Strain Fitness in Rhodanobacter sp000427505 FW510-R12

Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04425

Experiment: pH4.8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	pH4.8
				remove
1,027,562	+			-1.0
1,027,562	+			+0.3
1,027,562	+			+0.6
1,027,563	-			-0.2
1,027,563	-			-0.6
1,027,563	-			-2.2
1,027,563	-			-0.3
1,027,563	-			-0.3
1,027,604	+	LRK53_RS04420	0.13	-2.0
1,027,604	+	LRK53_RS04420	0.13	-0.6
1,027,604	+	LRK53_RS04420	0.13	-0.6
1,027,604	+	LRK53_RS04420	0.13	-0.0
1,027,605	-	LRK53_RS04420	0.13	-0.9
1,027,613	+	LRK53_RS04420	0.14	-1.0
1,027,613	+	LRK53_RS04420	0.14	-0.6
1,027,613	+	LRK53_RS04420	0.14	-0.7
1,027,613	+	LRK53_RS04420	0.14	+0.4
1,027,613	+	LRK53_RS04420	0.14	-2.9
1,027,614	-	LRK53_RS04420	0.14	-0.1
1,027,614	-	LRK53_RS04420	0.14	-1.6
1,027,614	-	LRK53_RS04420	0.14	-1.1
1,027,614	-	LRK53_RS04420	0.14	+0.4
1,027,614	-	LRK53_RS04420	0.14	+0.4
1,027,641	+	LRK53_RS04420	0.16	-0.0
1,027,641	+	LRK53_RS04420	0.16	-0.8
1,027,641	+	LRK53_RS04420	0.16	+0.2
1,027,641	+	LRK53_RS04420	0.16	+1.0
1,027,642	-	LRK53_RS04420	0.17	-2.2
1,027,646	+	LRK53_RS04420	0.17	-0.3
1,027,647	-	LRK53_RS04420	0.17	-0.6
1,027,647	-	LRK53_RS04420	0.17	-0.5
1,027,647	-	LRK53_RS04420	0.17	-0.8
1,027,647	-	LRK53_RS04420	0.17	-0.0
1,027,647	-	LRK53_RS04420	0.17	-0.6
1,027,650	-	LRK53_RS04420	0.17	-1.0
1,027,705	+	LRK53_RS04420	0.23	-0.0
1,027,705	+	LRK53_RS04420	0.23	+1.0
1,027,705	+	LRK53_RS04420	0.23	-0.3
1,027,706	-	LRK53_RS04420	0.23	-3.1
1,027,706	-	LRK53_RS04420	0.23	-0.3
1,027,706	-	LRK53_RS04420	0.23	-0.5
1,027,706	-	LRK53_RS04420	0.23	-0.2
1,027,706	-	LRK53_RS04420	0.23	-1.8
1,027,706	-	LRK53_RS04420	0.23	-0.9
1,027,706	-	LRK53_RS04420	0.23	-2.2
1,027,781	-	LRK53_RS04420	0.30	-1.3
1,027,781	-	LRK53_RS04420	0.30	-1.3
1,027,986	+	LRK53_RS04420	0.50	-1.6
1,028,097	-	LRK53_RS04420	0.61	-0.9
1,028,134	+	LRK53_RS04420	0.65	-0.6
1,028,134	+	LRK53_RS04420	0.65	-1.3
1,028,135	-	LRK53_RS04420	0.65	+1.0
1,028,135	-	LRK53_RS04420	0.65	-1.2
1,028,208	-	LRK53_RS04420	0.72	-0.3
1,028,208	-	LRK53_RS04420	0.72	-0.6
1,028,208	-	LRK53_RS04420	0.72	-0.6
1,028,208	-	LRK53_RS04420	0.72	-0.6
1,028,255	+	LRK53_RS04420	0.77	-0.0
1,028,256	-	LRK53_RS04420	0.77	+0.6
1,028,279	+	LRK53_RS04420	0.79	+0.4
1,028,279	+	LRK53_RS04420	0.79	-1.8
1,028,279	+	LRK53_RS04420	0.79	-0.3
1,028,279	+	LRK53_RS04420	0.79	+0.1
1,028,280	-	LRK53_RS04420	0.79	+0.4
1,028,280	-	LRK53_RS04420	0.79	-0.6
1,028,280	-	LRK53_RS04420	0.79	+0.4
1,028,280	-	LRK53_RS04420	0.79	-0.6
1,028,280	-	LRK53_RS04420	0.79	-1.6
1,028,312	+	LRK53_RS04420	0.82	-1.3
1,028,313	-	LRK53_RS04420	0.82	-1.8
1,028,326	-	LRK53_RS04420	0.84	-0.6
1,028,326	-	LRK53_RS04420	0.84	-1.8
1,028,326	-	LRK53_RS04420	0.84	-1.3
1,028,326	-	LRK53_RS04420	0.84	+1.0
1,028,326	-	LRK53_RS04420	0.84	-1.0
1,028,380	+	LRK53_RS04420	0.89	+0.2
1,028,381	-	LRK53_RS04420	0.89	-1.2
1,028,386	+	LRK53_RS04420	0.90	-1.8
1,028,386	+	LRK53_RS04420	0.90	-0.2
1,028,386	+	LRK53_RS04420	0.90	-0.6
1,028,387	-	LRK53_RS04420	0.90	-0.9
1,028,387	-	LRK53_RS04420	0.90	-1.0
1,028,387	-	LRK53_RS04420	0.90	+1.0
1,028,387	-	LRK53_RS04420	0.90	-0.6
1,028,490	+			+0.1
1,028,490	+			-0.7
1,028,490	+			-0.8
1,028,490	+			-1.0
1,028,490	+			+1.0
1,028,490	+			+0.4
1,028,491	-			-0.0
1,028,491	-			-0.2
1,028,491	-			-0.9
1,028,491	-			-1.0
1,028,491	-			-0.6
1,028,528	+			-0.6
1,028,528	+			-1.3
1,028,528	+			-1.0
1,028,642	+	LRK53_RS04425	0.16	-1.0
1,028,647	+	LRK53_RS04425	0.16	-0.0
1,028,647	+	LRK53_RS04425	0.16	-0.0
1,028,647	+	LRK53_RS04425	0.16	-0.6
1,028,647	+	LRK53_RS04425	0.16	-0.9
1,028,647	+	LRK53_RS04425	0.16	-0.6
1,028,667	+	LRK53_RS04425	0.19	+1.0
1,028,667	+	LRK53_RS04425	0.19	-1.0
1,028,677	+	LRK53_RS04425	0.20	+0.3
1,028,707	+	LRK53_RS04425	0.23	-1.0
1,028,736	+	LRK53_RS04425	0.27	-1.5
1,028,736	+	LRK53_RS04425	0.27	-0.9
1,028,736	+	LRK53_RS04425	0.27	-0.3
1,028,753	+	LRK53_RS04425	0.29	-1.3
1,028,753	+	LRK53_RS04425	0.29	+0.2
1,028,753	+	LRK53_RS04425	0.29	-1.6
1,028,753	+	LRK53_RS04425	0.29	-1.3
1,028,760	+	LRK53_RS04425	0.29	-0.8
1,028,798	+	LRK53_RS04425	0.34	-1.3
1,028,798	+	LRK53_RS04425	0.34	-0.3
1,028,882	+	LRK53_RS04425	0.44	-0.0
1,028,882	+	LRK53_RS04425	0.44	-0.0
1,028,882	+	LRK53_RS04425	0.44	+1.0
1,028,882	+	LRK53_RS04425	0.44	+1.0
1,028,882	+	LRK53_RS04425	0.44	-1.3
1,028,883	-	LRK53_RS04425	0.44	-0.0
1,028,883	-	LRK53_RS04425	0.44	-0.0
1,028,905	+	LRK53_RS04425	0.46	-2.1
1,028,933	+	LRK53_RS04425	0.50	-1.1
1,028,933	+	LRK53_RS04425	0.50	-0.2
1,028,933	+	LRK53_RS04425	0.50	-0.6
1,028,933	+	LRK53_RS04425	0.50	-1.3
1,028,933	+	LRK53_RS04425	0.50	-0.6
1,028,933	+	LRK53_RS04425	0.50	-0.6
1,028,938	+	LRK53_RS04425	0.50	+2.0
1,028,938	+	LRK53_RS04425	0.50	-2.4
1,028,938	+	LRK53_RS04425	0.50	-1.6
1,028,938	+	LRK53_RS04425	0.50	-0.0
1,028,938	+	LRK53_RS04425	0.50	-1.4
1,028,940	+	LRK53_RS04425	0.51	-0.8
1,028,940	+	LRK53_RS04425	0.51	-0.3
1,028,940	+	LRK53_RS04425	0.51	-0.2
1,028,940	+	LRK53_RS04425	0.51	-1.1
1,028,940	+	LRK53_RS04425	0.51	-0.6
1,028,940	+	LRK53_RS04425	0.51	-1.6
1,028,940	+	LRK53_RS04425	0.51	-0.6
1,028,940	+	LRK53_RS04425	0.51	-0.3
1,028,940	+	LRK53_RS04425	0.51	-0.6
1,028,940	+	LRK53_RS04425	0.51	-0.8
1,028,974	+	LRK53_RS04425	0.55	+0.4
1,028,974	+	LRK53_RS04425	0.55	-1.0
1,028,974	+	LRK53_RS04425	0.55	-1.7
1,028,974	+	LRK53_RS04425	0.55	-0.0
1,028,974	+	LRK53_RS04425	0.55	-2.3
1,028,974	+	LRK53_RS04425	0.55	+1.0
1,029,014	+	LRK53_RS04425	0.59	-0.6
1,029,143	+	LRK53_RS04425	0.74	-0.0
1,029,143	+	LRK53_RS04425	0.74	-0.6
1,029,143	+	LRK53_RS04425	0.74	-0.3
1,029,144	-	LRK53_RS04425	0.74	+1.0
1,029,218	+	LRK53_RS04425	0.83	-0.8
1,029,219	-	LRK53_RS04425	0.83	-0.7
1,029,221	+	LRK53_RS04425	0.83	-1.3
1,029,221	+	LRK53_RS04425	0.83	+1.0
1,029,229	+	LRK53_RS04425	0.84	-1.2
1,029,320	+			-1.5
1,029,380	+			-1.0
1,029,380	+			-1.4
1,029,380	+			-2.7
1,029,381	-			-0.8
1,029,381	-			-1.7
1,029,382	+			-1.3
1,029,382	+			+0.2
1,029,382	+			-1.4
1,029,382	+			+1.8
1,029,382	+			+1.0
1,029,382	+			+0.4
1,029,382	+			-0.8
1,029,382	+			-0.0
1,029,382	+			-0.3
1,029,382	+			-1.3
1,029,382	+			-1.6
1,029,382	+			-1.4
1,029,382	+			+1.0
1,029,382	+			+1.0
1,029,383	-			-0.6
1,029,383	-			-0.3
1,029,383	-			-1.6
1,029,383	-			-0.2
1,029,383	-			-0.8
1,029,383	-			+2.0
1,029,383	-			-0.0
1,029,383	-			-0.6
1,029,383	-			-0.4
1,029,383	-			-0.6
1,029,383	-			+0.4
1,029,383	-			+0.4
1,029,383	-			+0.1
1,029,383	-			-0.6
1,029,383	-			-0.6
1,029,383	-			-1.6
1,029,383	-			+0.4
1,029,383	-			-2.0
1,029,437	+			-1.3
1,029,437	+			-0.0
1,029,437	+			+2.6
1,029,437	+			-1.0
1,029,437	+			-1.2
1,029,437	+			-0.4
1,029,438	-			-0.9
1,029,438	-			-1.3
1,029,438	-			-0.2
1,029,438	-			+0.7
1,029,438	-			-1.7
1,029,440	-			-1.6
1,029,440	-			-1.0
1,029,440	-			-0.6
1,029,526	+	LRK53_RS04430	0.16	-0.0
1,029,644	+	LRK53_RS04430	0.27	-1.2
1,029,645	-	LRK53_RS04430	0.27	-0.4
1,029,645	-	LRK53_RS04430	0.27	-0.2
1,029,651	+	LRK53_RS04430	0.28	-1.5
1,029,651	+	LRK53_RS04430	0.28	+0.4
1,029,651	+	LRK53_RS04430	0.28	-1.3
1,029,651	+	LRK53_RS04430	0.28	-0.5
1,029,651	+	LRK53_RS04430	0.28	+1.0
1,029,652	-	LRK53_RS04430	0.28	-0.6
1,029,652	-	LRK53_RS04430	0.28	-0.7
1,029,652	-	LRK53_RS04430	0.28	+0.4
1,029,652	-	LRK53_RS04430	0.28	+1.6
1,029,652	-	LRK53_RS04430	0.28	+0.4
1,029,652	-	LRK53_RS04430	0.28	-0.4
1,029,652	-	LRK53_RS04430	0.28	-0.2
1,029,657	+	LRK53_RS04430	0.28	-1.3
1,029,657	+	LRK53_RS04430	0.28	+0.4
1,029,657	+	LRK53_RS04430	0.28	-0.6
1,029,657	+	LRK53_RS04430	0.28	-0.9
1,029,658	-	LRK53_RS04430	0.29	-1.9
1,029,712	+	LRK53_RS04430	0.34	-0.6
1,029,713	-	LRK53_RS04430	0.34	+0.1
1,029,713	-	LRK53_RS04430	0.34	-1.3
1,029,747	+	LRK53_RS04430	0.37	-0.3
1,029,747	+	LRK53_RS04430	0.37	-1.6
1,029,748	-	LRK53_RS04430	0.37	-1.4
1,029,748	-	LRK53_RS04430	0.37	+1.0
1,029,748	-	LRK53_RS04430	0.37	+1.0
1,029,748	-	LRK53_RS04430	0.37	-1.7
1,029,748	-	LRK53_RS04430	0.37	-1.8
1,029,760	+	LRK53_RS04430	0.38	+0.1
1,029,760	+	LRK53_RS04430	0.38	-0.6
1,029,790	+	LRK53_RS04430	0.41	-0.8
1,029,790	+	LRK53_RS04430	0.41	-1.9
1,029,790	+	LRK53_RS04430	0.41	-2.2
1,029,790	+	LRK53_RS04430	0.41	-0.4
1,029,790	+	LRK53_RS04430	0.41	-1.8
1,029,790	+	LRK53_RS04430	0.41	-1.4
1,029,790	+	LRK53_RS04430	0.41	-0.6
1,029,791	-	LRK53_RS04430	0.41	-1.0
1,029,791	-	LRK53_RS04430	0.41	-0.6
1,029,791	-	LRK53_RS04430	0.41	-0.9
1,029,791	-	LRK53_RS04430	0.41	-1.3
1,029,791	-	LRK53_RS04430	0.41	-0.5
1,029,808	+	LRK53_RS04430	0.43	-1.7
1,029,809	-	LRK53_RS04430	0.43	-0.2
1,029,825	+	LRK53_RS04430	0.45	+0.4
1,029,825	+	LRK53_RS04430	0.45	+0.7
1,029,826	-	LRK53_RS04430	0.45	+0.7
1,029,826	-	LRK53_RS04430	0.45	-0.0
1,029,885	+	LRK53_RS04430	0.50	+1.0
1,029,885	+	LRK53_RS04430	0.50	-0.9
1,029,886	-	LRK53_RS04430	0.50	-1.0
1,029,886	-	LRK53_RS04430	0.50	-0.3
1,029,963	-	LRK53_RS04430	0.58	-1.6
1,029,963	-	LRK53_RS04430	0.58	-0.6
1,030,002	+	LRK53_RS04430	0.61	-1.3
1,030,003	-	LRK53_RS04430	0.62	-0.2
1,030,003	-	LRK53_RS04430	0.62	-1.0
1,030,023	+	LRK53_RS04430	0.63	+0.4
1,030,023	+	LRK53_RS04430	0.63	-2.5
1,030,023	+	LRK53_RS04430	0.63	-0.6
1,030,023	+	LRK53_RS04430	0.63	-0.6
1,030,024	-	LRK53_RS04430	0.64	-0.8
1,030,169	+	LRK53_RS04430	0.77	-1.6
1,030,169	+	LRK53_RS04430	0.77	-0.4
1,030,169	+	LRK53_RS04430	0.77	-0.4
1,030,170	-	LRK53_RS04430	0.77	-0.5
1,030,170	-	LRK53_RS04430	0.77	-0.1
1,030,170	-	LRK53_RS04430	0.77	-1.3
1,030,170	-	LRK53_RS04430	0.77	-1.2
1,030,191	-	LRK53_RS04430	0.79	-0.2
1,030,227	+	LRK53_RS04430	0.83	-1.0
1,030,227	+	LRK53_RS04430	0.83	-1.3
1,030,227	+	LRK53_RS04430	0.83	-1.6
1,030,228	-	LRK53_RS04430	0.83	-0.8
1,030,228	-	LRK53_RS04430	0.83	-0.0
1,030,228	-	LRK53_RS04430	0.83	-1.5
1,030,240	+	LRK53_RS04430	0.84	-2.6
1,030,240	+	LRK53_RS04430	0.84	-1.3
1,030,240	+	LRK53_RS04430	0.84	-1.6
1,030,240	+	LRK53_RS04430	0.84	-0.8
1,030,241	-	LRK53_RS04430	0.84	-0.4
1,030,241	-	LRK53_RS04430	0.84	-0.6
1,030,261	+	LRK53_RS04430	0.86	-0.9
1,030,262	-	LRK53_RS04430	0.86	-0.9
1,030,266	+	LRK53_RS04430	0.87	-1.3
1,030,266	+	LRK53_RS04430	0.87	-1.0
1,030,267	-	LRK53_RS04430	0.87	-1.4
1,030,267	-	LRK53_RS04430	0.87	+0.4
1,030,267	-	LRK53_RS04430	0.87	-1.1
1,030,267	-	LRK53_RS04430	0.87	+2.0
1,030,267	-	LRK53_RS04430	0.87	-1.3
1,030,267	-	LRK53_RS04430	0.87	-0.6
1,030,267	-	LRK53_RS04430	0.87	+1.0
1,030,340	-			-0.0

Or see this region's nucleotide sequence