Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18665 and LRK53_RS18670 are separated by 9 nucleotides LRK53_RS18670 and LRK53_RS18675 overlap by 41 nucleotides LRK53_RS18675 and LRK53_RS18680 are separated by 16 nucleotides LRK53_RS18680 and LRK53_RS18685 are separated by 188 nucleotides
LRK53_RS18665: LRK53_RS18665 - hypothetical protein, at 119,475 to 120,146
_RS18665
LRK53_RS18670: LRK53_RS18670 - translesion DNA synthesis-associated protein ImuA, at 120,156 to 120,818
_RS18670
LRK53_RS18675: LRK53_RS18675 - DNA polymerase Y family protein, at 120,778 to 122,163
_RS18675
LRK53_RS18680: LRK53_RS18680 - hypothetical protein, at 122,180 to 122,911
_RS18680
LRK53_RS18685: LRK53_RS18685 - error-prone DNA polymerase, at 123,100 to 126,165
_RS18685
Position (kb)
120
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 119.923 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.923 kb on - strand, within LRK53_RS18665 at 119.961 kb on + strand, within LRK53_RS18665 at 119.961 kb on + strand, within LRK53_RS18665 at 120.314 kb on - strand, within LRK53_RS18670 at 120.314 kb on - strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.316 kb on + strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.317 kb on - strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.727 kb on + strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 120.728 kb on - strand, within LRK53_RS18670 at 121.469 kb on + strand, within LRK53_RS18675 at 121.470 kb on - strand, within LRK53_RS18675 at 121.470 kb on - strand, within LRK53_RS18675 at 121.555 kb on + strand, within LRK53_RS18675 at 121.556 kb on - strand, within LRK53_RS18675 at 122.071 kb on + strand at 122.113 kb on + strand at 122.113 kb on + strand at 122.113 kb on + strand at 122.114 kb on - strand at 122.114 kb on - strand at 122.114 kb on - strand at 122.233 kb on - strand at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.481 kb on + strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.482 kb on - strand, within LRK53_RS18680 at 122.787 kb on + strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.788 kb on - strand, within LRK53_RS18680 at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.857 kb on + strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.858 kb on - strand at 122.902 kb on + strand at 122.903 kb on - strand at 122.986 kb on + strand at 122.986 kb on + strand at 122.986 kb on + strand at 122.986 kb on + strand at 122.986 kb on + strand at 122.986 kb on + strand at 122.987 kb on - strand at 122.987 kb on - strand at 122.987 kb on - strand at 123.060 kb on + strand at 123.060 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.103 kb on + strand at 123.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 119,923 - LRK53_RS18665 0.67 -0.9 119,923 - LRK53_RS18665 0.67 -1.6 119,923 - LRK53_RS18665 0.67 -0.7 119,961 + LRK53_RS18665 0.72 -1.3 119,961 + LRK53_RS18665 0.72 -0.9 120,314 - LRK53_RS18670 0.24 -0.6 120,314 - LRK53_RS18670 0.24 -1.5 120,316 + LRK53_RS18670 0.24 -0.9 120,316 + LRK53_RS18670 0.24 -0.1 120,316 + LRK53_RS18670 0.24 -1.1 120,316 + LRK53_RS18670 0.24 +1.9 120,316 + LRK53_RS18670 0.24 -0.6 120,317 - LRK53_RS18670 0.24 -0.5 120,317 - LRK53_RS18670 0.24 -0.9 120,317 - LRK53_RS18670 0.24 -1.1 120,727 + LRK53_RS18670 0.86 +0.3 120,727 + LRK53_RS18670 0.86 +1.4 120,727 + LRK53_RS18670 0.86 -0.7 120,727 + LRK53_RS18670 0.86 -0.1 120,727 + LRK53_RS18670 0.86 -0.1 120,727 + LRK53_RS18670 0.86 -1.1 120,728 - LRK53_RS18670 0.86 -1.9 120,728 - LRK53_RS18670 0.86 -1.6 120,728 - LRK53_RS18670 0.86 -1.8 121,469 + LRK53_RS18675 0.50 -1.9 121,470 - LRK53_RS18675 0.50 +0.3 121,470 - LRK53_RS18675 0.50 +0.3 121,555 + LRK53_RS18675 0.56 -1.5 121,556 - LRK53_RS18675 0.56 -0.7 122,071 + -0.9 122,113 + -1.5 122,113 + -1.7 122,113 + -1.9 122,114 - -0.4 122,114 - +0.3 122,114 - -1.4 122,233 - +0.9 122,481 + LRK53_RS18680 0.41 -1.5 122,481 + LRK53_RS18680 0.41 -1.9 122,481 + LRK53_RS18680 0.41 -1.1 122,481 + LRK53_RS18680 0.41 +0.9 122,481 + LRK53_RS18680 0.41 -0.1 122,481 + LRK53_RS18680 0.41 -0.1 122,481 + LRK53_RS18680 0.41 -0.4 122,481 + LRK53_RS18680 0.41 -1.1 122,481 + LRK53_RS18680 0.41 -0.8 122,482 - LRK53_RS18680 0.41 +0.3 122,482 - LRK53_RS18680 0.41 -0.3 122,482 - LRK53_RS18680 0.41 -1.0 122,482 - LRK53_RS18680 0.41 -0.9 122,482 - LRK53_RS18680 0.41 -1.7 122,482 - LRK53_RS18680 0.41 -1.6 122,482 - LRK53_RS18680 0.41 -1.1 122,482 - LRK53_RS18680 0.41 -0.1 122,482 - LRK53_RS18680 0.41 -2.8 122,482 - LRK53_RS18680 0.41 +0.3 122,482 - LRK53_RS18680 0.41 +0.1 122,482 - LRK53_RS18680 0.41 +0.1 122,482 - LRK53_RS18680 0.41 +0.3 122,482 - LRK53_RS18680 0.41 -1.5 122,787 + LRK53_RS18680 0.83 -2.5 122,788 - LRK53_RS18680 0.83 +0.5 122,788 - LRK53_RS18680 0.83 -1.0 122,788 - LRK53_RS18680 0.83 -0.7 122,788 - LRK53_RS18680 0.83 -0.6 122,788 - LRK53_RS18680 0.83 -0.9 122,788 - LRK53_RS18680 0.83 -0.3 122,857 + -0.7 122,857 + -1.7 122,857 + +0.4 122,857 + -2.3 122,857 + +0.4 122,857 + -0.4 122,857 + +1.4 122,857 + +1.4 122,858 - -1.3 122,858 - +0.3 122,858 - -0.6 122,858 - -2.6 122,858 - +0.0 122,858 - -1.8 122,858 - -0.1 122,858 - +0.4 122,858 - -1.1 122,902 + -0.7 122,903 - -0.4 122,986 + -1.5 122,986 + -0.1 122,986 + -1.2 122,986 + -0.7 122,986 + -1.3 122,986 + -0.1 122,987 - -3.2 122,987 - +0.4 122,987 - +1.4 123,060 + +0.9 123,060 + -1.1 123,103 + -0.5 123,103 + +0.9 123,103 + -0.9 123,103 + +0.7 123,103 + -1.6 123,103 + +0.5 123,103 + -1.2 123,103 + -1.7 123,103 + -1.9 123,103 + -0.1 123,104 - -0.5
Or see this region's nucleotide sequence