Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09825 and LRK53_RS09830 are separated by 4 nucleotides LRK53_RS09830 and LRK53_RS09835 overlap by 4 nucleotides
LRK53_RS09825: LRK53_RS09825 - ATP-binding cassette domain-containing protein, at 2,205,227 to 2,207,155
_RS09825
LRK53_RS09830: LRK53_RS09830 - phosphoglycerate mutase, at 2,207,160 to 2,208,080
_RS09830
LRK53_RS09835: LRK53_RS09835 - DHHA1 domain-containing protein, at 2,208,077 to 2,209,885
_RS09835
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2206.190 kb on + strand, within LRK53_RS09825 at 2206.392 kb on - strand, within LRK53_RS09825 at 2206.392 kb on - strand, within LRK53_RS09825 at 2206.800 kb on - strand, within LRK53_RS09825 at 2206.800 kb on - strand, within LRK53_RS09825 at 2206.960 kb on - strand, within LRK53_RS09825 at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.040 kb on - strand at 2207.040 kb on - strand at 2207.040 kb on - strand at 2207.040 kb on - strand at 2207.040 kb on - strand at 2207.280 kb on + strand, within LRK53_RS09830 at 2207.280 kb on + strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.302 kb on - strand, within LRK53_RS09830 at 2207.302 kb on - strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.408 kb on - strand, within LRK53_RS09830 at 2207.408 kb on - strand, within LRK53_RS09830 at 2207.574 kb on - strand, within LRK53_RS09830 at 2208.164 kb on + strand at 2208.165 kb on - strand at 2208.165 kb on - strand at 2208.165 kb on - strand at 2208.165 kb on - strand at 2208.314 kb on + strand, within LRK53_RS09835 at 2208.314 kb on + strand, within LRK53_RS09835 at 2208.315 kb on - strand, within LRK53_RS09835 at 2208.315 kb on - strand, within LRK53_RS09835 at 2208.389 kb on + strand, within LRK53_RS09835 at 2208.389 kb on + strand, within LRK53_RS09835 at 2208.390 kb on - strand, within LRK53_RS09835 at 2208.419 kb on + strand, within LRK53_RS09835 at 2208.457 kb on + strand, within LRK53_RS09835 at 2208.458 kb on - strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.696 kb on + strand, within LRK53_RS09835 at 2208.697 kb on - strand, within LRK53_RS09835 at 2208.697 kb on - strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.916 kb on - strand, within LRK53_RS09835 at 2208.916 kb on - strand, within LRK53_RS09835
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 2,206,190 + LRK53_RS09825 0.50 -1.9 2,206,392 - LRK53_RS09825 0.60 +0.6 2,206,392 - LRK53_RS09825 0.60 -0.1 2,206,800 - LRK53_RS09825 0.82 +0.8 2,206,800 - LRK53_RS09825 0.82 +0.9 2,206,960 - LRK53_RS09825 0.90 +0.1 2,207,039 + +0.5 2,207,039 + -0.1 2,207,039 + -0.4 2,207,039 + +0.3 2,207,039 + -0.6 2,207,039 + +0.9 2,207,039 + +0.9 2,207,039 + -0.1 2,207,039 + -0.8 2,207,039 + -0.1 2,207,039 + -0.1 2,207,040 - -0.2 2,207,040 - -0.7 2,207,040 - -1.0 2,207,040 - +0.9 2,207,040 - -0.1 2,207,280 + LRK53_RS09830 0.13 -1.1 2,207,280 + LRK53_RS09830 0.13 +0.9 2,207,281 - LRK53_RS09830 0.13 -1.7 2,207,281 - LRK53_RS09830 0.13 -0.1 2,207,281 - LRK53_RS09830 0.13 -0.1 2,207,281 - LRK53_RS09830 0.13 +0.9 2,207,281 - LRK53_RS09830 0.13 -1.4 2,207,281 - LRK53_RS09830 0.13 -0.1 2,207,302 - LRK53_RS09830 0.15 +0.9 2,207,302 - LRK53_RS09830 0.15 -2.1 2,207,407 + LRK53_RS09830 0.27 -1.4 2,207,407 + LRK53_RS09830 0.27 -1.2 2,207,407 + LRK53_RS09830 0.27 -0.1 2,207,407 + LRK53_RS09830 0.27 -0.1 2,207,407 + LRK53_RS09830 0.27 +0.9 2,207,407 + LRK53_RS09830 0.27 +0.9 2,207,408 - LRK53_RS09830 0.27 +0.9 2,207,408 - LRK53_RS09830 0.27 -0.7 2,207,574 - LRK53_RS09830 0.45 -1.9 2,208,164 + -0.8 2,208,165 - -0.7 2,208,165 - -1.0 2,208,165 - -1.3 2,208,165 - +0.3 2,208,314 + LRK53_RS09835 0.13 -1.8 2,208,314 + LRK53_RS09835 0.13 -1.1 2,208,315 - LRK53_RS09835 0.13 -1.2 2,208,315 - LRK53_RS09835 0.13 -0.1 2,208,389 + LRK53_RS09835 0.17 -0.1 2,208,389 + LRK53_RS09835 0.17 -0.7 2,208,390 - LRK53_RS09835 0.17 -0.4 2,208,419 + LRK53_RS09835 0.19 -1.5 2,208,457 + LRK53_RS09835 0.21 -0.7 2,208,458 - LRK53_RS09835 0.21 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.8 2,208,609 + LRK53_RS09835 0.29 -0.7 2,208,609 + LRK53_RS09835 0.29 -0.8 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.7 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -1.1 2,208,609 + LRK53_RS09835 0.29 -1.5 2,208,609 + LRK53_RS09835 0.29 -0.7 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -1.3 2,208,609 + LRK53_RS09835 0.29 +0.9 2,208,609 + LRK53_RS09835 0.29 +0.3 2,208,609 + LRK53_RS09835 0.29 +0.5 2,208,609 + LRK53_RS09835 0.29 +0.2 2,208,609 + LRK53_RS09835 0.29 -2.5 2,208,609 + LRK53_RS09835 0.29 -0.5 2,208,609 + LRK53_RS09835 0.29 -1.9 2,208,609 + LRK53_RS09835 0.29 -1.6 2,208,609 + LRK53_RS09835 0.29 +0.9 2,208,609 + LRK53_RS09835 0.29 -0.8 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.2 2,208,609 + LRK53_RS09835 0.29 -1.1 2,208,609 + LRK53_RS09835 0.29 -0.9 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -2.2 2,208,609 + LRK53_RS09835 0.29 -0.5 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.1 2,208,610 - LRK53_RS09835 0.29 -1.1 2,208,610 - LRK53_RS09835 0.29 +0.9 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 -1.4 2,208,610 - LRK53_RS09835 0.29 -1.4 2,208,610 - LRK53_RS09835 0.29 -1.1 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 -1.5 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.5 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 +1.2 2,208,610 - LRK53_RS09835 0.29 -1.3 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 -0.3 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 +0.9 2,208,610 - LRK53_RS09835 0.29 -0.7 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.8 2,208,610 - LRK53_RS09835 0.29 +2.5 2,208,610 - LRK53_RS09835 0.29 -1.9 2,208,610 - LRK53_RS09835 0.29 -0.8 2,208,610 - LRK53_RS09835 0.29 -1.4 2,208,610 - LRK53_RS09835 0.29 -1.2 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.8 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -0.7 2,208,610 - LRK53_RS09835 0.29 -1.1 2,208,610 - LRK53_RS09835 0.29 +0.3 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.3 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 +1.3 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -0.7 2,208,610 - LRK53_RS09835 0.29 -1.0 2,208,610 - LRK53_RS09835 0.29 +0.1 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 -2.4 2,208,610 - LRK53_RS09835 0.29 -2.1 2,208,610 - LRK53_RS09835 0.29 +0.9 2,208,696 + LRK53_RS09835 0.34 -1.5 2,208,697 - LRK53_RS09835 0.34 +1.9 2,208,697 - LRK53_RS09835 0.34 -0.9 2,208,704 + LRK53_RS09835 0.35 +0.9 2,208,704 + LRK53_RS09835 0.35 -0.1 2,208,704 + LRK53_RS09835 0.35 -1.1 2,208,704 + LRK53_RS09835 0.35 +0.9 2,208,704 + LRK53_RS09835 0.35 -0.7 2,208,704 + LRK53_RS09835 0.35 +1.9 2,208,705 - LRK53_RS09835 0.35 -2.2 2,208,705 - LRK53_RS09835 0.35 -1.4 2,208,705 - LRK53_RS09835 0.35 -0.8 2,208,705 - LRK53_RS09835 0.35 -1.4 2,208,705 - LRK53_RS09835 0.35 +0.9 2,208,705 - LRK53_RS09835 0.35 -1.1 2,208,915 + LRK53_RS09835 0.46 -0.8 2,208,915 + LRK53_RS09835 0.46 -0.7 2,208,915 + LRK53_RS09835 0.46 -0.9 2,208,915 + LRK53_RS09835 0.46 -1.8 2,208,916 - LRK53_RS09835 0.46 -1.4 2,208,916 - LRK53_RS09835 0.46 -1.0
Or see this region's nucleotide sequence