Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18990 and LRK53_RS18995 are separated by 85 nucleotides LRK53_RS18995 and LRK53_RS19000 are separated by 117 nucleotides LRK53_RS19000 and LRK53_RS19005 are separated by 85 nucleotides LRK53_RS19005 and LRK53_RS19010 overlap by 28 nucleotides
LRK53_RS18990: LRK53_RS18990 - hypothetical protein, at 189,702 to 190,061
_RS18990
LRK53_RS18995: LRK53_RS18995 - hypothetical protein, at 190,147 to 190,500
_RS18995
LRK53_RS19000: LRK53_RS19000 - hypothetical protein, at 190,618 to 190,953
_RS19000
LRK53_RS19005: LRK53_RS19005 - phosphoadenosine phosphosulfate reductase family protein, at 191,039 to 192,148
_RS19005
LRK53_RS19010: LRK53_RS19010 - hypothetical protein, at 192,121 to 193,170
_RS19010
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.110 kb on + strand at 190.111 kb on - strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.210 kb on + strand, within LRK53_RS18995 at 190.210 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.412 kb on - strand, within LRK53_RS18995 at 190.517 kb on + strand at 190.517 kb on + strand at 190.517 kb on + strand at 190.664 kb on + strand, within LRK53_RS19000 at 190.665 kb on - strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.884 kb on + strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.951 kb on + strand at 190.952 kb on - strand at 190.952 kb on - strand at 190.952 kb on - strand at 191.001 kb on - strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.451 kb on + strand, within LRK53_RS19005 at 191.451 kb on + strand, within LRK53_RS19005 at 191.452 kb on - strand, within LRK53_RS19005 at 191.675 kb on + strand, within LRK53_RS19005 at 191.777 kb on + strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 192.089 kb on + strand at 192.090 kb on - strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.149 kb on + strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.245 kb on + strand, within LRK53_RS19010 at 192.245 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.389 kb on - strand, within LRK53_RS19010 at 192.479 kb on + strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.550 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.797 kb on + strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.836 kb on + strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.962 kb on - strand, within LRK53_RS19010 at 193.011 kb on - strand, within LRK53_RS19010 at 193.139 kb on + strand at 193.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 190,059 + -1.9 190,059 + +0.9 190,059 + -0.2 190,059 + -1.2 190,059 + -2.0 190,060 - -1.5 190,060 - -0.5 190,060 - -0.6 190,060 - -0.1 190,110 + -0.6 190,111 - +0.3 190,114 + -0.7 190,114 + -0.5 190,114 + -2.8 190,114 + +0.5 190,114 + -1.3 190,114 + +0.3 190,114 + -1.1 190,115 - -1.5 190,115 - -1.1 190,115 - +0.3 190,115 - -0.5 190,115 - -0.5 190,115 - -1.1 190,115 - -0.1 190,115 - -0.7 190,115 - +0.6 190,115 - -1.5 190,115 - -0.9 190,115 - -1.5 190,115 - -1.8 190,115 - -0.1 190,115 - -2.3 190,115 - -1.0 190,115 - -0.5 190,115 - -1.3 190,115 - -2.5 190,115 - +0.9 190,210 + LRK53_RS18995 0.18 -0.8 190,210 + LRK53_RS18995 0.18 -1.2 190,295 + LRK53_RS18995 0.42 +0.3 190,295 + LRK53_RS18995 0.42 +0.4 190,412 - LRK53_RS18995 0.75 -0.5 190,517 + +0.1 190,517 + +0.9 190,517 + +0.4 190,664 + LRK53_RS19000 0.14 +0.9 190,665 - LRK53_RS19000 0.14 -0.1 190,882 + LRK53_RS19000 0.79 +0.9 190,882 + LRK53_RS19000 0.79 -0.9 190,882 + LRK53_RS19000 0.79 -1.1 190,882 + LRK53_RS19000 0.79 -0.7 190,882 + LRK53_RS19000 0.79 -0.9 190,882 + LRK53_RS19000 0.79 -0.1 190,882 + LRK53_RS19000 0.79 -1.1 190,882 + LRK53_RS19000 0.79 -1.0 190,883 - LRK53_RS19000 0.79 -0.1 190,883 - LRK53_RS19000 0.79 -1.6 190,883 - LRK53_RS19000 0.79 -1.3 190,883 - LRK53_RS19000 0.79 -0.9 190,883 - LRK53_RS19000 0.79 -0.1 190,883 - LRK53_RS19000 0.79 +0.3 190,883 - LRK53_RS19000 0.79 -1.1 190,883 - LRK53_RS19000 0.79 -2.5 190,884 + LRK53_RS19000 0.79 +0.4 190,885 - LRK53_RS19000 0.79 -0.1 190,885 - LRK53_RS19000 0.79 -1.3 190,885 - LRK53_RS19000 0.79 -1.1 190,885 - LRK53_RS19000 0.79 -0.4 190,885 - LRK53_RS19000 0.79 -0.7 190,885 - LRK53_RS19000 0.79 -0.1 190,951 + -0.1 190,952 - -0.1 190,952 - +0.1 190,952 - -0.6 191,001 - +0.9 191,038 + -1.1 191,038 + +1.2 191,038 + -0.4 191,038 + -0.7 191,038 + -1.9 191,038 + +0.9 191,038 + -0.1 191,038 + +0.9 191,039 - -0.6 191,039 - -0.7 191,039 - -1.9 191,039 - -2.6 191,039 - +0.3 191,039 - +0.1 191,363 + LRK53_RS19005 0.29 -1.9 191,363 + LRK53_RS19005 0.29 -1.5 191,363 + LRK53_RS19005 0.29 -1.8 191,363 + LRK53_RS19005 0.29 -0.7 191,364 - LRK53_RS19005 0.29 -1.1 191,364 - LRK53_RS19005 0.29 -2.5 191,451 + LRK53_RS19005 0.37 -1.1 191,451 + LRK53_RS19005 0.37 -1.7 191,452 - LRK53_RS19005 0.37 -0.5 191,675 + LRK53_RS19005 0.57 -2.3 191,777 + LRK53_RS19005 0.66 -0.5 191,778 - LRK53_RS19005 0.67 -1.5 191,778 - LRK53_RS19005 0.67 -3.3 191,778 - LRK53_RS19005 0.67 -1.2 191,778 - LRK53_RS19005 0.67 -0.7 192,089 + -1.4 192,090 - -1.0 192,122 + -1.1 192,122 + -0.7 192,122 + -0.7 192,122 + -1.2 192,123 - -1.8 192,123 - -1.9 192,123 - -0.5 192,123 - -1.5 192,123 - -0.5 192,123 - -0.4 192,146 + -0.5 192,146 + -1.6 192,146 + -0.5 192,147 - -1.2 192,147 - -0.1 192,147 - -1.7 192,147 - -1.3 192,149 + -0.2 192,150 - -0.9 192,150 - -1.1 192,150 - +0.3 192,245 + LRK53_RS19010 0.12 -0.9 192,245 + LRK53_RS19010 0.12 -0.8 192,388 + LRK53_RS19010 0.25 -0.3 192,388 + LRK53_RS19010 0.25 -1.1 192,389 - LRK53_RS19010 0.26 -0.5 192,479 + LRK53_RS19010 0.34 +0.3 192,480 - LRK53_RS19010 0.34 +0.9 192,480 - LRK53_RS19010 0.34 -0.7 192,550 + LRK53_RS19010 0.41 -0.6 192,720 + LRK53_RS19010 0.57 -1.5 192,720 + LRK53_RS19010 0.57 -0.7 192,720 + LRK53_RS19010 0.57 -0.7 192,721 - LRK53_RS19010 0.57 -0.7 192,721 - LRK53_RS19010 0.57 -0.5 192,747 + LRK53_RS19010 0.60 -0.6 192,747 + LRK53_RS19010 0.60 +0.4 192,747 + LRK53_RS19010 0.60 -0.9 192,748 - LRK53_RS19010 0.60 -1.3 192,748 - LRK53_RS19010 0.60 -0.4 192,797 + LRK53_RS19010 0.64 -0.1 192,819 - LRK53_RS19010 0.66 -0.9 192,819 - LRK53_RS19010 0.66 -1.7 192,836 + LRK53_RS19010 0.68 -1.1 192,858 - LRK53_RS19010 0.70 +0.3 192,858 - LRK53_RS19010 0.70 +0.3 192,860 + LRK53_RS19010 0.70 +1.3 192,860 + LRK53_RS19010 0.70 -0.6 192,863 + LRK53_RS19010 0.71 +0.9 192,863 + LRK53_RS19010 0.71 -0.7 192,863 + LRK53_RS19010 0.71 -1.5 192,864 - LRK53_RS19010 0.71 -0.4 192,864 - LRK53_RS19010 0.71 -0.9 192,878 + LRK53_RS19010 0.72 +0.2 192,878 + LRK53_RS19010 0.72 -1.5 192,923 + LRK53_RS19010 0.76 +0.9 192,923 + LRK53_RS19010 0.76 +0.4 192,923 + LRK53_RS19010 0.76 -0.8 192,923 + LRK53_RS19010 0.76 -1.1 192,923 + LRK53_RS19010 0.76 -0.1 192,923 + LRK53_RS19010 0.76 +0.9 192,924 - LRK53_RS19010 0.76 -0.1 192,924 - LRK53_RS19010 0.76 -0.9 192,924 - LRK53_RS19010 0.76 -1.5 192,924 - LRK53_RS19010 0.76 -2.0 192,924 - LRK53_RS19010 0.76 +0.9 192,924 - LRK53_RS19010 0.76 +0.1 192,924 - LRK53_RS19010 0.76 -1.7 192,924 - LRK53_RS19010 0.76 +1.9 192,924 - LRK53_RS19010 0.76 -1.6 192,938 + LRK53_RS19010 0.78 -0.1 192,938 + LRK53_RS19010 0.78 -0.9 192,939 - LRK53_RS19010 0.78 -0.6 192,939 - LRK53_RS19010 0.78 +0.9 192,939 - LRK53_RS19010 0.78 -0.1 192,939 - LRK53_RS19010 0.78 -1.3 192,939 - LRK53_RS19010 0.78 +1.9 192,939 - LRK53_RS19010 0.78 +0.9 192,939 - LRK53_RS19010 0.78 -1.0 192,962 - LRK53_RS19010 0.80 -0.7 193,011 - LRK53_RS19010 0.85 +0.0 193,139 + -0.6 193,140 - -0.7
Or see this region's nucleotide sequence