Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04255 and LRK53_RS04260 overlap by 4 nucleotides LRK53_RS04260 and LRK53_RS04265 are separated by 166 nucleotides LRK53_RS04265 and LRK53_RS04270 are separated by 127 nucleotides LRK53_RS04270 and LRK53_RS04275 overlap by 4 nucleotides
LRK53_RS04255: LRK53_RS04255 - hypothetical protein, at 992,561 to 992,968
_RS04255
LRK53_RS04260: LRK53_RS04260 - DUF962 domain-containing protein, at 992,965 to 993,456
_RS04260
LRK53_RS04265: LRK53_RS04265 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 993,623 to 994,519
_RS04265
LRK53_RS04270: LRK53_RS04270 - c-type cytochrome, at 994,647 to 994,955
_RS04270
LRK53_RS04275: LRK53_RS04275 - co-chaperone DjlA, at 994,952 to 995,758
_RS04275
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 992.769 kb on + strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.954 kb on - strand at 993.035 kb on + strand, within LRK53_RS04260 at 993.035 kb on + strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.115 kb on + strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.161 kb on + strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.239 kb on + strand, within LRK53_RS04260 at 993.240 kb on - strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.488 kb on + strand at 993.488 kb on + strand at 993.488 kb on + strand at 993.488 kb on + strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.624 kb on + strand at 993.666 kb on + strand at 993.666 kb on + strand at 993.667 kb on - strand at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.787 kb on + strand, within LRK53_RS04265 at 993.788 kb on - strand, within LRK53_RS04265 at 993.798 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.928 kb on - strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 994.143 kb on + strand, within LRK53_RS04265 at 994.143 kb on + strand, within LRK53_RS04265 at 994.144 kb on - strand, within LRK53_RS04265 at 994.171 kb on - strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.446 kb on + strand at 994.447 kb on - strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.556 kb on + strand at 994.556 kb on + strand at 994.612 kb on + strand at 994.657 kb on + strand at 994.657 kb on + strand at 994.657 kb on + strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.812 kb on + strand, within LRK53_RS04270 at 994.812 kb on + strand, within LRK53_RS04270 at 994.812 kb on + strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 995.061 kb on - strand, within LRK53_RS04275 at 995.425 kb on + strand, within LRK53_RS04275 at 995.468 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.511 kb on - strand, within LRK53_RS04275
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 992,769 + LRK53_RS04255 0.51 +1.0 992,770 - LRK53_RS04255 0.51 +1.5 992,770 - LRK53_RS04255 0.51 -1.1 992,770 - LRK53_RS04255 0.51 +1.0 992,829 + LRK53_RS04255 0.66 -1.0 992,829 + LRK53_RS04255 0.66 +1.6 992,829 + LRK53_RS04255 0.66 -0.4 992,829 + LRK53_RS04255 0.66 +0.6 992,829 + LRK53_RS04255 0.66 -1.8 992,829 + LRK53_RS04255 0.66 -1.6 992,829 + LRK53_RS04255 0.66 -0.6 992,829 + LRK53_RS04255 0.66 -1.6 992,829 + LRK53_RS04255 0.66 -1.0 992,829 + LRK53_RS04255 0.66 -2.0 992,829 + LRK53_RS04255 0.66 -1.0 992,829 + LRK53_RS04255 0.66 -1.6 992,829 + LRK53_RS04255 0.66 -2.0 992,829 + LRK53_RS04255 0.66 +1.0 992,830 - LRK53_RS04255 0.66 +0.4 992,830 - LRK53_RS04255 0.66 -1.4 992,830 - LRK53_RS04255 0.66 -0.0 992,830 - LRK53_RS04255 0.66 -0.6 992,830 - LRK53_RS04255 0.66 -0.1 992,919 + LRK53_RS04255 0.88 +0.4 992,919 + LRK53_RS04255 0.88 -1.6 992,919 + LRK53_RS04255 0.88 -0.6 992,919 + LRK53_RS04255 0.88 +0.4 992,919 + LRK53_RS04255 0.88 -2.1 992,919 + LRK53_RS04255 0.88 -0.0 992,919 + LRK53_RS04255 0.88 -0.0 992,919 + LRK53_RS04255 0.88 +0.2 992,919 + LRK53_RS04255 0.88 -0.3 992,919 + LRK53_RS04255 0.88 -1.6 992,920 - LRK53_RS04255 0.88 -0.8 992,920 - LRK53_RS04255 0.88 +0.6 992,920 - LRK53_RS04255 0.88 +1.0 992,920 - LRK53_RS04255 0.88 -0.3 992,920 - LRK53_RS04255 0.88 -0.6 992,920 - LRK53_RS04255 0.88 -1.4 992,920 - LRK53_RS04255 0.88 +1.6 992,920 - LRK53_RS04255 0.88 -0.6 992,954 - +0.4 993,035 + LRK53_RS04260 0.14 -1.4 993,035 + LRK53_RS04260 0.14 -1.1 993,036 - LRK53_RS04260 0.14 -0.4 993,036 - LRK53_RS04260 0.14 +1.6 993,036 - LRK53_RS04260 0.14 +0.6 993,115 + LRK53_RS04260 0.30 -0.4 993,116 - LRK53_RS04260 0.31 -0.6 993,116 - LRK53_RS04260 0.31 +1.0 993,161 + LRK53_RS04260 0.40 -0.0 993,162 - LRK53_RS04260 0.40 -0.3 993,162 - LRK53_RS04260 0.40 -1.6 993,162 - LRK53_RS04260 0.40 -0.6 993,162 - LRK53_RS04260 0.40 -1.4 993,239 + LRK53_RS04260 0.56 -0.0 993,240 - LRK53_RS04260 0.56 -2.0 993,245 + LRK53_RS04260 0.57 -1.7 993,245 + LRK53_RS04260 0.57 -0.4 993,245 + LRK53_RS04260 0.57 -2.0 993,246 - LRK53_RS04260 0.57 -0.6 993,246 - LRK53_RS04260 0.57 +0.6 993,246 - LRK53_RS04260 0.57 -0.6 993,246 - LRK53_RS04260 0.57 +0.4 993,246 - LRK53_RS04260 0.57 +1.3 993,246 - LRK53_RS04260 0.57 +1.0 993,404 + LRK53_RS04260 0.89 -1.0 993,404 + LRK53_RS04260 0.89 +1.0 993,404 + LRK53_RS04260 0.89 -0.3 993,404 + LRK53_RS04260 0.89 +1.0 993,404 + LRK53_RS04260 0.89 -0.0 993,404 + LRK53_RS04260 0.89 -0.4 993,404 + LRK53_RS04260 0.89 -1.3 993,405 - LRK53_RS04260 0.89 +0.4 993,405 - LRK53_RS04260 0.89 +1.3 993,405 - LRK53_RS04260 0.89 -1.4 993,405 - LRK53_RS04260 0.89 -0.0 993,405 - LRK53_RS04260 0.89 -0.6 993,405 - LRK53_RS04260 0.89 +0.2 993,488 + -1.2 993,488 + -1.1 993,488 + -0.6 993,488 + -0.6 993,489 - +2.0 993,489 - -2.4 993,489 - -1.0 993,489 - +1.0 993,489 - -1.8 993,489 - -1.4 993,489 - -0.6 993,489 - -1.0 993,532 - -0.0 993,532 - -1.0 993,532 - -1.8 993,532 - -0.3 993,532 - +2.0 993,624 + -0.6 993,666 + -0.6 993,666 + -0.0 993,667 - -1.0 993,772 - LRK53_RS04265 0.17 -2.0 993,772 - LRK53_RS04265 0.17 -1.0 993,772 - LRK53_RS04265 0.17 -1.8 993,772 - LRK53_RS04265 0.17 -0.0 993,787 + LRK53_RS04265 0.18 -1.4 993,788 - LRK53_RS04265 0.18 -0.6 993,798 + LRK53_RS04265 0.20 -1.0 993,855 + LRK53_RS04265 0.26 -1.4 993,855 + LRK53_RS04265 0.26 -1.0 993,855 + LRK53_RS04265 0.26 -3.2 993,855 + LRK53_RS04265 0.26 -1.8 993,855 + LRK53_RS04265 0.26 -0.6 993,855 + LRK53_RS04265 0.26 -0.6 993,856 - LRK53_RS04265 0.26 -2.5 993,856 - LRK53_RS04265 0.26 -1.0 993,856 - LRK53_RS04265 0.26 -2.5 993,856 - LRK53_RS04265 0.26 -1.8 993,856 - LRK53_RS04265 0.26 -1.8 993,856 - LRK53_RS04265 0.26 -1.8 993,928 - LRK53_RS04265 0.34 -2.5 993,945 + LRK53_RS04265 0.36 -1.4 993,945 + LRK53_RS04265 0.36 -0.0 993,945 + LRK53_RS04265 0.36 -3.3 993,945 + LRK53_RS04265 0.36 -2.4 993,946 - LRK53_RS04265 0.36 -1.5 993,946 - LRK53_RS04265 0.36 -1.8 994,143 + LRK53_RS04265 0.58 -0.6 994,143 + LRK53_RS04265 0.58 -0.0 994,144 - LRK53_RS04265 0.58 -1.4 994,171 - LRK53_RS04265 0.61 -2.7 994,236 + LRK53_RS04265 0.68 -1.4 994,236 + LRK53_RS04265 0.68 -2.4 994,236 + LRK53_RS04265 0.68 -1.8 994,236 + LRK53_RS04265 0.68 -1.0 994,236 + LRK53_RS04265 0.68 -1.6 994,236 + LRK53_RS04265 0.68 -0.6 994,236 + LRK53_RS04265 0.68 -1.9 994,236 + LRK53_RS04265 0.68 -0.0 994,236 + LRK53_RS04265 0.68 -1.6 994,237 - LRK53_RS04265 0.68 -1.4 994,237 - LRK53_RS04265 0.68 -1.0 994,237 - LRK53_RS04265 0.68 -1.4 994,237 - LRK53_RS04265 0.68 -1.6 994,237 - LRK53_RS04265 0.68 -0.0 994,237 - LRK53_RS04265 0.68 -3.4 994,446 + -1.0 994,447 - -2.2 994,448 + -2.7 994,448 + -1.8 994,448 + -2.2 994,448 + -1.8 994,448 + -1.4 994,448 + -1.4 994,448 + -1.0 994,448 + -1.6 994,449 - -1.8 994,449 - -0.6 994,449 - -0.6 994,449 - -2.4 994,449 - -1.0 994,449 - -1.8 994,449 - -3.4 994,449 - -1.6 994,449 - -2.5 994,449 - -1.0 994,449 - -0.6 994,556 + -0.0 994,556 + -0.3 994,612 + -0.0 994,657 + -0.0 994,657 + -0.0 994,657 + -0.6 994,658 - +0.4 994,658 - -1.8 994,658 - +1.2 994,658 - -0.6 994,658 - +0.6 994,812 + LRK53_RS04270 0.53 -0.5 994,812 + LRK53_RS04270 0.53 -1.4 994,812 + LRK53_RS04270 0.53 -0.5 994,813 - LRK53_RS04270 0.54 -0.9 994,813 - LRK53_RS04270 0.54 -1.0 994,813 - LRK53_RS04270 0.54 +0.6 994,813 - LRK53_RS04270 0.54 +2.0 994,813 - LRK53_RS04270 0.54 +1.0 994,923 + LRK53_RS04270 0.89 -0.0 994,923 + LRK53_RS04270 0.89 -0.4 994,923 + LRK53_RS04270 0.89 -1.0 994,923 + LRK53_RS04270 0.89 -1.4 994,924 - LRK53_RS04270 0.90 +1.3 994,924 - LRK53_RS04270 0.90 -0.6 994,924 - LRK53_RS04270 0.90 -0.4 994,958 + -1.4 994,958 + -1.3 994,958 + -0.0 994,958 + +1.0 994,958 + -0.4 994,958 + +1.0 994,958 + -1.5 994,958 + -0.0 994,958 + -0.0 994,958 + -1.0 994,958 + -2.0 994,958 + -2.0 994,958 + -0.4 994,958 + +1.0 994,958 + -0.0 994,958 + -0.6 994,958 + -1.9 994,959 - +0.4 994,959 - -1.5 994,959 - -0.0 994,959 - -1.8 994,959 - -2.9 994,959 - +1.0 994,959 - -3.3 994,959 - -1.8 994,959 - -1.0 994,959 - -0.9 994,959 - -0.6 994,959 - -1.7 994,959 - -1.6 994,964 + -2.2 994,964 + -1.6 994,964 + -1.4 994,964 + -1.0 994,964 + -0.6 994,964 + -0.1 994,964 + -0.6 994,964 + -1.5 994,964 + +0.4 994,964 + -0.0 994,964 + +0.2 994,964 + +1.7 994,964 + -2.0 994,964 + +0.6 994,964 + -1.0 994,964 + -1.1 994,964 + -0.6 994,964 + +1.4 994,965 - -0.8 994,965 - -0.6 994,965 - -1.6 994,965 - -0.8 994,965 - -2.6 994,965 - +1.0 994,965 - -2.5 994,965 - -1.5 994,965 - -2.0 994,965 - -1.4 994,965 - -1.5 994,965 - -1.0 994,965 - -0.6 994,965 - -0.6 994,965 - -0.8 994,965 - -1.6 995,061 - LRK53_RS04275 0.14 -2.3 995,425 + LRK53_RS04275 0.59 +0.4 995,468 + LRK53_RS04275 0.64 -1.7 995,510 + LRK53_RS04275 0.69 -0.6 995,510 + LRK53_RS04275 0.69 +0.4 995,510 + LRK53_RS04275 0.69 -1.6 995,511 - LRK53_RS04275 0.69 +1.0
Or see this region's nucleotide sequence