Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14885 and LRK53_RS14890 are separated by 210 nucleotides LRK53_RS14890 and LRK53_RS14895 are separated by 85 nucleotides LRK53_RS14895 and LRK53_RS14900 are separated by 10 nucleotides LRK53_RS14900 and LRK53_RS14905 are separated by 17 nucleotides
LRK53_RS14885: LRK53_RS14885 - hypothetical protein, at 3,257,418 to 3,257,780
_RS14885
LRK53_RS14890: LRK53_RS14890 - hypothetical protein, at 3,257,991 to 3,258,341
_RS14890
LRK53_RS14895: LRK53_RS14895 - STAS domain-containing protein, at 3,258,427 to 3,258,726
_RS14895
LRK53_RS14900: LRK53_RS14900 - methyl-accepting chemotaxis protein, at 3,258,737 to 3,259,915
_RS14900
LRK53_RS14905: LRK53_RS14905 - chemotaxis response regulator protein-glutamate methylesterase, at 3,259,933 to 3,261,024
_RS14905
Position (kb) 3258
3259
3260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.802 kb on + strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3257.803 kb on - strand at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.306 kb on + strand, within LRK53_RS14890 at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.307 kb on - strand at 3258.342 kb on + strand at 3258.342 kb on + strand at 3258.342 kb on + strand at 3258.342 kb on + strand at 3258.343 kb on - strand at 3258.343 kb on - strand at 3258.343 kb on - strand at 3258.602 kb on + strand, within LRK53_RS14895 at 3258.602 kb on + strand, within LRK53_RS14895 at 3258.603 kb on - strand, within LRK53_RS14895 at 3258.603 kb on - strand, within LRK53_RS14895 at 3258.603 kb on - strand, within LRK53_RS14895 at 3258.603 kb on - strand, within LRK53_RS14895 at 3258.603 kb on - strand, within LRK53_RS14895 at 3259.357 kb on + strand, within LRK53_RS14900 at 3259.357 kb on + strand, within LRK53_RS14900 at 3259.357 kb on + strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.358 kb on - strand, within LRK53_RS14900 at 3259.923 kb on + strand at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.261 kb on + strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.262 kb on - strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.312 kb on + strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.313 kb on - strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.416 kb on + strand, within LRK53_RS14905 at 3260.417 kb on - strand, within LRK53_RS14905 at 3260.417 kb on - strand, within LRK53_RS14905 at 3260.417 kb on - strand, within LRK53_RS14905 at 3260.417 kb on - strand, within LRK53_RS14905
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 3,257,802 + -0.6 3,257,802 + -0.3 3,257,802 + +0.6 3,257,802 + +0.2 3,257,802 + -0.6 3,257,802 + -2.3 3,257,802 + -0.6 3,257,802 + -0.6 3,257,802 + -1.4 3,257,802 + -1.0 3,257,802 + +2.0 3,257,802 + +0.7 3,257,802 + -1.0 3,257,802 + -1.0 3,257,802 + +2.0 3,257,802 + -0.6 3,257,802 + +2.0 3,257,802 + -1.8 3,257,802 + -0.8 3,257,803 - -2.1 3,257,803 - -0.5 3,257,803 - -0.8 3,257,803 - -2.0 3,257,803 - -1.3 3,257,803 - +2.0 3,257,803 - -0.0 3,257,803 - -1.8 3,257,803 - +0.4 3,257,803 - -0.0 3,257,803 - +0.5 3,257,803 - -0.0 3,257,803 - -2.6 3,257,803 - +1.0 3,257,803 - -1.3 3,257,803 - -0.8 3,257,803 - +0.2 3,257,803 - -0.2 3,257,803 - -1.1 3,257,803 - -0.0 3,257,803 - -2.0 3,257,803 - -0.0 3,257,803 - -0.5 3,257,803 - -1.6 3,258,306 + LRK53_RS14890 0.90 +1.0 3,258,306 + LRK53_RS14890 0.90 -0.6 3,258,306 + LRK53_RS14890 0.90 +1.0 3,258,306 + LRK53_RS14890 0.90 +0.2 3,258,306 + LRK53_RS14890 0.90 -0.3 3,258,306 + LRK53_RS14890 0.90 -1.1 3,258,306 + LRK53_RS14890 0.90 -0.6 3,258,306 + LRK53_RS14890 0.90 -0.6 3,258,306 + LRK53_RS14890 0.90 -0.8 3,258,306 + LRK53_RS14890 0.90 -1.6 3,258,306 + LRK53_RS14890 0.90 -0.0 3,258,307 - -0.9 3,258,307 - +0.4 3,258,307 - +2.3 3,258,307 - -0.6 3,258,307 - -1.0 3,258,307 - +0.3 3,258,307 - -0.6 3,258,307 - +1.0 3,258,307 - +0.4 3,258,307 - +1.6 3,258,307 - -0.6 3,258,307 - -0.8 3,258,307 - +0.3 3,258,307 - -0.0 3,258,307 - -2.1 3,258,307 - -1.0 3,258,307 - -0.4 3,258,307 - -1.0 3,258,307 - -1.0 3,258,342 + -1.1 3,258,342 + +2.0 3,258,342 + +0.6 3,258,342 + -0.6 3,258,343 - -0.6 3,258,343 - -0.0 3,258,343 - -1.0 3,258,602 + LRK53_RS14895 0.58 +1.0 3,258,602 + LRK53_RS14895 0.58 +1.0 3,258,603 - LRK53_RS14895 0.59 -2.3 3,258,603 - LRK53_RS14895 0.59 -1.0 3,258,603 - LRK53_RS14895 0.59 +1.0 3,258,603 - LRK53_RS14895 0.59 +1.0 3,258,603 - LRK53_RS14895 0.59 -0.4 3,259,357 + LRK53_RS14900 0.53 -0.2 3,259,357 + LRK53_RS14900 0.53 -2.6 3,259,357 + LRK53_RS14900 0.53 -2.2 3,259,358 - LRK53_RS14900 0.53 -3.1 3,259,358 - LRK53_RS14900 0.53 -2.5 3,259,358 - LRK53_RS14900 0.53 -0.6 3,259,358 - LRK53_RS14900 0.53 -1.6 3,259,358 - LRK53_RS14900 0.53 -1.6 3,259,358 - LRK53_RS14900 0.53 -0.5 3,259,923 + -0.9 3,260,261 + LRK53_RS14905 0.30 +1.0 3,260,261 + LRK53_RS14905 0.30 +0.2 3,260,261 + LRK53_RS14905 0.30 +2.0 3,260,261 + LRK53_RS14905 0.30 -2.2 3,260,261 + LRK53_RS14905 0.30 +2.0 3,260,261 + LRK53_RS14905 0.30 -0.6 3,260,261 + LRK53_RS14905 0.30 -0.5 3,260,261 + LRK53_RS14905 0.30 -1.3 3,260,262 - LRK53_RS14905 0.30 -0.0 3,260,262 - LRK53_RS14905 0.30 -1.0 3,260,262 - LRK53_RS14905 0.30 -0.9 3,260,262 - LRK53_RS14905 0.30 +1.0 3,260,262 - LRK53_RS14905 0.30 -0.6 3,260,262 - LRK53_RS14905 0.30 -0.0 3,260,262 - LRK53_RS14905 0.30 +0.4 3,260,262 - LRK53_RS14905 0.30 -1.6 3,260,262 - LRK53_RS14905 0.30 +2.6 3,260,262 - LRK53_RS14905 0.30 -0.3 3,260,312 + LRK53_RS14905 0.35 -0.0 3,260,312 + LRK53_RS14905 0.35 -1.0 3,260,312 + LRK53_RS14905 0.35 +0.4 3,260,312 + LRK53_RS14905 0.35 +0.4 3,260,312 + LRK53_RS14905 0.35 -0.2 3,260,312 + LRK53_RS14905 0.35 -0.2 3,260,312 + LRK53_RS14905 0.35 -0.3 3,260,312 + LRK53_RS14905 0.35 -2.8 3,260,312 + LRK53_RS14905 0.35 -0.0 3,260,312 + LRK53_RS14905 0.35 +0.7 3,260,312 + LRK53_RS14905 0.35 -0.9 3,260,312 + LRK53_RS14905 0.35 -0.9 3,260,312 + LRK53_RS14905 0.35 +1.0 3,260,312 + LRK53_RS14905 0.35 -0.7 3,260,312 + LRK53_RS14905 0.35 -1.0 3,260,312 + LRK53_RS14905 0.35 +1.0 3,260,312 + LRK53_RS14905 0.35 +0.2 3,260,312 + LRK53_RS14905 0.35 -2.5 3,260,312 + LRK53_RS14905 0.35 -0.6 3,260,312 + LRK53_RS14905 0.35 -1.2 3,260,313 - LRK53_RS14905 0.35 +1.0 3,260,313 - LRK53_RS14905 0.35 -0.6 3,260,313 - LRK53_RS14905 0.35 -0.0 3,260,313 - LRK53_RS14905 0.35 -1.6 3,260,313 - LRK53_RS14905 0.35 -0.6 3,260,313 - LRK53_RS14905 0.35 -1.0 3,260,313 - LRK53_RS14905 0.35 +1.0 3,260,313 - LRK53_RS14905 0.35 +0.4 3,260,313 - LRK53_RS14905 0.35 +0.4 3,260,313 - LRK53_RS14905 0.35 +0.4 3,260,313 - LRK53_RS14905 0.35 +0.2 3,260,313 - LRK53_RS14905 0.35 -0.6 3,260,313 - LRK53_RS14905 0.35 -0.0 3,260,313 - LRK53_RS14905 0.35 -0.3 3,260,313 - LRK53_RS14905 0.35 +1.0 3,260,416 + LRK53_RS14905 0.44 -0.3 3,260,416 + LRK53_RS14905 0.44 -0.0 3,260,416 + LRK53_RS14905 0.44 -1.3 3,260,416 + LRK53_RS14905 0.44 -1.5 3,260,416 + LRK53_RS14905 0.44 -1.1 3,260,416 + LRK53_RS14905 0.44 -0.0 3,260,416 + LRK53_RS14905 0.44 -0.6 3,260,417 - LRK53_RS14905 0.44 -0.4 3,260,417 - LRK53_RS14905 0.44 -0.0 3,260,417 - LRK53_RS14905 0.44 +1.0 3,260,417 - LRK53_RS14905 0.44 -0.0
Or see this region's nucleotide sequence