Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01510

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01500 and LRK53_RS01505 are separated by 88 nucleotidesLRK53_RS01505 and LRK53_RS01510 are separated by 54 nucleotidesLRK53_RS01510 and LRK53_RS01515 are separated by 352 nucleotides LRK53_RS01500: LRK53_RS01500 - serine/threonine protein kinase, at 358,075 to 359,037 _RS01500 LRK53_RS01505: LRK53_RS01505 - hotdog fold thioesterase, at 359,126 to 359,566 _RS01505 LRK53_RS01510: LRK53_RS01510 - 2Fe-2S iron-sulfur cluster-binding protein, at 359,621 to 360,691 _RS01510 LRK53_RS01515: LRK53_RS01515 - IS110 family transposase, at 361,044 to 362,066 _RS01515 Position (kb) 359 360 361Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 358.856 kb on + strand, within LRK53_RS01500at 358.856 kb on + strand, within LRK53_RS01500at 358.857 kb on - strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.931 kb on + strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 358.932 kb on - strand, within LRK53_RS01500at 359.018 kb on + strandat 359.347 kb on + strand, within LRK53_RS01505at 359.347 kb on + strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.348 kb on - strand, within LRK53_RS01505at 359.482 kb on + strand, within LRK53_RS01505at 359.483 kb on - strand, within LRK53_RS01505at 359.580 kb on - strandat 359.729 kb on + strand, within LRK53_RS01510at 359.729 kb on + strand, within LRK53_RS01510at 359.729 kb on + strand, within LRK53_RS01510at 359.729 kb on + strand, within LRK53_RS01510at 359.730 kb on - strand, within LRK53_RS01510at 359.730 kb on - strand, within LRK53_RS01510at 359.793 kb on - strand, within LRK53_RS01510at 359.793 kb on - strand, within LRK53_RS01510at 360.038 kb on + strand, within LRK53_RS01510at 360.039 kb on - strand, within LRK53_RS01510at 360.039 kb on - strand, within LRK53_RS01510at 360.039 kb on - strand, within LRK53_RS01510at 360.341 kb on + strand, within LRK53_RS01510at 360.341 kb on + strand, within LRK53_RS01510at 360.341 kb on + strand, within LRK53_RS01510at 360.341 kb on + strand, within LRK53_RS01510at 360.342 kb on - strand, within LRK53_RS01510at 360.371 kb on + strand, within LRK53_RS01510at 360.371 kb on + strand, within LRK53_RS01510at 360.371 kb on + strand, within LRK53_RS01510at 360.372 kb on - strand, within LRK53_RS01510at 360.372 kb on - strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.527 kb on + strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.528 kb on - strand, within LRK53_RS01510at 360.605 kb on + strandat 360.605 kb on + strandat 360.605 kb on + strandat 360.605 kb on + strandat 360.605 kb on + strandat 360.605 kb on + strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.606 kb on - strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.608 kb on + strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.609 kb on - strandat 360.623 kb on + strandat 360.623 kb on + strandat 360.624 kb on - strandat 360.690 kb on - strandat 360.690 kb on - strandat 360.690 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strandat 360.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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358,856 + LRK53_RS01500 0.81 -1.8
358,856 + LRK53_RS01500 0.81 -1.8
358,857 - LRK53_RS01500 0.81 +1.0
358,931 + LRK53_RS01500 0.89 -1.3
358,931 + LRK53_RS01500 0.89 +0.0
358,931 + LRK53_RS01500 0.89 -1.4
358,931 + LRK53_RS01500 0.89 -0.6
358,931 + LRK53_RS01500 0.89 -1.8
358,931 + LRK53_RS01500 0.89 -2.7
358,931 + LRK53_RS01500 0.89 +2.0
358,932 - LRK53_RS01500 0.89 -1.0
358,932 - LRK53_RS01500 0.89 -0.8
358,932 - LRK53_RS01500 0.89 -0.8
358,932 - LRK53_RS01500 0.89 +1.0
358,932 - LRK53_RS01500 0.89 -1.0
358,932 - LRK53_RS01500 0.89 +0.0
358,932 - LRK53_RS01500 0.89 -0.5
358,932 - LRK53_RS01500 0.89 -1.3
359,018 + -2.0
359,347 + LRK53_RS01505 0.50 +0.5
359,347 + LRK53_RS01505 0.50 -0.5
359,348 - LRK53_RS01505 0.50 -1.5
359,348 - LRK53_RS01505 0.50 +0.0
359,348 - LRK53_RS01505 0.50 -1.3
359,348 - LRK53_RS01505 0.50 -0.5
359,348 - LRK53_RS01505 0.50 +0.0
359,348 - LRK53_RS01505 0.50 +0.6
359,482 + LRK53_RS01505 0.81 -0.2
359,483 - LRK53_RS01505 0.81 -1.8
359,580 - +0.0
359,729 + LRK53_RS01510 0.10 +0.6
359,729 + LRK53_RS01510 0.10 -2.1
359,729 + LRK53_RS01510 0.10 +1.0
359,729 + LRK53_RS01510 0.10 -1.0
359,730 - LRK53_RS01510 0.10 -2.1
359,730 - LRK53_RS01510 0.10 -0.9
359,793 - LRK53_RS01510 0.16 -0.5
359,793 - LRK53_RS01510 0.16 -0.1
360,038 + LRK53_RS01510 0.39 -1.4
360,039 - LRK53_RS01510 0.39 +0.3
360,039 - LRK53_RS01510 0.39 -1.4
360,039 - LRK53_RS01510 0.39 -1.5
360,341 + LRK53_RS01510 0.67 -0.8
360,341 + LRK53_RS01510 0.67 +1.0
360,341 + LRK53_RS01510 0.67 +0.0
360,341 + LRK53_RS01510 0.67 -1.7
360,342 - LRK53_RS01510 0.67 -1.8
360,371 + LRK53_RS01510 0.70 +0.0
360,371 + LRK53_RS01510 0.70 -1.5
360,371 + LRK53_RS01510 0.70 +1.0
360,372 - LRK53_RS01510 0.70 +0.3
360,372 - LRK53_RS01510 0.70 -0.5
360,527 + LRK53_RS01510 0.85 -0.8
360,527 + LRK53_RS01510 0.85 +0.5
360,527 + LRK53_RS01510 0.85 -1.3
360,527 + LRK53_RS01510 0.85 -2.8
360,527 + LRK53_RS01510 0.85 -1.5
360,527 + LRK53_RS01510 0.85 +0.0
360,527 + LRK53_RS01510 0.85 -0.7
360,527 + LRK53_RS01510 0.85 -0.3
360,527 + LRK53_RS01510 0.85 -0.3
360,527 + LRK53_RS01510 0.85 +1.0
360,527 + LRK53_RS01510 0.85 +0.5
360,527 + LRK53_RS01510 0.85 -1.1
360,527 + LRK53_RS01510 0.85 -0.6
360,527 + LRK53_RS01510 0.85 +0.2
360,527 + LRK53_RS01510 0.85 -1.0
360,527 + LRK53_RS01510 0.85 -1.1
360,527 + LRK53_RS01510 0.85 -1.8
360,527 + LRK53_RS01510 0.85 -0.8
360,527 + LRK53_RS01510 0.85 -2.0
360,527 + LRK53_RS01510 0.85 -1.3
360,527 + LRK53_RS01510 0.85 -1.3
360,527 + LRK53_RS01510 0.85 +1.0
360,527 + LRK53_RS01510 0.85 -0.1
360,527 + LRK53_RS01510 0.85 -1.0
360,527 + LRK53_RS01510 0.85 +0.5
360,527 + LRK53_RS01510 0.85 +1.0
360,527 + LRK53_RS01510 0.85 -1.1
360,527 + LRK53_RS01510 0.85 -1.8
360,527 + LRK53_RS01510 0.85 -1.3
360,527 + LRK53_RS01510 0.85 -1.5
360,528 - LRK53_RS01510 0.85 +2.0
360,528 - LRK53_RS01510 0.85 -1.0
360,528 - LRK53_RS01510 0.85 +0.0
360,528 - LRK53_RS01510 0.85 -3.4
360,528 - LRK53_RS01510 0.85 +0.8
360,528 - LRK53_RS01510 0.85 -1.4
360,528 - LRK53_RS01510 0.85 +0.0
360,528 - LRK53_RS01510 0.85 +0.5
360,528 - LRK53_RS01510 0.85 -0.4
360,528 - LRK53_RS01510 0.85 +0.5
360,528 - LRK53_RS01510 0.85 -1.0
360,528 - LRK53_RS01510 0.85 -1.0
360,528 - LRK53_RS01510 0.85 -0.5
360,528 - LRK53_RS01510 0.85 -0.8
360,528 - LRK53_RS01510 0.85 +1.0
360,528 - LRK53_RS01510 0.85 -0.5
360,528 - LRK53_RS01510 0.85 +0.5
360,528 - LRK53_RS01510 0.85 +1.0
360,528 - LRK53_RS01510 0.85 -1.3
360,528 - LRK53_RS01510 0.85 -1.3
360,528 - LRK53_RS01510 0.85 +0.5
360,528 - LRK53_RS01510 0.85 -1.1
360,528 - LRK53_RS01510 0.85 -1.1
360,528 - LRK53_RS01510 0.85 -0.8
360,528 - LRK53_RS01510 0.85 -1.3
360,528 - LRK53_RS01510 0.85 +0.7
360,528 - LRK53_RS01510 0.85 -0.1
360,528 - LRK53_RS01510 0.85 -0.5
360,528 - LRK53_RS01510 0.85 -2.0
360,528 - LRK53_RS01510 0.85 -0.7
360,528 - LRK53_RS01510 0.85 -1.3
360,528 - LRK53_RS01510 0.85 -0.4
360,528 - LRK53_RS01510 0.85 -0.3
360,528 - LRK53_RS01510 0.85 -0.4
360,528 - LRK53_RS01510 0.85 +0.7
360,528 - LRK53_RS01510 0.85 +1.0
360,528 - LRK53_RS01510 0.85 -0.8
360,528 - LRK53_RS01510 0.85 -0.5
360,528 - LRK53_RS01510 0.85 -1.5
360,528 - LRK53_RS01510 0.85 +1.0
360,528 - LRK53_RS01510 0.85 +0.4
360,528 - LRK53_RS01510 0.85 -0.4
360,605 + -0.6
360,605 + -0.7
360,605 + +1.0
360,605 + -1.6
360,605 + -1.0
360,605 + -0.7
360,606 - +0.0
360,606 - +0.3
360,606 - +1.0
360,606 - -1.0
360,606 - -1.0
360,606 - -0.8
360,606 - -0.4
360,606 - -0.3
360,606 - -0.6
360,606 - -0.5
360,608 + +0.2
360,608 + +0.2
360,608 + -1.0
360,608 + +0.0
360,608 + +0.4
360,608 + +0.0
360,608 + -1.8
360,609 - -1.1
360,609 - -0.5
360,609 - +0.0
360,609 - -0.8
360,609 - -1.8
360,609 - -1.3
360,609 - -0.4
360,623 + -0.5
360,623 + -0.5
360,624 - -0.4
360,690 - -0.5
360,690 - -0.7
360,690 - +0.6
360,807 - +1.0
360,807 - -1.5
360,807 - -0.9
360,807 - +1.0
360,807 - -1.0
360,807 - -0.5
360,807 - -0.7

Or see this region's nucleotide sequence