Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03360 and LRK53_RS03365 are separated by 180 nucleotides LRK53_RS03365 and LRK53_RS03370 are separated by 148 nucleotides LRK53_RS03370 and LRK53_RS03375 are separated by 279 nucleotides
LRK53_RS03360: LRK53_RS03360 - P-II family nitrogen regulator, at 796,695 to 797,033
_RS03360
LRK53_RS03365: LRK53_RS03365 - accessory factor UbiK family protein, at 797,214 to 797,474
_RS03365
LRK53_RS03370: LRK53_RS03370 - YifB family Mg chelatase-like AAA ATPase, at 797,623 to 799,116
_RS03370
LRK53_RS03375: LRK53_RS03375 - isocitrate lyase, at 799,396 to 800,694
_RS03375
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.696 kb on + strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.897 kb on + strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 797.052 kb on + strand at 797.052 kb on + strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.132 kb on - strand at 797.150 kb on + strand at 797.150 kb on + strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.181 kb on - strand at 797.181 kb on - strand at 797.181 kb on - strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.187 kb on + strand at 797.187 kb on + strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.396 kb on + strand, within LRK53_RS03365 at 797.538 kb on + strand at 797.538 kb on + strand at 797.538 kb on + strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.800 kb on + strand, within LRK53_RS03370 at 798.676 kb on + strand, within LRK53_RS03370 at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.118 kb on + strand at 799.118 kb on + strand at 799.118 kb on + strand at 799.119 kb on - strand at 799.119 kb on - strand at 799.119 kb on - strand at 799.229 kb on - strand at 799.232 kb on + strand at 799.233 kb on - strand at 799.252 kb on + strand at 799.252 kb on + strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.311 kb on - strand at 799.311 kb on - strand at 799.499 kb on + strand at 799.634 kb on + strand, within LRK53_RS03375 at 799.634 kb on + strand, within LRK53_RS03375 at 799.634 kb on + strand, within LRK53_RS03375 at 799.634 kb on + strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.680 kb on - strand, within LRK53_RS03375 at 799.680 kb on - strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.868 kb on + strand, within LRK53_RS03375 at 799.869 kb on - strand, within LRK53_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 796,645 + +2.0 796,645 + -0.2 796,645 + +1.0 796,645 + +0.5 796,645 + +1.0 796,645 + +0.2 796,645 + -1.3 796,645 + -1.6 796,645 + -2.1 796,645 + +0.6 796,645 + -1.0 796,646 - -1.3 796,646 - -2.7 796,646 - -1.9 796,646 - +1.0 796,646 - -2.2 796,646 - -1.6 796,646 - -1.2 796,646 - +1.0 796,696 + -0.5 796,697 - -2.4 796,697 - -0.4 796,697 - -2.2 796,882 + LRK53_RS03360 0.55 +1.0 796,882 + LRK53_RS03360 0.55 -0.6 796,882 + LRK53_RS03360 0.55 +1.3 796,883 - LRK53_RS03360 0.55 -0.1 796,883 - LRK53_RS03360 0.55 -0.6 796,897 + LRK53_RS03360 0.60 -1.6 796,898 - LRK53_RS03360 0.60 +1.0 796,898 - LRK53_RS03360 0.60 -1.2 797,052 + -0.7 797,052 + -0.9 797,053 - -1.6 797,053 - -0.6 797,053 - -0.7 797,119 + -0.6 797,119 + -0.7 797,119 + -1.8 797,119 + -0.7 797,120 - -0.0 797,120 - -1.0 797,120 - -1.0 797,120 - -0.8 797,120 - +2.6 797,120 - -0.0 797,120 - -0.3 797,120 - +1.6 797,131 + -0.6 797,131 + -1.1 797,131 + +0.3 797,132 - -1.0 797,150 + +0.4 797,150 + -0.0 797,151 - -0.9 797,151 - -0.5 797,151 - -1.7 797,180 + -0.9 797,180 + -2.2 797,180 + -1.0 797,180 + -1.0 797,180 + -0.6 797,180 + -0.3 797,180 + -1.0 797,180 + +0.2 797,180 + +1.0 797,181 - -0.4 797,181 - +2.6 797,181 - +1.3 797,183 + -2.9 797,183 + -0.3 797,183 + -0.2 797,183 + -1.3 797,183 + -0.9 797,184 - +2.0 797,184 - +0.4 797,184 - +3.0 797,184 - -0.0 797,184 - -0.0 797,184 - -0.9 797,184 - +0.7 797,184 - +0.7 797,187 + -1.0 797,187 + -2.3 797,188 - +0.3 797,188 - -1.3 797,188 - -0.0 797,222 + -1.2 797,222 + -1.6 797,222 + -0.6 797,222 + -0.2 797,222 + -0.0 797,223 - -0.6 797,223 - -1.7 797,223 - -0.8 797,223 - -0.0 797,396 + LRK53_RS03365 0.70 +0.4 797,538 + -0.5 797,538 + -0.6 797,538 + -1.3 797,539 - -1.3 797,539 - -2.0 797,539 - -1.3 797,539 - -1.3 797,542 + -0.7 797,542 + +0.4 797,542 + -1.1 797,542 + -1.5 797,543 - -1.3 797,543 - -0.0 797,543 - -1.3 797,543 - +0.1 797,690 + -1.3 797,690 + +1.0 797,690 + -1.6 797,690 + -1.6 797,690 + -1.2 797,690 + -0.6 797,690 + +1.0 797,690 + -0.3 797,690 + -1.1 797,690 + +0.1 797,691 - -0.0 797,691 - +1.0 797,691 - +1.0 797,691 - +1.6 797,691 - +0.3 797,691 - +1.0 797,691 - -0.2 797,691 - -1.5 797,691 - -1.0 797,691 - +0.4 797,691 - -0.6 797,800 + LRK53_RS03370 0.12 -3.3 798,676 + LRK53_RS03370 0.70 -1.4 799,009 + -0.8 799,009 + +0.3 799,009 + -1.6 799,009 + -1.0 799,009 + -0.0 799,009 + +1.3 799,010 - -0.2 799,010 - -0.8 799,010 - -0.8 799,010 - +1.0 799,010 - -1.0 799,114 + -1.0 799,114 + -1.0 799,114 + +0.6 799,114 + -1.2 799,114 + -0.0 799,114 + -0.0 799,114 + -0.1 799,115 - -0.6 799,115 - -0.6 799,115 - +1.6 799,115 - -0.3 799,115 - -0.0 799,118 + +0.2 799,118 + -2.3 799,118 + -1.3 799,119 - -1.2 799,119 - -0.6 799,119 - +1.0 799,229 - +2.0 799,232 + +0.6 799,233 - -1.0 799,252 + -1.6 799,252 + -0.0 799,253 - -1.2 799,253 - -1.0 799,253 - -1.3 799,253 - +0.7 799,253 - -0.2 799,253 - +1.0 799,253 - -1.0 799,253 - -1.0 799,253 - -1.6 799,311 - +0.3 799,311 - -0.0 799,499 + -0.3 799,634 + LRK53_RS03375 0.18 -1.8 799,634 + LRK53_RS03375 0.18 -0.6 799,634 + LRK53_RS03375 0.18 +1.6 799,634 + LRK53_RS03375 0.18 -0.6 799,635 - LRK53_RS03375 0.18 -0.6 799,635 - LRK53_RS03375 0.18 -0.3 799,635 - LRK53_RS03375 0.18 -0.6 799,679 + LRK53_RS03375 0.22 +1.0 799,679 + LRK53_RS03375 0.22 -0.8 799,679 + LRK53_RS03375 0.22 -1.3 799,679 + LRK53_RS03375 0.22 -0.2 799,680 - LRK53_RS03375 0.22 -2.0 799,680 - LRK53_RS03375 0.22 -1.2 799,766 + LRK53_RS03375 0.28 -1.3 799,766 + LRK53_RS03375 0.28 -0.6 799,766 + LRK53_RS03375 0.28 -0.0 799,766 + LRK53_RS03375 0.28 -0.0 799,767 - LRK53_RS03375 0.29 -1.3 799,767 - LRK53_RS03375 0.29 -1.0 799,767 - LRK53_RS03375 0.29 +0.4 799,767 - LRK53_RS03375 0.29 +2.6 799,868 + LRK53_RS03375 0.36 -1.0 799,869 - LRK53_RS03375 0.36 -1.2
Or see this region's nucleotide sequence