,627
_RS03280
LRK53_RS03285: LRK53_RS03285 - M61 family metallopeptidase, at 774,872 to 776,770
_RS03285
Position (kb) 773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.837 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.972 kb on + strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 773.416 kb on + strand at 773.437 kb on + strand at 773.438 kb on - strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.489 kb on - strand at 773.489 kb on - strand at 773.885 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.141 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.560 kb on + strand at 774.560 kb on + strand at 774.560 kb on + strand at 774.569 kb on + strand at 774.569 kb on + strand at 774.570 kb on - strand at 774.570 kb on - strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.726 kb on + strand at 774.772 kb on - strand at 774.971 kb on + strand at 774.972 kb on - strand at 775.076 kb on + strand, within LRK53_RS03285 at 775.077 kb on - strand, within LRK53_RS03285 at 775.193 kb on + strand, within LRK53_RS03285 at 775.193 kb on + strand, within LRK53_RS03285 at 775.194 kb on - strand, within LRK53_RS03285 at 775.194 kb on - strand, within LRK53_RS03285 at 775.334 kb on + strand, within LRK53_RS03285 at 775.334 kb on + strand, within LRK53_RS03285 at 775.335 kb on - strand, within LRK53_RS03285 at 775.346 kb on + strand, within LRK53_RS03285 at 775.346 kb on + strand, within LRK53_RS03285 at 775.466 kb on + strand, within LRK53_RS03285 at 775.466 kb on + strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.493 kb on + strand, within LRK53_RS03285 at 775.493 kb on + strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.580 kb on + strand, within LRK53_RS03285 at 775.580 kb on + strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 772,708 + LRK53_RS03275 0.45 -0.2 772,708 + LRK53_RS03275 0.45 -1.0 772,708 + LRK53_RS03275 0.45 +1.0 772,708 + LRK53_RS03275 0.45 -1.0 772,708 + LRK53_RS03275 0.45 -0.0 772,708 + LRK53_RS03275 0.45 +0.3 772,709 - LRK53_RS03275 0.46 -0.6 772,709 - LRK53_RS03275 0.46 +1.0 772,709 - LRK53_RS03275 0.46 +0.4 772,709 - LRK53_RS03275 0.46 +0.8 772,837 + LRK53_RS03275 0.54 +1.0 772,933 + LRK53_RS03275 0.60 -0.6 772,933 + LRK53_RS03275 0.60 -2.0 772,933 + LRK53_RS03275 0.60 -2.0 772,934 - LRK53_RS03275 0.60 -1.0 772,934 - LRK53_RS03275 0.60 +1.0 772,934 - LRK53_RS03275 0.60 +1.0 772,934 - LRK53_RS03275 0.60 -1.8 772,972 + LRK53_RS03275 0.63 -0.3 772,973 - LRK53_RS03275 0.63 +0.2 772,973 - LRK53_RS03275 0.63 +0.2 772,973 - LRK53_RS03275 0.63 -0.0 773,416 + -0.0 773,437 + +0.2 773,438 - -0.6 773,479 + -1.0 773,479 + -1.2 773,479 + +0.2 773,479 + -0.0 773,479 + -1.0 773,479 + -1.3 773,479 + -0.3 773,480 - -1.2 773,480 - -1.0 773,480 - -0.2 773,480 - +2.6 773,480 - -1.0 773,480 - -0.3 773,480 - -1.6 773,489 - +0.3 773,489 - -1.3 773,885 + LRK53_RS03280 0.31 -1.8 774,131 + LRK53_RS03280 0.54 -0.0 774,131 + LRK53_RS03280 0.54 -2.0 774,131 + LRK53_RS03280 0.54 +1.0 774,131 + LRK53_RS03280 0.54 -1.0 774,131 + LRK53_RS03280 0.54 -0.8 774,131 + LRK53_RS03280 0.54 -1.0 774,131 + LRK53_RS03280 0.54 -0.8 774,131 + LRK53_RS03280 0.54 -0.0 774,131 + LRK53_RS03280 0.54 +2.0 774,131 + LRK53_RS03280 0.54 -0.0 774,131 + LRK53_RS03280 0.54 -1.3 774,131 + LRK53_RS03280 0.54 -0.6 774,132 - LRK53_RS03280 0.54 -0.1 774,132 - LRK53_RS03280 0.54 -2.2 774,132 - LRK53_RS03280 0.54 -0.6 774,132 - LRK53_RS03280 0.54 +0.4 774,132 - LRK53_RS03280 0.54 -0.6 774,132 - LRK53_RS03280 0.54 -0.8 774,132 - LRK53_RS03280 0.54 -1.2 774,132 - LRK53_RS03280 0.54 -1.4 774,132 - LRK53_RS03280 0.54 -0.3 774,132 - LRK53_RS03280 0.54 -0.0 774,132 - LRK53_RS03280 0.54 -1.2 774,132 - LRK53_RS03280 0.54 -0.4 774,140 + LRK53_RS03280 0.55 -0.0 774,140 + LRK53_RS03280 0.55 +1.0 774,140 + LRK53_RS03280 0.55 -0.8 774,141 - LRK53_RS03280 0.55 -1.0 774,149 - LRK53_RS03280 0.56 -0.0 774,149 - LRK53_RS03280 0.56 -0.0 774,149 - LRK53_RS03280 0.56 +1.0 774,149 - LRK53_RS03280 0.56 -1.3 774,501 - LRK53_RS03280 0.88 +0.2 774,501 - LRK53_RS03280 0.88 +0.5 774,501 - LRK53_RS03280 0.88 -1.6 774,501 - LRK53_RS03280 0.88 -1.0 774,501 - LRK53_RS03280 0.88 +1.0 774,501 - LRK53_RS03280 0.88 -0.2 774,560 + -0.2 774,560 + -0.0 774,560 + -0.6 774,569 + -0.2 774,569 + -1.3 774,570 - -0.4 774,570 - -0.6 774,623 + -1.0 774,623 + -1.6 774,623 + -1.3 774,623 + -0.6 774,623 + -0.0 774,623 + -1.0 774,623 + +1.0 774,623 + -1.1 774,623 + +0.1 774,623 + +1.6 774,623 + -0.0 774,623 + -0.4 774,623 + -0.3 774,624 - +3.0 774,624 - -0.5 774,624 - -1.6 774,624 - +0.2 774,624 - +0.4 774,624 - -0.4 774,624 - -0.8 774,624 - -0.9 774,624 - -0.3 774,624 - -0.0 774,624 - -0.4 774,624 - +0.4 774,726 + -0.0 774,772 - -1.1 774,971 + -0.8 774,972 - -0.5 775,076 + LRK53_RS03285 0.11 -0.7 775,077 - LRK53_RS03285 0.11 -0.0 775,193 + LRK53_RS03285 0.17 -0.6 775,193 + LRK53_RS03285 0.17 -0.0 775,194 - LRK53_RS03285 0.17 -0.9 775,194 - LRK53_RS03285 0.17 +2.0 775,334 + LRK53_RS03285 0.24 -0.6 775,334 + LRK53_RS03285 0.24 +1.4 775,335 - LRK53_RS03285 0.24 -0.3 775,346 + LRK53_RS03285 0.25 +0.7 775,346 + LRK53_RS03285 0.25 -0.0 775,466 + LRK53_RS03285 0.31 -0.0 775,466 + LRK53_RS03285 0.31 -1.3 775,467 - LRK53_RS03285 0.31 -2.6 775,467 - LRK53_RS03285 0.31 +1.0 775,467 - LRK53_RS03285 0.31 -1.5 775,467 - LRK53_RS03285 0.31 +0.7 775,467 - LRK53_RS03285 0.31 -1.6 775,467 - LRK53_RS03285 0.31 -0.6 775,467 - LRK53_RS03285 0.31 -1.0 775,467 - LRK53_RS03285 0.31 -0.0 775,467 - LRK53_RS03285 0.31 -0.9 775,493 + LRK53_RS03285 0.33 -1.0 775,493 + LRK53_RS03285 0.33 +0.6 775,494 - LRK53_RS03285 0.33 -0.0 775,494 - LRK53_RS03285 0.33 -0.0 775,494 - LRK53_RS03285 0.33 +2.0 775,494 - LRK53_RS03285 0.33 -1.0 775,505 + LRK53_RS03285 0.33 -1.0 775,505 + LRK53_RS03285 0.33 -2.7 775,505 + LRK53_RS03285 0.33 -0.6 775,505 + LRK53_RS03285 0.33 +1.0 775,505 + LRK53_RS03285 0.33 -1.3 775,505 + LRK53_RS03285 0.33 -1.1 775,506 - LRK53_RS03285 0.33 +1.6 775,506 - LRK53_RS03285 0.33 -1.5 775,506 - LRK53_RS03285 0.33 -1.3 775,506 - LRK53_RS03285 0.33 +0.4 775,506 - LRK53_RS03285 0.33 -1.2 775,506 - LRK53_RS03285 0.33 -0.0 775,506 - LRK53_RS03285 0.33 -0.6 775,550 + LRK53_RS03285 0.36 -0.6 775,550 + LRK53_RS03285 0.36 -0.7 775,550 + LRK53_RS03285 0.36 +0.2 775,551 - LRK53_RS03285 0.36 -0.2 775,551 - LRK53_RS03285 0.36 -0.2 775,551 - LRK53_RS03285 0.36 +0.4 775,551 - LRK53_RS03285 0.36 +0.8 775,551 - LRK53_RS03285 0.36 -1.1 775,551 - LRK53_RS03285 0.36 -0.6 775,580 + LRK53_RS03285 0.37 +0.4 775,580 + LRK53_RS03285 0.37 -0.6 775,581 - LRK53_RS03285 0.37 -0.0 775,581 - LRK53_RS03285 0.37 -1.0 775,581 - LRK53_RS03285 0.37 -1.1 775,581 - LRK53_RS03285 0.37 -1.3 775,581 - LRK53_RS03285 0.37 -0.6 775,581 - LRK53_RS03285 0.37 +3.3
Or see this region's nucleotide sequence