Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18150

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18145 and LRK53_RS18150 are separated by 14 nucleotidesLRK53_RS18150 and LRK53_RS18155 overlap by 4 nucleotides LRK53_RS18145: LRK53_RS18145 - DHHA1 domain-containing protein, at 2,971 to 4,749 _RS18145 LRK53_RS18150: LRK53_RS18150 - hypothetical protein, at 4,764 to 5,423 _RS18150 LRK53_RS18155: LRK53_RS18155 - hypothetical protein, at 5,420 to 6,601 _RS18155 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.844 kb on + strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 3.845 kb on - strand, within LRK53_RS18145at 4.673 kb on - strandat 4.758 kb on + strandat 4.758 kb on + strandat 4.758 kb on + strandat 4.758 kb on + strandat 4.758 kb on + strandat 4.758 kb on + strandat 4.759 kb on - strandat 4.759 kb on - strandat 4.759 kb on - strandat 4.759 kb on - strandat 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.197 kb on + strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.198 kb on - strand, within LRK53_RS18150at 5.421 kb on + strandat 5.421 kb on + strandat 5.421 kb on + strandat 5.421 kb on + strandat 5.421 kb on + strandat 5.422 kb on - strandat 5.422 kb on - strandat 5.422 kb on - strandat 5.425 kb on + strandat 5.425 kb on + strandat 5.425 kb on + strandat 5.426 kb on - strandat 5.426 kb on - strandat 5.426 kb on - strandat 5.426 kb on - strandat 5.426 kb on - strandat 5.426 kb on - strandat 5.622 kb on - strand, within LRK53_RS18155at 5.979 kb on + strand, within LRK53_RS18155at 6.036 kb on - strand, within LRK53_RS18155at 6.179 kb on + strand, within LRK53_RS18155at 6.334 kb on - strand, within LRK53_RS18155

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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3,844 + LRK53_RS18145 0.49 -0.1
3,844 + LRK53_RS18145 0.49 -1.1
3,844 + LRK53_RS18145 0.49 -1.3
3,844 + LRK53_RS18145 0.49 -0.1
3,844 + LRK53_RS18145 0.49 -1.1
3,844 + LRK53_RS18145 0.49 -0.1
3,844 + LRK53_RS18145 0.49 -0.1
3,845 - LRK53_RS18145 0.49 -1.5
3,845 - LRK53_RS18145 0.49 -1.0
3,845 - LRK53_RS18145 0.49 -0.8
3,845 - LRK53_RS18145 0.49 -1.1
3,845 - LRK53_RS18145 0.49 -0.4
3,845 - LRK53_RS18145 0.49 -0.5
3,845 - LRK53_RS18145 0.49 +0.2
3,845 - LRK53_RS18145 0.49 +0.1
3,845 - LRK53_RS18145 0.49 -2.1
3,845 - LRK53_RS18145 0.49 -0.1
3,845 - LRK53_RS18145 0.49 -1.2
3,845 - LRK53_RS18145 0.49 -0.4
4,673 - -0.1
4,758 + -0.9
4,758 + -1.3
4,758 + -0.7
4,758 + +0.6
4,758 + -1.1
4,758 + -1.1
4,759 - -0.7
4,759 - -0.9
4,759 - -1.5
4,759 - -0.7
5,197 + LRK53_RS18150 0.66 -1.9
5,197 + LRK53_RS18150 0.66 -1.1
5,197 + LRK53_RS18150 0.66 -2.6
5,197 + LRK53_RS18150 0.66 +0.9
5,197 + LRK53_RS18150 0.66 -0.3
5,197 + LRK53_RS18150 0.66 -0.1
5,197 + LRK53_RS18150 0.66 -2.0
5,197 + LRK53_RS18150 0.66 -1.0
5,197 + LRK53_RS18150 0.66 -1.5
5,197 + LRK53_RS18150 0.66 -1.3
5,197 + LRK53_RS18150 0.66 -0.7
5,197 + LRK53_RS18150 0.66 -0.7
5,197 + LRK53_RS18150 0.66 -1.9
5,197 + LRK53_RS18150 0.66 -0.9
5,197 + LRK53_RS18150 0.66 -1.0
5,198 - LRK53_RS18150 0.66 -1.6
5,198 - LRK53_RS18150 0.66 -2.1
5,198 - LRK53_RS18150 0.66 -1.3
5,198 - LRK53_RS18150 0.66 -0.1
5,198 - LRK53_RS18150 0.66 +0.1
5,198 - LRK53_RS18150 0.66 -2.5
5,198 - LRK53_RS18150 0.66 -0.9
5,198 - LRK53_RS18150 0.66 -0.1
5,198 - LRK53_RS18150 0.66 -0.5
5,198 - LRK53_RS18150 0.66 -1.5
5,198 - LRK53_RS18150 0.66 +1.4
5,198 - LRK53_RS18150 0.66 -1.5
5,421 + -0.4
5,421 + -1.5
5,421 + -1.0
5,421 + +0.9
5,421 + -0.8
5,422 - -0.1
5,422 - +0.0
5,422 - +0.9
5,425 + -1.3
5,425 + +0.1
5,425 + -0.1
5,426 - -0.1
5,426 - -0.7
5,426 - -0.1
5,426 - +0.2
5,426 - -0.2
5,426 - -2.0
5,622 - LRK53_RS18155 0.17 +0.9
5,979 + LRK53_RS18155 0.47 -1.3
6,036 - LRK53_RS18155 0.52 -0.5
6,179 + LRK53_RS18155 0.64 -1.7
6,334 - LRK53_RS18155 0.77 +0.4

Or see this region's nucleotide sequence