Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18120 and LRK53_RS18125 are separated by 73 nucleotides LRK53_RS18125 and LRK53_RS18130 are separated by 101 nucleotides
LRK53_RS18120: LRK53_RS18120 - energy transducer TonB, at 1 to 642
_RS18120
LRK53_RS18125: LRK53_RS18125 - hypothetical protein, at 716 to 1,069
_RS18125
LRK53_RS18130: LRK53_RS18130 - lytic transglycosylase domain-containing protein, at 1,171 to 1,815
_RS18130
Position (kb) 0
1 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 0.015 kb on + strand at 0.015 kb on + strand at 0.064 kb on + strand at 0.064 kb on + strand at 0.064 kb on + strand at 0.064 kb on + strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.216 kb on + strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.353 kb on - strand, within LRK53_RS18120 at 0.582 kb on - strand at 0.762 kb on - strand, within LRK53_RS18125 at 1.127 kb on - strand at 1.153 kb on - strand at 1.153 kb on - strand at 1.153 kb on - strand at 1.183 kb on - strand at 1.183 kb on - strand at 1.183 kb on - strand at 1.245 kb on - strand, within LRK53_RS18130 at 1.276 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.549 kb on + strand, within LRK53_RS18130 at 1.549 kb on + strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 15 + -0.8 15 + +0.1 64 + -0.5 64 + -1.5 64 + -3.0 64 + -0.1 65 - -0.4 65 - +0.1 65 - -1.7 65 - -1.0 65 - -1.7 65 - -1.7 65 - -1.1 216 + LRK53_RS18120 0.33 -0.7 217 - LRK53_RS18120 0.34 -0.1 217 - LRK53_RS18120 0.34 -3.0 217 - LRK53_RS18120 0.34 -0.9 353 - LRK53_RS18120 0.55 -1.1 582 - -1.3 762 - LRK53_RS18125 0.13 -0.4 1,127 - +0.1 1,153 - -1.2 1,153 - +0.9 1,153 - -1.0 1,183 - -0.4 1,183 - -0.8 1,183 - +0.9 1,245 - LRK53_RS18130 0.11 +0.3 1,276 - LRK53_RS18130 0.16 -1.0 1,484 - LRK53_RS18130 0.49 -0.3 1,484 - LRK53_RS18130 0.49 +0.1 1,484 - LRK53_RS18130 0.49 -1.5 1,549 + LRK53_RS18130 0.59 -1.1 1,549 + LRK53_RS18130 0.59 -0.6 1,550 - LRK53_RS18130 0.59 -0.7 1,550 - LRK53_RS18130 0.59 -0.5 1,550 - LRK53_RS18130 0.59 -0.9
Or see this region's nucleotide sequence