Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10775

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS10770 and LRK53_RS10775 are separated by 138 nucleotidesLRK53_RS10775 and LRK53_RS10780 are separated by 221 nucleotides LRK53_RS10770: LRK53_RS10770 - hypothetical protein, at 2,406,334 to 2,406,993 _RS10770 LRK53_RS10775: LRK53_RS10775 - hypothetical protein, at 2,407,132 to 2,407,485 _RS10775 LRK53_RS10780: LRK53_RS10780 - DNA-binding protein, at 2,407,707 to 2,408,639 _RS10780 Position (kb) 2407 2408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2406.159 kb on + strandat 2406.159 kb on + strandat 2406.159 kb on + strandat 2406.160 kb on - strandat 2406.160 kb on - strandat 2406.160 kb on - strandat 2406.160 kb on - strandat 2406.195 kb on + strandat 2406.195 kb on + strandat 2406.196 kb on - strandat 2406.196 kb on - strandat 2406.196 kb on - strandat 2406.196 kb on - strandat 2406.196 kb on - strandat 2406.196 kb on - strandat 2406.242 kb on - strandat 2406.242 kb on - strandat 2406.242 kb on - strandat 2406.242 kb on - strandat 2406.242 kb on - strandat 2406.242 kb on - strandat 2406.248 kb on - strandat 2406.248 kb on - strandat 2406.248 kb on - strandat 2406.267 kb on + strandat 2406.267 kb on + strandat 2406.267 kb on + strandat 2406.267 kb on + strandat 2406.267 kb on + strandat 2406.268 kb on - strandat 2406.268 kb on - strandat 2406.268 kb on - strandat 2406.268 kb on - strandat 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.448 kb on + strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.449 kb on - strand, within LRK53_RS10770at 2406.505 kb on + strand, within LRK53_RS10770at 2406.505 kb on + strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.506 kb on - strand, within LRK53_RS10770at 2406.580 kb on + strand, within LRK53_RS10770at 2406.580 kb on + strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.581 kb on - strand, within LRK53_RS10770at 2406.899 kb on + strand, within LRK53_RS10770at 2406.900 kb on - strand, within LRK53_RS10770at 2406.918 kb on - strand, within LRK53_RS10770at 2406.918 kb on - strand, within LRK53_RS10770at 2407.028 kb on - strandat 2407.028 kb on - strandat 2407.126 kb on + strandat 2407.126 kb on + strandat 2407.298 kb on + strand, within LRK53_RS10775at 2407.298 kb on + strand, within LRK53_RS10775at 2407.299 kb on - strand, within LRK53_RS10775at 2407.441 kb on + strand, within LRK53_RS10775at 2407.442 kb on - strand, within LRK53_RS10775at 2407.490 kb on + strandat 2407.490 kb on + strandat 2407.490 kb on + strandat 2407.490 kb on + strandat 2407.490 kb on + strandat 2407.490 kb on + strandat 2407.491 kb on - strandat 2407.491 kb on - strandat 2407.491 kb on - strandat 2407.491 kb on - strandat 2407.530 kb on + strandat 2407.530 kb on + strandat 2407.530 kb on + strandat 2407.530 kb on + strandat 2407.531 kb on - strandat 2407.531 kb on - strandat 2407.531 kb on - strandat 2407.561 kb on + strandat 2407.561 kb on + strandat 2407.561 kb on + strandat 2407.562 kb on - strandat 2407.778 kb on + strandat 2407.785 kb on + strandat 2407.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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2,406,159 + -0.6
2,406,159 + +0.9
2,406,159 + +1.9
2,406,160 - -1.1
2,406,160 - -0.1
2,406,160 - -2.7
2,406,160 - +0.2
2,406,195 + -1.3
2,406,195 + -2.9
2,406,196 - -1.1
2,406,196 - -2.6
2,406,196 - +0.2
2,406,196 - -0.2
2,406,196 - -0.7
2,406,196 - +0.3
2,406,242 - -2.3
2,406,242 - +0.5
2,406,242 - +0.9
2,406,242 - -0.1
2,406,242 - -1.1
2,406,242 - +0.2
2,406,248 - -0.5
2,406,248 - +0.6
2,406,248 - -0.5
2,406,267 + +0.9
2,406,267 + +0.3
2,406,267 + +0.9
2,406,267 + -1.5
2,406,267 + -0.4
2,406,268 - -1.6
2,406,268 - -1.8
2,406,268 - -1.5
2,406,268 - -1.7
2,406,448 + LRK53_RS10770 0.17 -1.3
2,406,448 + LRK53_RS10770 0.17 -1.5
2,406,448 + LRK53_RS10770 0.17 -1.4
2,406,448 + LRK53_RS10770 0.17 -1.2
2,406,448 + LRK53_RS10770 0.17 +0.7
2,406,448 + LRK53_RS10770 0.17 -2.7
2,406,448 + LRK53_RS10770 0.17 -0.9
2,406,449 - LRK53_RS10770 0.17 -0.1
2,406,449 - LRK53_RS10770 0.17 +0.2
2,406,449 - LRK53_RS10770 0.17 -1.1
2,406,449 - LRK53_RS10770 0.17 -1.3
2,406,449 - LRK53_RS10770 0.17 -1.4
2,406,449 - LRK53_RS10770 0.17 +0.9
2,406,449 - LRK53_RS10770 0.17 -1.1
2,406,449 - LRK53_RS10770 0.17 -0.8
2,406,449 - LRK53_RS10770 0.17 -2.3
2,406,505 + LRK53_RS10770 0.26 -1.1
2,406,505 + LRK53_RS10770 0.26 -1.0
2,406,506 - LRK53_RS10770 0.26 -0.1
2,406,506 - LRK53_RS10770 0.26 -0.3
2,406,506 - LRK53_RS10770 0.26 -1.2
2,406,506 - LRK53_RS10770 0.26 -1.7
2,406,506 - LRK53_RS10770 0.26 +0.9
2,406,506 - LRK53_RS10770 0.26 -1.5
2,406,580 + LRK53_RS10770 0.37 -0.7
2,406,580 + LRK53_RS10770 0.37 -0.8
2,406,581 - LRK53_RS10770 0.37 -0.9
2,406,581 - LRK53_RS10770 0.37 -1.1
2,406,581 - LRK53_RS10770 0.37 +0.4
2,406,581 - LRK53_RS10770 0.37 -0.4
2,406,581 - LRK53_RS10770 0.37 +0.9
2,406,581 - LRK53_RS10770 0.37 -1.1
2,406,581 - LRK53_RS10770 0.37 -0.7
2,406,899 + LRK53_RS10770 0.86 -0.0
2,406,900 - LRK53_RS10770 0.86 -1.4
2,406,918 - LRK53_RS10770 0.88 -1.4
2,406,918 - LRK53_RS10770 0.88 -0.9
2,407,028 - -1.1
2,407,028 - -0.1
2,407,126 + -0.7
2,407,126 + -0.9
2,407,298 + LRK53_RS10775 0.47 +0.9
2,407,298 + LRK53_RS10775 0.47 -1.4
2,407,299 - LRK53_RS10775 0.47 -1.6
2,407,441 + LRK53_RS10775 0.87 -2.1
2,407,442 - LRK53_RS10775 0.88 -2.6
2,407,490 + +1.9
2,407,490 + -0.1
2,407,490 + +0.2
2,407,490 + -0.1
2,407,490 + +0.6
2,407,490 + -0.1
2,407,491 - -0.7
2,407,491 - +0.9
2,407,491 - -2.1
2,407,491 - -2.4
2,407,530 + -0.9
2,407,530 + -1.8
2,407,530 + -0.3
2,407,530 + -1.5
2,407,531 - -0.7
2,407,531 - +0.9
2,407,531 - -0.1
2,407,561 + -2.4
2,407,561 + +0.9
2,407,561 + -1.3
2,407,562 - +0.3
2,407,778 + +0.9
2,407,785 + -0.9
2,407,785 + -0.4

Or see this region's nucleotide sequence