Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10770 and LRK53_RS10775 are separated by 138 nucleotides LRK53_RS10775 and LRK53_RS10780 are separated by 221 nucleotides
LRK53_RS10770: LRK53_RS10770 - hypothetical protein, at 2,406,334 to 2,406,993
_RS10770
LRK53_RS10775: LRK53_RS10775 - hypothetical protein, at 2,407,132 to 2,407,485
_RS10775
LRK53_RS10780: LRK53_RS10780 - DNA-binding protein, at 2,407,707 to 2,408,639
_RS10780
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2406.159 kb on + strand at 2406.159 kb on + strand at 2406.159 kb on + strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.195 kb on + strand at 2406.195 kb on + strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.248 kb on - strand at 2406.248 kb on - strand at 2406.248 kb on - strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.505 kb on + strand, within LRK53_RS10770 at 2406.505 kb on + strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.580 kb on + strand, within LRK53_RS10770 at 2406.580 kb on + strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.899 kb on + strand, within LRK53_RS10770 at 2406.900 kb on - strand, within LRK53_RS10770 at 2406.918 kb on - strand, within LRK53_RS10770 at 2406.918 kb on - strand, within LRK53_RS10770 at 2407.028 kb on - strand at 2407.028 kb on - strand at 2407.126 kb on + strand at 2407.126 kb on + strand at 2407.298 kb on + strand, within LRK53_RS10775 at 2407.298 kb on + strand, within LRK53_RS10775 at 2407.299 kb on - strand, within LRK53_RS10775 at 2407.441 kb on + strand, within LRK53_RS10775 at 2407.442 kb on - strand, within LRK53_RS10775 at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.531 kb on - strand at 2407.531 kb on - strand at 2407.531 kb on - strand at 2407.561 kb on + strand at 2407.561 kb on + strand at 2407.561 kb on + strand at 2407.562 kb on - strand at 2407.778 kb on + strand at 2407.785 kb on + strand at 2407.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 2,406,159 + -0.6 2,406,159 + +0.9 2,406,159 + +1.9 2,406,160 - -1.1 2,406,160 - -0.1 2,406,160 - -2.7 2,406,160 - +0.2 2,406,195 + -1.3 2,406,195 + -2.9 2,406,196 - -1.1 2,406,196 - -2.6 2,406,196 - +0.2 2,406,196 - -0.2 2,406,196 - -0.7 2,406,196 - +0.3 2,406,242 - -2.3 2,406,242 - +0.5 2,406,242 - +0.9 2,406,242 - -0.1 2,406,242 - -1.1 2,406,242 - +0.2 2,406,248 - -0.5 2,406,248 - +0.6 2,406,248 - -0.5 2,406,267 + +0.9 2,406,267 + +0.3 2,406,267 + +0.9 2,406,267 + -1.5 2,406,267 + -0.4 2,406,268 - -1.6 2,406,268 - -1.8 2,406,268 - -1.5 2,406,268 - -1.7 2,406,448 + LRK53_RS10770 0.17 -1.3 2,406,448 + LRK53_RS10770 0.17 -1.5 2,406,448 + LRK53_RS10770 0.17 -1.4 2,406,448 + LRK53_RS10770 0.17 -1.2 2,406,448 + LRK53_RS10770 0.17 +0.7 2,406,448 + LRK53_RS10770 0.17 -2.7 2,406,448 + LRK53_RS10770 0.17 -0.9 2,406,449 - LRK53_RS10770 0.17 -0.1 2,406,449 - LRK53_RS10770 0.17 +0.2 2,406,449 - LRK53_RS10770 0.17 -1.1 2,406,449 - LRK53_RS10770 0.17 -1.3 2,406,449 - LRK53_RS10770 0.17 -1.4 2,406,449 - LRK53_RS10770 0.17 +0.9 2,406,449 - LRK53_RS10770 0.17 -1.1 2,406,449 - LRK53_RS10770 0.17 -0.8 2,406,449 - LRK53_RS10770 0.17 -2.3 2,406,505 + LRK53_RS10770 0.26 -1.1 2,406,505 + LRK53_RS10770 0.26 -1.0 2,406,506 - LRK53_RS10770 0.26 -0.1 2,406,506 - LRK53_RS10770 0.26 -0.3 2,406,506 - LRK53_RS10770 0.26 -1.2 2,406,506 - LRK53_RS10770 0.26 -1.7 2,406,506 - LRK53_RS10770 0.26 +0.9 2,406,506 - LRK53_RS10770 0.26 -1.5 2,406,580 + LRK53_RS10770 0.37 -0.7 2,406,580 + LRK53_RS10770 0.37 -0.8 2,406,581 - LRK53_RS10770 0.37 -0.9 2,406,581 - LRK53_RS10770 0.37 -1.1 2,406,581 - LRK53_RS10770 0.37 +0.4 2,406,581 - LRK53_RS10770 0.37 -0.4 2,406,581 - LRK53_RS10770 0.37 +0.9 2,406,581 - LRK53_RS10770 0.37 -1.1 2,406,581 - LRK53_RS10770 0.37 -0.7 2,406,899 + LRK53_RS10770 0.86 -0.0 2,406,900 - LRK53_RS10770 0.86 -1.4 2,406,918 - LRK53_RS10770 0.88 -1.4 2,406,918 - LRK53_RS10770 0.88 -0.9 2,407,028 - -1.1 2,407,028 - -0.1 2,407,126 + -0.7 2,407,126 + -0.9 2,407,298 + LRK53_RS10775 0.47 +0.9 2,407,298 + LRK53_RS10775 0.47 -1.4 2,407,299 - LRK53_RS10775 0.47 -1.6 2,407,441 + LRK53_RS10775 0.87 -2.1 2,407,442 - LRK53_RS10775 0.88 -2.6 2,407,490 + +1.9 2,407,490 + -0.1 2,407,490 + +0.2 2,407,490 + -0.1 2,407,490 + +0.6 2,407,490 + -0.1 2,407,491 - -0.7 2,407,491 - +0.9 2,407,491 - -2.1 2,407,491 - -2.4 2,407,530 + -0.9 2,407,530 + -1.8 2,407,530 + -0.3 2,407,530 + -1.5 2,407,531 - -0.7 2,407,531 - +0.9 2,407,531 - -0.1 2,407,561 + -2.4 2,407,561 + +0.9 2,407,561 + -1.3 2,407,562 - +0.3 2,407,778 + +0.9 2,407,785 + -0.9 2,407,785 + -0.4
Or see this region's nucleotide sequence