Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04435 and LRK53_RS04440 are separated by 116 nucleotides LRK53_RS04440 and LRK53_RS04445 are separated by 111 nucleotides
LRK53_RS04435: LRK53_RS04435 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,030,551 to 1,031,495
_RS04435
LRK53_RS04440: LRK53_RS04440 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,031,612 to 1,032,358
_RS04440
LRK53_RS04445: LRK53_RS04445 - glycoside hydrolase family 99-like domain-containing protein, at 1,032,470 to 1,034,530
_RS04445
Position (kb) 1031
1032
1033 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.724 kb on - strand, within LRK53_RS04435 at 1030.780 kb on + strand, within LRK53_RS04435 at 1030.780 kb on + strand, within LRK53_RS04435 at 1030.781 kb on - strand, within LRK53_RS04435 at 1030.781 kb on - strand, within LRK53_RS04435 at 1030.781 kb on - strand, within LRK53_RS04435 at 1030.861 kb on + strand, within LRK53_RS04435 at 1030.958 kb on + strand, within LRK53_RS04435 at 1030.959 kb on - strand, within LRK53_RS04435 at 1030.959 kb on - strand, within LRK53_RS04435 at 1031.107 kb on + strand, within LRK53_RS04435 at 1031.107 kb on + strand, within LRK53_RS04435 at 1031.108 kb on - strand, within LRK53_RS04435 at 1031.108 kb on - strand, within LRK53_RS04435 at 1031.108 kb on - strand, within LRK53_RS04435 at 1031.108 kb on - strand, within LRK53_RS04435 at 1031.108 kb on - strand, within LRK53_RS04435 at 1031.157 kb on + strand, within LRK53_RS04435 at 1031.157 kb on + strand, within LRK53_RS04435 at 1031.158 kb on - strand, within LRK53_RS04435 at 1031.158 kb on - strand, within LRK53_RS04435 at 1031.158 kb on - strand, within LRK53_RS04435 at 1031.158 kb on - strand, within LRK53_RS04435 at 1031.240 kb on - strand, within LRK53_RS04435 at 1031.240 kb on - strand, within LRK53_RS04435 at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.613 kb on + strand at 1031.614 kb on - strand at 1031.700 kb on + strand, within LRK53_RS04440 at 1031.700 kb on + strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1031.701 kb on - strand, within LRK53_RS04440 at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.321 kb on + strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.322 kb on - strand at 1032.340 kb on - strand at 1032.340 kb on - strand at 1032.432 kb on + strand at 1032.432 kb on + strand at 1032.432 kb on + strand at 1032.433 kb on - strand at 1032.433 kb on - strand at 1032.489 kb on + strand at 1032.795 kb on + strand, within LRK53_RS04445 at 1032.795 kb on + strand, within LRK53_RS04445 at 1032.972 kb on - strand, within LRK53_RS04445
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 1,030,724 - LRK53_RS04435 0.18 -1.3 1,030,724 - LRK53_RS04435 0.18 -0.7 1,030,724 - LRK53_RS04435 0.18 -0.0 1,030,724 - LRK53_RS04435 0.18 -0.0 1,030,724 - LRK53_RS04435 0.18 +0.2 1,030,724 - LRK53_RS04435 0.18 -1.0 1,030,724 - LRK53_RS04435 0.18 -1.6 1,030,724 - LRK53_RS04435 0.18 -1.0 1,030,724 - LRK53_RS04435 0.18 -1.6 1,030,724 - LRK53_RS04435 0.18 +1.0 1,030,724 - LRK53_RS04435 0.18 -0.0 1,030,724 - LRK53_RS04435 0.18 +1.0 1,030,724 - LRK53_RS04435 0.18 +1.6 1,030,724 - LRK53_RS04435 0.18 +2.6 1,030,724 - LRK53_RS04435 0.18 -1.5 1,030,724 - LRK53_RS04435 0.18 +2.0 1,030,724 - LRK53_RS04435 0.18 -0.6 1,030,724 - LRK53_RS04435 0.18 -1.0 1,030,724 - LRK53_RS04435 0.18 -0.2 1,030,724 - LRK53_RS04435 0.18 -1.0 1,030,724 - LRK53_RS04435 0.18 -0.3 1,030,724 - LRK53_RS04435 0.18 -1.6 1,030,724 - LRK53_RS04435 0.18 -0.0 1,030,724 - LRK53_RS04435 0.18 -1.4 1,030,724 - LRK53_RS04435 0.18 -1.2 1,030,724 - LRK53_RS04435 0.18 +1.0 1,030,724 - LRK53_RS04435 0.18 -0.4 1,030,724 - LRK53_RS04435 0.18 -1.6 1,030,724 - LRK53_RS04435 0.18 +3.3 1,030,724 - LRK53_RS04435 0.18 -3.2 1,030,780 + LRK53_RS04435 0.24 -1.6 1,030,780 + LRK53_RS04435 0.24 -0.6 1,030,781 - LRK53_RS04435 0.24 +1.0 1,030,781 - LRK53_RS04435 0.24 -0.2 1,030,781 - LRK53_RS04435 0.24 -0.0 1,030,861 + LRK53_RS04435 0.33 -0.0 1,030,958 + LRK53_RS04435 0.43 +1.6 1,030,959 - LRK53_RS04435 0.43 +0.3 1,030,959 - LRK53_RS04435 0.43 +1.0 1,031,107 + LRK53_RS04435 0.59 +0.4 1,031,107 + LRK53_RS04435 0.59 +0.4 1,031,108 - LRK53_RS04435 0.59 -1.0 1,031,108 - LRK53_RS04435 0.59 -0.5 1,031,108 - LRK53_RS04435 0.59 -1.5 1,031,108 - LRK53_RS04435 0.59 -1.7 1,031,108 - LRK53_RS04435 0.59 -1.6 1,031,157 + LRK53_RS04435 0.64 -0.6 1,031,157 + LRK53_RS04435 0.64 +1.0 1,031,158 - LRK53_RS04435 0.64 -0.6 1,031,158 - LRK53_RS04435 0.64 -2.0 1,031,158 - LRK53_RS04435 0.64 -1.5 1,031,158 - LRK53_RS04435 0.64 -0.5 1,031,240 - LRK53_RS04435 0.73 -2.0 1,031,240 - LRK53_RS04435 0.73 +1.0 1,031,613 + -0.0 1,031,613 + -1.4 1,031,613 + -0.4 1,031,613 + +0.5 1,031,613 + -0.8 1,031,613 + +1.4 1,031,613 + -1.8 1,031,613 + +1.0 1,031,614 - -1.5 1,031,700 + LRK53_RS04440 0.12 -1.4 1,031,700 + LRK53_RS04440 0.12 -2.3 1,031,701 - LRK53_RS04440 0.12 -1.8 1,031,701 - LRK53_RS04440 0.12 -1.7 1,031,701 - LRK53_RS04440 0.12 +0.5 1,031,701 - LRK53_RS04440 0.12 +2.0 1,031,701 - LRK53_RS04440 0.12 -0.8 1,031,701 - LRK53_RS04440 0.12 -1.8 1,032,321 + -0.0 1,032,321 + -1.4 1,032,321 + -0.6 1,032,321 + -1.4 1,032,321 + +2.6 1,032,321 + -1.2 1,032,321 + -0.0 1,032,321 + -0.6 1,032,321 + -1.0 1,032,322 - -0.0 1,032,322 - -1.0 1,032,322 - -0.4 1,032,322 - -0.0 1,032,322 - -1.7 1,032,322 - -0.6 1,032,322 - +0.3 1,032,322 - -1.0 1,032,340 - -0.0 1,032,340 - -1.0 1,032,432 + -0.0 1,032,432 + -0.8 1,032,432 + -0.3 1,032,433 - -0.1 1,032,433 - -0.9 1,032,489 + +1.0 1,032,795 + LRK53_RS04445 0.16 +1.0 1,032,795 + LRK53_RS04445 0.16 +2.0 1,032,972 - LRK53_RS04445 0.24 -1.6
Or see this region's nucleotide sequence