Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19135

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19130 and LRK53_RS19135 are separated by 122 nucleotidesLRK53_RS19135 and LRK53_RS19140 overlap by 4 nucleotidesLRK53_RS19140 and LRK53_RS19145 overlap by 4 nucleotides LRK53_RS19130: LRK53_RS19130 - DNA polymerase III subunit beta, at 209,517 to 210,620 _RS19130 LRK53_RS19135: LRK53_RS19135 - hypothetical protein, at 210,743 to 211,420 _RS19135 LRK53_RS19140: LRK53_RS19140 - hypothetical protein, at 211,417 to 211,875 _RS19140 LRK53_RS19145: LRK53_RS19145 - hypothetical protein, at 211,872 to 212,369 _RS19145 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.833 kb on - strand, within LRK53_RS19130at 209.947 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.972 kb on + strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.973 kb on - strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.976 kb on + strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 209.977 kb on - strand, within LRK53_RS19130at 210.090 kb on + strand, within LRK53_RS19130at 210.090 kb on + strand, within LRK53_RS19130at 210.090 kb on + strand, within LRK53_RS19130at 210.090 kb on + strand, within LRK53_RS19130at 210.091 kb on - strand, within LRK53_RS19130at 210.293 kb on - strand, within LRK53_RS19130at 210.293 kb on - strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.351 kb on + strand, within LRK53_RS19130at 210.468 kb on + strand, within LRK53_RS19130at 210.468 kb on + strand, within LRK53_RS19130at 210.468 kb on + strand, within LRK53_RS19130at 210.468 kb on + strand, within LRK53_RS19130at 210.468 kb on + strand, within LRK53_RS19130at 210.469 kb on - strand, within LRK53_RS19130at 210.469 kb on - strand, within LRK53_RS19130at 210.469 kb on - strand, within LRK53_RS19130at 210.469 kb on - strand, within LRK53_RS19130at 210.469 kb on - strand, within LRK53_RS19130at 210.486 kb on + strand, within LRK53_RS19130at 210.486 kb on + strand, within LRK53_RS19130at 210.487 kb on - strand, within LRK53_RS19130at 210.487 kb on - strand, within LRK53_RS19130at 210.636 kb on + strandat 210.733 kb on + strandat 210.733 kb on + strandat 210.733 kb on + strandat 210.734 kb on - strandat 210.749 kb on + strandat 210.949 kb on - strand, within LRK53_RS19135at 211.028 kb on + strand, within LRK53_RS19135at 211.124 kb on + strand, within LRK53_RS19135at 211.124 kb on + strand, within LRK53_RS19135at 211.124 kb on + strand, within LRK53_RS19135at 211.214 kb on + strand, within LRK53_RS19135at 211.361 kb on + strandat 211.459 kb on + strandat 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.489 kb on - strand, within LRK53_RS19140at 211.572 kb on + strand, within LRK53_RS19140at 211.829 kb on + strand, within LRK53_RS19140at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.973 kb on + strand, within LRK53_RS19145at 212.008 kb on + strand, within LRK53_RS19145at 212.009 kb on - strand, within LRK53_RS19145at 212.041 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.299 kb on - strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.308 kb on - strand, within LRK53_RS19145

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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209,833 - LRK53_RS19130 0.29 -0.5
209,947 + LRK53_RS19130 0.39 +0.5
209,972 + LRK53_RS19130 0.41 -0.9
209,972 + LRK53_RS19130 0.41 -0.7
209,972 + LRK53_RS19130 0.41 -0.7
209,972 + LRK53_RS19130 0.41 -1.5
209,972 + LRK53_RS19130 0.41 -0.8
209,972 + LRK53_RS19130 0.41 -0.5
209,972 + LRK53_RS19130 0.41 -0.7
209,972 + LRK53_RS19130 0.41 +1.9
209,972 + LRK53_RS19130 0.41 -0.5
209,972 + LRK53_RS19130 0.41 -1.9
209,972 + LRK53_RS19130 0.41 +1.9
209,973 - LRK53_RS19130 0.41 -0.6
209,973 - LRK53_RS19130 0.41 -1.5
209,973 - LRK53_RS19130 0.41 -0.7
209,973 - LRK53_RS19130 0.41 -1.5
209,973 - LRK53_RS19130 0.41 -0.8
209,973 - LRK53_RS19130 0.41 +0.2
209,973 - LRK53_RS19130 0.41 -2.6
209,973 - LRK53_RS19130 0.41 -1.3
209,973 - LRK53_RS19130 0.41 -1.9
209,973 - LRK53_RS19130 0.41 -1.1
209,973 - LRK53_RS19130 0.41 -1.0
209,973 - LRK53_RS19130 0.41 -1.1
209,973 - LRK53_RS19130 0.41 -0.5
209,973 - LRK53_RS19130 0.41 +0.9
209,973 - LRK53_RS19130 0.41 +0.1
209,973 - LRK53_RS19130 0.41 -0.5
209,976 + LRK53_RS19130 0.42 +0.3
209,976 + LRK53_RS19130 0.42 -1.5
209,976 + LRK53_RS19130 0.42 -0.8
209,976 + LRK53_RS19130 0.42 -2.6
209,976 + LRK53_RS19130 0.42 -0.7
209,976 + LRK53_RS19130 0.42 -1.3
209,977 - LRK53_RS19130 0.42 +0.9
209,977 - LRK53_RS19130 0.42 -0.4
209,977 - LRK53_RS19130 0.42 -0.6
209,977 - LRK53_RS19130 0.42 -1.1
209,977 - LRK53_RS19130 0.42 -0.7
209,977 - LRK53_RS19130 0.42 -1.5
209,977 - LRK53_RS19130 0.42 -0.8
209,977 - LRK53_RS19130 0.42 +0.9
209,977 - LRK53_RS19130 0.42 -0.6
209,977 - LRK53_RS19130 0.42 -0.1
209,977 - LRK53_RS19130 0.42 +0.3
209,977 - LRK53_RS19130 0.42 -0.5
209,977 - LRK53_RS19130 0.42 -0.7
210,090 + LRK53_RS19130 0.52 -1.0
210,090 + LRK53_RS19130 0.52 -1.5
210,090 + LRK53_RS19130 0.52 +0.2
210,090 + LRK53_RS19130 0.52 +0.9
210,091 - LRK53_RS19130 0.52 -0.3
210,293 - LRK53_RS19130 0.70 -1.4
210,293 - LRK53_RS19130 0.70 -0.8
210,351 + LRK53_RS19130 0.76 -1.2
210,351 + LRK53_RS19130 0.76 +2.4
210,351 + LRK53_RS19130 0.76 -0.9
210,351 + LRK53_RS19130 0.76 -1.3
210,351 + LRK53_RS19130 0.76 -1.9
210,351 + LRK53_RS19130 0.76 -1.1
210,351 + LRK53_RS19130 0.76 -1.6
210,351 + LRK53_RS19130 0.76 -1.9
210,468 + LRK53_RS19130 0.86 -2.3
210,468 + LRK53_RS19130 0.86 -1.3
210,468 + LRK53_RS19130 0.86 -0.7
210,468 + LRK53_RS19130 0.86 -0.7
210,468 + LRK53_RS19130 0.86 +0.9
210,469 - LRK53_RS19130 0.86 -1.9
210,469 - LRK53_RS19130 0.86 -1.2
210,469 - LRK53_RS19130 0.86 -0.4
210,469 - LRK53_RS19130 0.86 -1.1
210,469 - LRK53_RS19130 0.86 -0.1
210,486 + LRK53_RS19130 0.88 -0.1
210,486 + LRK53_RS19130 0.88 +0.4
210,487 - LRK53_RS19130 0.88 -0.1
210,487 - LRK53_RS19130 0.88 -0.7
210,636 + -1.3
210,733 + -0.1
210,733 + +0.9
210,733 + -0.7
210,734 - -0.1
210,749 + -1.9
210,949 - LRK53_RS19135 0.30 -2.1
211,028 + LRK53_RS19135 0.42 +0.3
211,124 + LRK53_RS19135 0.56 -0.8
211,124 + LRK53_RS19135 0.56 -1.7
211,124 + LRK53_RS19135 0.56 -0.7
211,214 + LRK53_RS19135 0.69 -1.5
211,361 + -1.7
211,459 + +1.2
211,488 + LRK53_RS19140 0.15 -0.1
211,488 + LRK53_RS19140 0.15 -1.1
211,488 + LRK53_RS19140 0.15 -0.1
211,489 - LRK53_RS19140 0.16 -0.5
211,572 + LRK53_RS19140 0.34 +0.9
211,829 + LRK53_RS19140 0.90 +0.2
211,971 + LRK53_RS19145 0.20 -0.6
211,971 + LRK53_RS19145 0.20 +0.3
211,971 + LRK53_RS19145 0.20 -1.7
211,971 + LRK53_RS19145 0.20 +1.9
211,972 - LRK53_RS19145 0.20 -1.5
211,972 - LRK53_RS19145 0.20 -0.5
211,972 - LRK53_RS19145 0.20 -1.7
211,972 - LRK53_RS19145 0.20 -1.0
211,972 - LRK53_RS19145 0.20 -1.1
211,972 - LRK53_RS19145 0.20 +0.2
211,973 + LRK53_RS19145 0.20 -0.5
212,008 + LRK53_RS19145 0.27 -0.5
212,009 - LRK53_RS19145 0.28 +1.2
212,041 + LRK53_RS19145 0.34 -1.1
212,044 + LRK53_RS19145 0.35 +0.0
212,044 + LRK53_RS19145 0.35 -0.1
212,045 - LRK53_RS19145 0.35 -1.7
212,045 - LRK53_RS19145 0.35 -2.0
212,045 - LRK53_RS19145 0.35 -1.6
212,045 - LRK53_RS19145 0.35 +0.4
212,045 - LRK53_RS19145 0.35 +0.3
212,057 + LRK53_RS19145 0.37 -0.8
212,057 + LRK53_RS19145 0.37 +0.1
212,057 + LRK53_RS19145 0.37 -0.7
212,298 + LRK53_RS19145 0.86 -1.6
212,298 + LRK53_RS19145 0.86 -1.9
212,298 + LRK53_RS19145 0.86 -1.5
212,298 + LRK53_RS19145 0.86 -1.9
212,298 + LRK53_RS19145 0.86 -0.4
212,299 - LRK53_RS19145 0.86 +0.3
212,307 + LRK53_RS19145 0.87 -0.4
212,307 + LRK53_RS19145 0.87 +0.6
212,307 + LRK53_RS19145 0.87 -1.4
212,307 + LRK53_RS19145 0.87 -0.7
212,307 + LRK53_RS19145 0.87 -0.9
212,308 - LRK53_RS19145 0.88 -1.1

Or see this region's nucleotide sequence