Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03255 and LRK53_RS03260 are separated by 87 nucleotides LRK53_RS03260 and LRK53_RS03265 overlap by 4 nucleotides
LRK53_RS03255: LRK53_RS03255 - TonB-dependent receptor, at 764,885 to 767,176
_RS03255
LRK53_RS03260: LRK53_RS03260 - lysoplasmalogenase, at 767,264 to 767,986
_RS03260
LRK53_RS03265: LRK53_RS03265 - sterol desaturase family protein, at 767,983 to 769,251
_RS03265
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.331 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.389 kb on - strand, within LRK53_RS03255 at 766.389 kb on - strand, within LRK53_RS03255 at 766.424 kb on + strand, within LRK53_RS03255 at 766.589 kb on + strand, within LRK53_RS03255 at 766.589 kb on + strand, within LRK53_RS03255 at 766.590 kb on - strand, within LRK53_RS03255 at 766.664 kb on + strand, within LRK53_RS03255 at 766.742 kb on + strand, within LRK53_RS03255 at 766.742 kb on + strand, within LRK53_RS03255 at 766.743 kb on - strand, within LRK53_RS03255 at 766.758 kb on - strand, within LRK53_RS03255 at 766.773 kb on - strand, within LRK53_RS03255 at 766.785 kb on - strand, within LRK53_RS03255 at 766.785 kb on - strand, within LRK53_RS03255 at 766.907 kb on + strand, within LRK53_RS03255 at 766.907 kb on + strand, within LRK53_RS03255 at 766.908 kb on - strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.923 kb on - strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.951 kb on - strand at 766.958 kb on + strand at 766.959 kb on - strand at 766.959 kb on - strand at 767.060 kb on + strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.063 kb on + strand at 767.063 kb on + strand at 767.064 kb on - strand at 767.064 kb on - strand at 767.114 kb on + strand at 767.114 kb on + strand at 767.114 kb on + strand at 767.115 kb on - strand at 767.304 kb on + strand at 767.305 kb on - strand at 767.493 kb on + strand, within LRK53_RS03260 at 767.493 kb on + strand, within LRK53_RS03260 at 767.494 kb on - strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.736 kb on - strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.795 kb on - strand, within LRK53_RS03260 at 767.795 kb on - strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.842 kb on - strand, within LRK53_RS03260 at 767.842 kb on - strand, within LRK53_RS03260 at 767.918 kb on + strand at 767.918 kb on + strand at 767.918 kb on + strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.922 kb on - strand at 768.082 kb on + strand at 768.082 kb on + strand at 768.172 kb on + strand, within LRK53_RS03265 at 768.172 kb on + strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.253 kb on + strand, within LRK53_RS03265 at 768.253 kb on + strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.269 kb on - strand, within LRK53_RS03265 at 768.269 kb on - strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.344 kb on - strand, within LRK53_RS03265 at 768.344 kb on - strand, within LRK53_RS03265 at 768.403 kb on + strand, within LRK53_RS03265 at 768.403 kb on + strand, within LRK53_RS03265 at 768.404 kb on - strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.441 kb on - strand, within LRK53_RS03265 at 768.472 kb on + strand, within LRK53_RS03265 at 768.472 kb on + strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.577 kb on + strand, within LRK53_RS03265 at 768.592 kb on + strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.668 kb on - strand, within LRK53_RS03265 at 768.668 kb on - strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.899 kb on - strand, within LRK53_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 766,331 + LRK53_RS03255 0.63 -0.0 766,388 + LRK53_RS03255 0.66 -0.6 766,388 + LRK53_RS03255 0.66 -1.8 766,388 + LRK53_RS03255 0.66 +0.3 766,389 - LRK53_RS03255 0.66 -0.0 766,389 - LRK53_RS03255 0.66 -1.4 766,424 + LRK53_RS03255 0.67 -0.7 766,589 + LRK53_RS03255 0.74 +1.4 766,589 + LRK53_RS03255 0.74 -0.4 766,590 - LRK53_RS03255 0.74 -2.3 766,664 + LRK53_RS03255 0.78 -1.0 766,742 + LRK53_RS03255 0.81 +2.0 766,742 + LRK53_RS03255 0.81 -0.9 766,743 - LRK53_RS03255 0.81 -0.0 766,758 - LRK53_RS03255 0.82 -1.6 766,773 - LRK53_RS03255 0.82 -0.6 766,785 - LRK53_RS03255 0.83 -0.0 766,785 - LRK53_RS03255 0.83 -0.6 766,907 + LRK53_RS03255 0.88 -1.6 766,907 + LRK53_RS03255 0.88 +2.0 766,908 - LRK53_RS03255 0.88 +0.4 766,922 + LRK53_RS03255 0.89 -0.4 766,922 + LRK53_RS03255 0.89 -0.6 766,922 + LRK53_RS03255 0.89 -1.6 766,923 - LRK53_RS03255 0.89 +1.0 766,925 + LRK53_RS03255 0.89 +1.0 766,925 + LRK53_RS03255 0.89 -0.3 766,925 + LRK53_RS03255 0.89 -1.6 766,925 + LRK53_RS03255 0.89 -0.2 766,925 + LRK53_RS03255 0.89 +2.0 766,925 + LRK53_RS03255 0.89 +0.4 766,925 + LRK53_RS03255 0.89 -0.6 766,925 + LRK53_RS03255 0.89 -0.6 766,925 + LRK53_RS03255 0.89 -0.3 766,925 + LRK53_RS03255 0.89 -1.0 766,925 + LRK53_RS03255 0.89 +1.0 766,925 + LRK53_RS03255 0.89 -0.0 766,926 - LRK53_RS03255 0.89 -0.6 766,926 - LRK53_RS03255 0.89 -0.2 766,926 - LRK53_RS03255 0.89 -0.6 766,926 - LRK53_RS03255 0.89 -0.0 766,926 - LRK53_RS03255 0.89 -0.3 766,926 - LRK53_RS03255 0.89 -0.5 766,926 - LRK53_RS03255 0.89 -0.0 766,926 - LRK53_RS03255 0.89 -1.8 766,926 - LRK53_RS03255 0.89 -2.0 766,926 - LRK53_RS03255 0.89 -0.9 766,926 - LRK53_RS03255 0.89 -0.6 766,926 - LRK53_RS03255 0.89 -0.2 766,931 + LRK53_RS03255 0.89 -0.4 766,931 + LRK53_RS03255 0.89 -1.0 766,931 + LRK53_RS03255 0.89 -0.6 766,931 + LRK53_RS03255 0.89 +1.0 766,931 + LRK53_RS03255 0.89 -0.6 766,931 + LRK53_RS03255 0.89 -1.8 766,931 + LRK53_RS03255 0.89 -2.5 766,931 + LRK53_RS03255 0.89 +1.0 766,932 - LRK53_RS03255 0.89 -1.3 766,932 - LRK53_RS03255 0.89 +0.4 766,932 - LRK53_RS03255 0.89 -1.0 766,932 - LRK53_RS03255 0.89 -1.2 766,932 - LRK53_RS03255 0.89 +0.1 766,932 - LRK53_RS03255 0.89 -1.3 766,932 - LRK53_RS03255 0.89 +0.6 766,932 - LRK53_RS03255 0.89 -2.9 766,932 - LRK53_RS03255 0.89 -1.5 766,932 - LRK53_RS03255 0.89 -0.6 766,932 - LRK53_RS03255 0.89 -0.6 766,932 - LRK53_RS03255 0.89 +1.0 766,932 - LRK53_RS03255 0.89 -0.0 766,932 - LRK53_RS03255 0.89 -1.7 766,951 - -1.0 766,958 + -0.0 766,959 - -1.1 766,959 - +1.0 767,060 + -0.4 767,061 - -0.8 767,061 - -0.7 767,061 - -1.3 767,061 - -2.1 767,061 - -0.6 767,063 + +0.4 767,063 + +1.0 767,064 - -1.3 767,064 - -2.2 767,114 + +1.0 767,114 + -0.8 767,114 + +0.4 767,115 - -0.0 767,304 + +2.0 767,305 - -0.2 767,493 + LRK53_RS03260 0.32 -1.6 767,493 + LRK53_RS03260 0.32 -0.6 767,494 - LRK53_RS03260 0.32 -1.7 767,529 + LRK53_RS03260 0.37 -0.6 767,529 + LRK53_RS03260 0.37 -0.6 767,529 + LRK53_RS03260 0.37 -1.4 767,529 + LRK53_RS03260 0.37 -0.4 767,529 + LRK53_RS03260 0.37 +0.7 767,529 + LRK53_RS03260 0.37 -0.6 767,529 + LRK53_RS03260 0.37 -1.8 767,529 + LRK53_RS03260 0.37 -0.0 767,529 + LRK53_RS03260 0.37 +1.0 767,530 - LRK53_RS03260 0.37 -1.3 767,530 - LRK53_RS03260 0.37 +1.0 767,530 - LRK53_RS03260 0.37 +1.0 767,530 - LRK53_RS03260 0.37 -1.3 767,530 - LRK53_RS03260 0.37 +2.6 767,530 - LRK53_RS03260 0.37 -0.1 767,530 - LRK53_RS03260 0.37 -1.3 767,736 - LRK53_RS03260 0.65 -0.8 767,794 + LRK53_RS03260 0.73 -1.4 767,794 + LRK53_RS03260 0.73 -0.0 767,794 + LRK53_RS03260 0.73 -0.8 767,794 + LRK53_RS03260 0.73 -2.0 767,795 - LRK53_RS03260 0.73 -1.6 767,795 - LRK53_RS03260 0.73 -1.2 767,841 + LRK53_RS03260 0.80 +1.0 767,841 + LRK53_RS03260 0.80 +1.0 767,841 + LRK53_RS03260 0.80 -0.4 767,841 + LRK53_RS03260 0.80 -2.0 767,842 - LRK53_RS03260 0.80 -0.6 767,842 - LRK53_RS03260 0.80 +1.0 767,918 + -0.6 767,918 + -1.3 767,918 + +0.7 767,919 - -0.6 767,919 - -1.5 767,919 - +1.0 767,919 - +1.0 767,921 + -0.0 767,921 + -0.0 767,921 + -0.6 767,921 + -0.0 767,922 - -0.0 768,082 + -0.0 768,082 + +0.2 768,172 + LRK53_RS03265 0.15 -0.0 768,172 + LRK53_RS03265 0.15 +1.0 768,173 - LRK53_RS03265 0.15 -0.6 768,173 - LRK53_RS03265 0.15 +1.0 768,173 - LRK53_RS03265 0.15 -0.5 768,173 - LRK53_RS03265 0.15 +0.5 768,173 - LRK53_RS03265 0.15 +2.0 768,253 + LRK53_RS03265 0.21 -0.4 768,253 + LRK53_RS03265 0.21 -0.6 768,254 - LRK53_RS03265 0.21 +1.3 768,254 - LRK53_RS03265 0.21 -0.6 768,254 - LRK53_RS03265 0.21 -0.0 768,265 + LRK53_RS03265 0.22 -0.6 768,265 + LRK53_RS03265 0.22 +0.1 768,265 + LRK53_RS03265 0.22 -0.1 768,266 - LRK53_RS03265 0.22 -0.6 768,266 - LRK53_RS03265 0.22 -0.0 768,266 - LRK53_RS03265 0.22 -0.6 768,266 - LRK53_RS03265 0.22 -0.6 768,266 - LRK53_RS03265 0.22 -1.0 768,268 + LRK53_RS03265 0.22 -0.0 768,268 + LRK53_RS03265 0.22 +1.6 768,268 + LRK53_RS03265 0.22 -0.6 768,268 + LRK53_RS03265 0.22 -1.6 768,269 - LRK53_RS03265 0.23 +1.0 768,269 - LRK53_RS03265 0.23 -0.3 768,343 + LRK53_RS03265 0.28 -1.3 768,343 + LRK53_RS03265 0.28 -1.6 768,343 + LRK53_RS03265 0.28 -1.2 768,343 + LRK53_RS03265 0.28 +0.6 768,343 + LRK53_RS03265 0.28 +2.6 768,344 - LRK53_RS03265 0.28 +0.2 768,344 - LRK53_RS03265 0.28 +1.0 768,403 + LRK53_RS03265 0.33 -2.3 768,403 + LRK53_RS03265 0.33 -0.9 768,404 - LRK53_RS03265 0.33 -0.2 768,440 + LRK53_RS03265 0.36 -1.8 768,440 + LRK53_RS03265 0.36 -0.7 768,440 + LRK53_RS03265 0.36 +0.1 768,440 + LRK53_RS03265 0.36 +0.4 768,441 - LRK53_RS03265 0.36 -1.0 768,472 + LRK53_RS03265 0.39 -1.0 768,472 + LRK53_RS03265 0.39 -1.0 768,473 - LRK53_RS03265 0.39 -1.0 768,473 - LRK53_RS03265 0.39 -0.6 768,473 - LRK53_RS03265 0.39 -2.0 768,473 - LRK53_RS03265 0.39 +0.3 768,577 + LRK53_RS03265 0.47 +0.2 768,592 + LRK53_RS03265 0.48 -1.0 768,593 - LRK53_RS03265 0.48 -0.1 768,593 - LRK53_RS03265 0.48 -0.0 768,593 - LRK53_RS03265 0.48 -1.6 768,593 - LRK53_RS03265 0.48 -1.0 768,665 + LRK53_RS03265 0.54 -0.9 768,665 + LRK53_RS03265 0.54 -1.0 768,665 + LRK53_RS03265 0.54 -0.0 768,667 + LRK53_RS03265 0.54 -0.3 768,667 + LRK53_RS03265 0.54 -1.2 768,667 + LRK53_RS03265 0.54 +0.4 768,667 + LRK53_RS03265 0.54 -0.3 768,668 - LRK53_RS03265 0.54 +2.0 768,668 - LRK53_RS03265 0.54 -0.0 768,724 + LRK53_RS03265 0.58 -0.0 768,724 + LRK53_RS03265 0.58 -0.7 768,724 + LRK53_RS03265 0.58 -0.1 768,724 + LRK53_RS03265 0.58 -0.9 768,724 + LRK53_RS03265 0.58 -1.6 768,725 - LRK53_RS03265 0.58 -1.6 768,725 - LRK53_RS03265 0.58 -1.8 768,725 - LRK53_RS03265 0.58 -1.2 768,725 - LRK53_RS03265 0.58 +1.0 768,725 - LRK53_RS03265 0.58 -1.8 768,898 + LRK53_RS03265 0.72 -0.3 768,898 + LRK53_RS03265 0.72 -2.7 768,898 + LRK53_RS03265 0.72 -0.6 768,898 + LRK53_RS03265 0.72 +1.0 768,898 + LRK53_RS03265 0.72 -0.0 768,899 - LRK53_RS03265 0.72 -1.3
Or see this region's nucleotide sequence