Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16120 and LRK53_RS16125 are separated by 98 nucleotides LRK53_RS16125 and LRK53_RS16130 are separated by 67 nucleotides LRK53_RS16130 and LRK53_RS16135 are separated by 57 nucleotides
LRK53_RS16120: LRK53_RS16120 - LPS export ABC transporter permease LptF, at 3,543,568 to 3,544,683
_RS16120
LRK53_RS16125: LRK53_RS16125 - leucyl aminopeptidase, at 3,544,782 to 3,546,269
_RS16125
LRK53_RS16130: LRK53_RS16130 - DNA polymerase III subunit chi, at 3,546,337 to 3,546,756
_RS16130
LRK53_RS16135: LRK53_RS16135 - hybrid sensor histidine kinase/response regulator, at 3,546,814 to 3,550,395
_RS16135
Position (kb)
3544
3545
3546
3547 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3544.689 kb on - strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.119 kb on - strand, within LRK53_RS16125 at 3545.199 kb on + strand, within LRK53_RS16125 at 3545.205 kb on + strand, within LRK53_RS16125 at 3545.205 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.380 kb on - strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.336 kb on + strand at 3546.336 kb on + strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.973 kb on + strand at 3546.974 kb on - strand at 3547.194 kb on - strand, within LRK53_RS16135
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 3,544,689 - +0.5 3,544,739 + -0.5 3,544,739 + +0.1 3,544,739 + +1.1 3,544,739 + +1.5 3,544,739 + -0.5 3,544,740 - -1.3 3,544,740 - -1.7 3,544,740 - -0.1 3,544,740 - -1.1 3,544,740 - -1.5 3,544,740 - -0.5 3,544,740 - -0.6 3,544,854 + +1.1 3,544,854 + -1.7 3,544,854 + +0.3 3,544,854 + +1.7 3,544,854 + +1.1 3,545,118 + LRK53_RS16125 0.23 -1.2 3,545,118 + LRK53_RS16125 0.23 +0.1 3,545,118 + LRK53_RS16125 0.23 -0.8 3,545,118 + LRK53_RS16125 0.23 -0.6 3,545,118 + LRK53_RS16125 0.23 -2.5 3,545,118 + LRK53_RS16125 0.23 -1.1 3,545,118 + LRK53_RS16125 0.23 -1.3 3,545,118 + LRK53_RS16125 0.23 -2.1 3,545,118 + LRK53_RS16125 0.23 -0.2 3,545,118 + LRK53_RS16125 0.23 +0.6 3,545,118 + LRK53_RS16125 0.23 -0.9 3,545,119 - LRK53_RS16125 0.23 +0.1 3,545,199 + LRK53_RS16125 0.28 +1.1 3,545,205 + LRK53_RS16125 0.28 -1.6 3,545,205 + LRK53_RS16125 0.28 +1.1 3,545,379 + LRK53_RS16125 0.40 -0.3 3,545,379 + LRK53_RS16125 0.40 -0.5 3,545,379 + LRK53_RS16125 0.40 +0.1 3,545,379 + LRK53_RS16125 0.40 +1.1 3,545,379 + LRK53_RS16125 0.40 -0.9 3,545,379 + LRK53_RS16125 0.40 -0.3 3,545,379 + LRK53_RS16125 0.40 -1.5 3,545,379 + LRK53_RS16125 0.40 -0.9 3,545,379 + LRK53_RS16125 0.40 -0.9 3,545,379 + LRK53_RS16125 0.40 -0.5 3,545,379 + LRK53_RS16125 0.40 +0.5 3,545,380 - LRK53_RS16125 0.40 -0.5 3,545,532 + LRK53_RS16125 0.50 -0.9 3,545,532 + LRK53_RS16125 0.50 -1.0 3,545,532 + LRK53_RS16125 0.50 -0.6 3,545,532 + LRK53_RS16125 0.50 -0.4 3,545,532 + LRK53_RS16125 0.50 +0.1 3,545,532 + LRK53_RS16125 0.50 -2.1 3,545,532 + LRK53_RS16125 0.50 -0.8 3,545,532 + LRK53_RS16125 0.50 -0.5 3,545,532 + LRK53_RS16125 0.50 -0.9 3,545,532 + LRK53_RS16125 0.50 -0.7 3,545,532 + LRK53_RS16125 0.50 -1.9 3,545,532 + LRK53_RS16125 0.50 +0.1 3,545,532 + LRK53_RS16125 0.50 -1.1 3,545,532 + LRK53_RS16125 0.50 +0.1 3,545,532 + LRK53_RS16125 0.50 -1.8 3,545,532 + LRK53_RS16125 0.50 -0.5 3,545,532 + LRK53_RS16125 0.50 +1.5 3,545,532 + LRK53_RS16125 0.50 -1.7 3,545,532 + LRK53_RS16125 0.50 +1.1 3,545,533 - LRK53_RS16125 0.50 +1.1 3,545,533 - LRK53_RS16125 0.50 +1.1 3,545,533 - LRK53_RS16125 0.50 -1.7 3,545,533 - LRK53_RS16125 0.50 +0.1 3,545,763 + LRK53_RS16125 0.66 -1.1 3,545,763 + LRK53_RS16125 0.66 -3.0 3,545,763 + LRK53_RS16125 0.66 +0.5 3,545,763 + LRK53_RS16125 0.66 -1.6 3,545,763 + LRK53_RS16125 0.66 -0.3 3,545,763 + LRK53_RS16125 0.66 -2.4 3,545,763 + LRK53_RS16125 0.66 -1.7 3,545,764 - LRK53_RS16125 0.66 -0.3 3,545,764 - LRK53_RS16125 0.66 -0.7 3,545,764 - LRK53_RS16125 0.66 -0.8 3,545,862 + LRK53_RS16125 0.73 -1.3 3,545,862 + LRK53_RS16125 0.73 -2.0 3,545,862 + LRK53_RS16125 0.73 +0.1 3,545,862 + LRK53_RS16125 0.73 -1.0 3,545,862 + LRK53_RS16125 0.73 -0.2 3,545,862 + LRK53_RS16125 0.73 -0.5 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,862 + LRK53_RS16125 0.73 -1.5 3,545,862 + LRK53_RS16125 0.73 -1.3 3,545,862 + LRK53_RS16125 0.73 +0.1 3,545,862 + LRK53_RS16125 0.73 -1.5 3,545,862 + LRK53_RS16125 0.73 -0.2 3,545,862 + LRK53_RS16125 0.73 -2.2 3,545,862 + LRK53_RS16125 0.73 -1.3 3,545,862 + LRK53_RS16125 0.73 -1.4 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -0.9 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -3.8 3,545,862 + LRK53_RS16125 0.73 +1.1 3,545,862 + LRK53_RS16125 0.73 -1.1 3,545,862 + LRK53_RS16125 0.73 +0.5 3,545,862 + LRK53_RS16125 0.73 -1.3 3,545,862 + LRK53_RS16125 0.73 -0.2 3,545,862 + LRK53_RS16125 0.73 -0.3 3,545,862 + LRK53_RS16125 0.73 +0.5 3,545,862 + LRK53_RS16125 0.73 -1.2 3,545,862 + LRK53_RS16125 0.73 -0.3 3,545,862 + LRK53_RS16125 0.73 -1.6 3,545,862 + LRK53_RS16125 0.73 -1.1 3,545,862 + LRK53_RS16125 0.73 -0.5 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 +0.1 3,545,862 + LRK53_RS16125 0.73 -0.9 3,545,862 + LRK53_RS16125 0.73 -1.0 3,545,862 + LRK53_RS16125 0.73 -1.7 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,862 + LRK53_RS16125 0.73 -0.2 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,863 - LRK53_RS16125 0.73 -1.6 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -1.8 3,545,863 - LRK53_RS16125 0.73 -1.2 3,545,863 - LRK53_RS16125 0.73 -1.1 3,545,863 - LRK53_RS16125 0.73 -0.2 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -1.2 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 +1.1 3,545,863 - LRK53_RS16125 0.73 -1.1 3,545,863 - LRK53_RS16125 0.73 -0.3 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.3 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -0.2 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -0.1 3,545,863 - LRK53_RS16125 0.73 -1.1 3,545,863 - LRK53_RS16125 0.73 -1.7 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -1.9 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 +0.1 3,545,863 - LRK53_RS16125 0.73 +0.7 3,545,863 - LRK53_RS16125 0.73 +1.1 3,545,863 - LRK53_RS16125 0.73 -1.1 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,864 + LRK53_RS16125 0.73 -1.4 3,545,864 + LRK53_RS16125 0.73 +0.1 3,545,864 + LRK53_RS16125 0.73 -2.6 3,545,865 - LRK53_RS16125 0.73 +1.1 3,545,865 - LRK53_RS16125 0.73 -2.3 3,545,865 - LRK53_RS16125 0.73 -1.7 3,545,865 - LRK53_RS16125 0.73 -2.0 3,546,048 + LRK53_RS16125 0.85 -0.3 3,546,048 + LRK53_RS16125 0.85 -0.5 3,546,048 + LRK53_RS16125 0.85 +0.5 3,546,048 + LRK53_RS16125 0.85 +0.7 3,546,048 + LRK53_RS16125 0.85 +0.1 3,546,049 - LRK53_RS16125 0.85 +0.5 3,546,049 - LRK53_RS16125 0.85 -0.9 3,546,049 - LRK53_RS16125 0.85 +0.1 3,546,049 - LRK53_RS16125 0.85 -2.1 3,546,281 + -0.8 3,546,281 + -1.8 3,546,281 + -2.5 3,546,281 + -1.1 3,546,281 + +1.1 3,546,281 + +1.1 3,546,281 + +0.1 3,546,281 + +2.1 3,546,281 + -1.4 3,546,281 + -0.5 3,546,281 + -1.7 3,546,281 + +0.5 3,546,282 - +0.9 3,546,282 - +0.1 3,546,282 - -1.1 3,546,282 - +1.1 3,546,282 - +1.1 3,546,282 - +0.1 3,546,282 - +0.7 3,546,282 - -0.3 3,546,282 - -0.3 3,546,282 - -0.4 3,546,282 - -2.1 3,546,282 - -0.6 3,546,282 - -0.8 3,546,282 - -0.5 3,546,336 + -1.0 3,546,336 + +0.1 3,546,337 - -0.2 3,546,337 - -0.1 3,546,337 - -2.5 3,546,337 - -2.6 3,546,337 - +0.8 3,546,337 - +1.1 3,546,973 + +0.1 3,546,974 - -1.5 3,547,194 - LRK53_RS16135 0.11 -0.9
Or see this region's nucleotide sequence