Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03695

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03690 and LRK53_RS03695 are separated by 249 nucleotidesLRK53_RS03695 and LRK53_RS03700 are separated by 202 nucleotides LRK53_RS03690: LRK53_RS03690 - dihydroorotase, at 869,765 to 870,802 _RS03690 LRK53_RS03695: LRK53_RS03695 - glutamate--cysteine ligase, at 871,052 to 872,419 _RS03695 LRK53_RS03700: LRK53_RS03700 - transcription termination factor Rho, at 872,622 to 874,406 _RS03700 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 870.068 kb on + strand, within LRK53_RS03690at 870.068 kb on + strand, within LRK53_RS03690at 870.069 kb on - strand, within LRK53_RS03690at 870.069 kb on - strand, within LRK53_RS03690at 870.419 kb on + strand, within LRK53_RS03690at 870.567 kb on - strand, within LRK53_RS03690at 870.593 kb on + strand, within LRK53_RS03690at 870.593 kb on + strand, within LRK53_RS03690at 870.593 kb on + strand, within LRK53_RS03690at 870.594 kb on - strand, within LRK53_RS03690at 870.594 kb on - strand, within LRK53_RS03690at 870.668 kb on + strand, within LRK53_RS03690at 870.735 kb on - strandat 870.801 kb on - strandat 870.801 kb on - strandat 870.826 kb on - strandat 870.826 kb on - strandat 870.826 kb on - strandat 870.826 kb on - strandat 870.898 kb on + strandat 870.953 kb on + strandat 870.953 kb on + strandat 870.953 kb on + strandat 870.953 kb on + strandat 870.953 kb on + strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.954 kb on - strandat 870.969 kb on + strandat 870.970 kb on - strandat 870.970 kb on - strandat 871.015 kb on + strandat 871.015 kb on + strandat 871.015 kb on + strandat 871.015 kb on + strandat 871.015 kb on + strandat 871.016 kb on - strandat 871.016 kb on - strandat 871.016 kb on - strandat 871.016 kb on - strandat 871.057 kb on - strandat 871.389 kb on + strand, within LRK53_RS03695at 871.390 kb on - strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.467 kb on + strand, within LRK53_RS03695at 871.468 kb on - strand, within LRK53_RS03695at 871.468 kb on - strand, within LRK53_RS03695at 871.602 kb on + strand, within LRK53_RS03695at 871.602 kb on + strand, within LRK53_RS03695at 871.603 kb on - strand, within LRK53_RS03695at 871.603 kb on - strand, within LRK53_RS03695at 871.603 kb on - strand, within LRK53_RS03695at 871.603 kb on - strand, within LRK53_RS03695at 871.617 kb on + strand, within LRK53_RS03695at 871.617 kb on + strand, within LRK53_RS03695at 871.617 kb on + strand, within LRK53_RS03695at 871.618 kb on - strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.626 kb on + strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.627 kb on - strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.647 kb on + strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.648 kb on - strand, within LRK53_RS03695at 871.656 kb on + strand, within LRK53_RS03695at 871.657 kb on - strand, within LRK53_RS03695at 871.657 kb on - strand, within LRK53_RS03695at 871.743 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.752 kb on + strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.753 kb on - strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.935 kb on + strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.936 kb on - strand, within LRK53_RS03695at 871.953 kb on + strand, within LRK53_RS03695at 871.953 kb on + strand, within LRK53_RS03695at 871.953 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.051 kb on + strand, within LRK53_RS03695at 872.052 kb on - strand, within LRK53_RS03695at 872.052 kb on - strand, within LRK53_RS03695at 872.052 kb on - strand, within LRK53_RS03695at 872.052 kb on - strand, within LRK53_RS03695at 872.052 kb on - strand, within LRK53_RS03695at 872.225 kb on - strand, within LRK53_RS03695at 872.225 kb on - strand, within LRK53_RS03695at 872.276 kb on + strand, within LRK53_RS03695at 872.276 kb on + strand, within LRK53_RS03695at 872.276 kb on + strand, within LRK53_RS03695at 872.276 kb on + strand, within LRK53_RS03695at 872.276 kb on + strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.277 kb on - strand, within LRK53_RS03695at 872.358 kb on + strandat 872.358 kb on + strandat 872.358 kb on + strandat 872.358 kb on + strandat 872.359 kb on - strandat 872.359 kb on - strandat 872.359 kb on - strandat 872.359 kb on - strandat 872.359 kb on - strandat 872.449 kb on + strandat 872.449 kb on + strandat 872.449 kb on + strandat 872.554 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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870,068 + LRK53_RS03690 0.29 +1.0
870,068 + LRK53_RS03690 0.29 +1.0
870,069 - LRK53_RS03690 0.29 +1.0
870,069 - LRK53_RS03690 0.29 +0.0
870,419 + LRK53_RS03690 0.63 +1.0
870,567 - LRK53_RS03690 0.77 -1.0
870,593 + LRK53_RS03690 0.80 +1.0
870,593 + LRK53_RS03690 0.80 +1.0
870,593 + LRK53_RS03690 0.80 +0.0
870,594 - LRK53_RS03690 0.80 +0.0
870,594 - LRK53_RS03690 0.80 +1.0
870,668 + LRK53_RS03690 0.87 +1.0
870,735 - +0.0
870,801 - -0.3
870,801 - -0.6
870,826 - -1.7
870,826 - +1.0
870,826 - +0.0
870,826 - +1.0
870,898 + -2.0
870,953 + -2.0
870,953 + -1.3
870,953 + -0.4
870,953 + -0.8
870,953 + -1.3
870,954 - -0.6
870,954 - -1.3
870,954 - -0.6
870,954 - +2.0
870,954 - +1.0
870,954 - -1.5
870,954 - -1.8
870,969 + +0.0
870,970 - -0.6
870,970 - +0.0
871,015 + -1.3
871,015 + -1.9
871,015 + -0.3
871,015 + -0.7
871,015 + -0.2
871,016 - +0.2
871,016 - +0.4
871,016 - +0.0
871,016 - -0.3
871,057 - -0.4
871,389 + LRK53_RS03695 0.25 -2.7
871,390 - LRK53_RS03695 0.25 +1.0
871,467 + LRK53_RS03695 0.30 -1.8
871,467 + LRK53_RS03695 0.30 -1.3
871,467 + LRK53_RS03695 0.30 -1.6
871,467 + LRK53_RS03695 0.30 -3.2
871,467 + LRK53_RS03695 0.30 +0.0
871,467 + LRK53_RS03695 0.30 -1.6
871,467 + LRK53_RS03695 0.30 -1.2
871,467 + LRK53_RS03695 0.30 +0.0
871,468 - LRK53_RS03695 0.30 -1.0
871,468 - LRK53_RS03695 0.30 +1.0
871,602 + LRK53_RS03695 0.40 -3.5
871,602 + LRK53_RS03695 0.40 +1.0
871,603 - LRK53_RS03695 0.40 -1.0
871,603 - LRK53_RS03695 0.40 -2.2
871,603 - LRK53_RS03695 0.40 -1.7
871,603 - LRK53_RS03695 0.40 +0.0
871,617 + LRK53_RS03695 0.41 +0.0
871,617 + LRK53_RS03695 0.41 -2.7
871,617 + LRK53_RS03695 0.41 -3.0
871,618 - LRK53_RS03695 0.41 -2.3
871,626 + LRK53_RS03695 0.42 -2.1
871,626 + LRK53_RS03695 0.42 +0.0
871,626 + LRK53_RS03695 0.42 +0.0
871,626 + LRK53_RS03695 0.42 -2.2
871,626 + LRK53_RS03695 0.42 -2.0
871,626 + LRK53_RS03695 0.42 -1.6
871,626 + LRK53_RS03695 0.42 -0.6
871,626 + LRK53_RS03695 0.42 +0.0
871,627 - LRK53_RS03695 0.42 -2.0
871,627 - LRK53_RS03695 0.42 -0.6
871,627 - LRK53_RS03695 0.42 -1.0
871,627 - LRK53_RS03695 0.42 -2.0
871,627 - LRK53_RS03695 0.42 -1.3
871,627 - LRK53_RS03695 0.42 -1.8
871,627 - LRK53_RS03695 0.42 -1.0
871,627 - LRK53_RS03695 0.42 -2.0
871,627 - LRK53_RS03695 0.42 -1.0
871,627 - LRK53_RS03695 0.42 -2.9
871,647 + LRK53_RS03695 0.43 -1.3
871,647 + LRK53_RS03695 0.43 -1.0
871,647 + LRK53_RS03695 0.43 -1.8
871,647 + LRK53_RS03695 0.43 +0.0
871,647 + LRK53_RS03695 0.43 -1.8
871,647 + LRK53_RS03695 0.43 -1.8
871,647 + LRK53_RS03695 0.43 -1.6
871,647 + LRK53_RS03695 0.43 -1.6
871,647 + LRK53_RS03695 0.43 +1.0
871,647 + LRK53_RS03695 0.43 +1.0
871,647 + LRK53_RS03695 0.43 -2.2
871,647 + LRK53_RS03695 0.43 +0.0
871,647 + LRK53_RS03695 0.43 -0.6
871,647 + LRK53_RS03695 0.43 -1.2
871,647 + LRK53_RS03695 0.43 -0.8
871,647 + LRK53_RS03695 0.43 -1.0
871,648 - LRK53_RS03695 0.44 -0.6
871,648 - LRK53_RS03695 0.44 -1.3
871,648 - LRK53_RS03695 0.44 -1.8
871,648 - LRK53_RS03695 0.44 -0.8
871,648 - LRK53_RS03695 0.44 -1.0
871,648 - LRK53_RS03695 0.44 -0.6
871,648 - LRK53_RS03695 0.44 -0.6
871,648 - LRK53_RS03695 0.44 -1.7
871,648 - LRK53_RS03695 0.44 -2.3
871,648 - LRK53_RS03695 0.44 -2.0
871,648 - LRK53_RS03695 0.44 +0.0
871,648 - LRK53_RS03695 0.44 -2.2
871,648 - LRK53_RS03695 0.44 -1.8
871,648 - LRK53_RS03695 0.44 -1.3
871,648 - LRK53_RS03695 0.44 +0.0
871,648 - LRK53_RS03695 0.44 +0.0
871,656 + LRK53_RS03695 0.44 -1.8
871,657 - LRK53_RS03695 0.44 +0.0
871,657 - LRK53_RS03695 0.44 +1.0
871,743 + LRK53_RS03695 0.51 +0.0
871,752 + LRK53_RS03695 0.51 -1.0
871,752 + LRK53_RS03695 0.51 -0.6
871,752 + LRK53_RS03695 0.51 -3.0
871,752 + LRK53_RS03695 0.51 +1.0
871,752 + LRK53_RS03695 0.51 +0.0
871,752 + LRK53_RS03695 0.51 -3.2
871,753 - LRK53_RS03695 0.51 +0.0
871,753 - LRK53_RS03695 0.51 -0.6
871,753 - LRK53_RS03695 0.51 -1.0
871,753 - LRK53_RS03695 0.51 -2.5
871,753 - LRK53_RS03695 0.51 +0.0
871,753 - LRK53_RS03695 0.51 -1.8
871,753 - LRK53_RS03695 0.51 -1.3
871,935 + LRK53_RS03695 0.65 -2.5
871,935 + LRK53_RS03695 0.65 -2.8
871,935 + LRK53_RS03695 0.65 -1.3
871,935 + LRK53_RS03695 0.65 -2.2
871,935 + LRK53_RS03695 0.65 -1.4
871,935 + LRK53_RS03695 0.65 -2.0
871,935 + LRK53_RS03695 0.65 -2.6
871,935 + LRK53_RS03695 0.65 -2.3
871,935 + LRK53_RS03695 0.65 -2.3
871,935 + LRK53_RS03695 0.65 -1.6
871,935 + LRK53_RS03695 0.65 -2.2
871,935 + LRK53_RS03695 0.65 +1.0
871,935 + LRK53_RS03695 0.65 -1.1
871,935 + LRK53_RS03695 0.65 -0.6
871,935 + LRK53_RS03695 0.65 -1.0
871,935 + LRK53_RS03695 0.65 -1.8
871,935 + LRK53_RS03695 0.65 -0.6
871,935 + LRK53_RS03695 0.65 -0.3
871,935 + LRK53_RS03695 0.65 -1.0
871,936 - LRK53_RS03695 0.65 -2.2
871,936 - LRK53_RS03695 0.65 -1.8
871,936 - LRK53_RS03695 0.65 -3.4
871,936 - LRK53_RS03695 0.65 +1.0
871,936 - LRK53_RS03695 0.65 -1.3
871,936 - LRK53_RS03695 0.65 -2.6
871,936 - LRK53_RS03695 0.65 -1.0
871,936 - LRK53_RS03695 0.65 -2.2
871,936 - LRK53_RS03695 0.65 -1.0
871,936 - LRK53_RS03695 0.65 +0.0
871,936 - LRK53_RS03695 0.65 -1.3
871,936 - LRK53_RS03695 0.65 -2.8
871,936 - LRK53_RS03695 0.65 -1.0
871,936 - LRK53_RS03695 0.65 +0.0
871,936 - LRK53_RS03695 0.65 +0.0
871,936 - LRK53_RS03695 0.65 +1.0
871,936 - LRK53_RS03695 0.65 -1.0
871,953 + LRK53_RS03695 0.66 -1.3
871,953 + LRK53_RS03695 0.66 -1.0
871,953 + LRK53_RS03695 0.66 -1.6
872,051 + LRK53_RS03695 0.73 -1.3
872,051 + LRK53_RS03695 0.73 -1.6
872,051 + LRK53_RS03695 0.73 -1.2
872,051 + LRK53_RS03695 0.73 -1.5
872,051 + LRK53_RS03695 0.73 -2.2
872,051 + LRK53_RS03695 0.73 -1.2
872,051 + LRK53_RS03695 0.73 -1.0
872,051 + LRK53_RS03695 0.73 -2.2
872,052 - LRK53_RS03695 0.73 +1.0
872,052 - LRK53_RS03695 0.73 -1.3
872,052 - LRK53_RS03695 0.73 -2.4
872,052 - LRK53_RS03695 0.73 -3.2
872,052 - LRK53_RS03695 0.73 -0.8
872,225 - LRK53_RS03695 0.86 -1.0
872,225 - LRK53_RS03695 0.86 +0.0
872,276 + LRK53_RS03695 0.89 -1.0
872,276 + LRK53_RS03695 0.89 -0.6
872,276 + LRK53_RS03695 0.89 +0.0
872,276 + LRK53_RS03695 0.89 -2.8
872,276 + LRK53_RS03695 0.89 -0.6
872,277 - LRK53_RS03695 0.90 -2.2
872,277 - LRK53_RS03695 0.90 -0.1
872,277 - LRK53_RS03695 0.90 +0.6
872,277 - LRK53_RS03695 0.90 -1.2
872,277 - LRK53_RS03695 0.90 -0.3
872,277 - LRK53_RS03695 0.90 +2.0
872,277 - LRK53_RS03695 0.90 -0.8
872,277 - LRK53_RS03695 0.90 -1.6
872,277 - LRK53_RS03695 0.90 +1.0
872,277 - LRK53_RS03695 0.90 +2.0
872,358 + +0.4
872,358 + -3.3
872,358 + -1.9
872,358 + -2.8
872,359 - -0.3
872,359 - -1.6
872,359 - -1.3
872,359 - -0.6
872,359 - +0.0
872,449 + -2.2
872,449 + -0.8
872,449 + -0.6
872,554 + -0.8

Or see this region's nucleotide sequence