Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01920 and LRK53_RS01925 are separated by 84 nucleotides LRK53_RS01925 and LRK53_RS01930 are separated by 386 nucleotides LRK53_RS01930 and LRK53_RS01935 are separated by 11 nucleotides LRK53_RS01935 and LRK53_RS01940 are separated by 46 nucleotides LRK53_RS01940 and LRK53_RS01945 overlap by 14 nucleotides
LRK53_RS01920: LRK53_RS01920 - regulatory signaling modulator protein AmpE, at 449,489 to 450,358
_RS01920
LRK53_RS01925: LRK53_RS01925 - hypothetical protein, at 450,443 to 450,814
_RS01925
LRK53_RS01930: LRK53_RS01930 - NAD(+) diphosphatase, at 451,201 to 452,172
_RS01930
LRK53_RS01935: LRK53_RS01935 - iron-sulfur cluster insertion protein ErpA, at 452,184 to 452,552
_RS01935
LRK53_RS01940: LRK53_RS01940 - polymer-forming cytoskeletal protein, at 452,599 to 453,027
_RS01940
LRK53_RS01945: LRK53_RS01945 - hypothetical protein, at 453,014 to 453,769
_RS01945
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 450.242 kb on - strand, within LRK53_RS01920 at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.676 kb on + strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.974 kb on + strand at 451.109 kb on + strand at 451.109 kb on + strand at 451.277 kb on + strand at 451.277 kb on + strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.463 kb on + strand, within LRK53_RS01930 at 451.463 kb on + strand, within LRK53_RS01930 at 451.565 kb on + strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930 at 451.919 kb on + strand, within LRK53_RS01930 at 451.919 kb on + strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.927 kb on - strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.046 kb on - strand, within LRK53_RS01930 at 452.046 kb on - strand, within LRK53_RS01930 at 452.534 kb on + strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.592 kb on + strand at 452.592 kb on + strand at 452.592 kb on + strand at 452.720 kb on + strand, within LRK53_RS01940 at 452.721 kb on - strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.863 kb on + strand, within LRK53_RS01940 at 452.863 kb on + strand, within LRK53_RS01940 at 452.864 kb on - strand, within LRK53_RS01940 at 453.015 kb on + strand at 453.015 kb on + strand at 453.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 450,242 - LRK53_RS01920 0.87 -1.3 450,392 + -2.1 450,392 + +0.0 450,392 + -2.3 450,392 + +0.0 450,392 + +0.2 450,392 + +1.0 450,392 + -0.3 450,392 + +0.8 450,392 + -1.8 450,392 + -1.2 450,392 + -1.1 450,392 + -2.0 450,392 + +1.6 450,392 + +0.0 450,392 + +1.0 450,392 + +1.0 450,393 - +1.0 450,393 - -0.7 450,393 - +0.2 450,393 - -1.3 450,393 - +0.0 450,393 - +0.0 450,393 - -0.6 450,393 - +0.2 450,393 - +1.6 450,393 - -1.7 450,393 - -1.1 450,393 - -0.8 450,393 - +0.4 450,393 - -1.9 450,393 - -1.0 450,600 + LRK53_RS01925 0.42 -1.6 450,600 + LRK53_RS01925 0.42 -0.6 450,600 + LRK53_RS01925 0.42 -2.2 450,600 + LRK53_RS01925 0.42 +0.2 450,600 + LRK53_RS01925 0.42 -2.0 450,600 + LRK53_RS01925 0.42 -0.6 450,601 - LRK53_RS01925 0.42 +0.6 450,601 - LRK53_RS01925 0.42 -0.2 450,601 - LRK53_RS01925 0.42 -0.4 450,601 - LRK53_RS01925 0.42 -1.3 450,601 - LRK53_RS01925 0.42 -1.7 450,601 - LRK53_RS01925 0.42 -0.4 450,601 - LRK53_RS01925 0.42 -1.6 450,601 - LRK53_RS01925 0.42 +0.0 450,601 - LRK53_RS01925 0.42 -1.6 450,601 - LRK53_RS01925 0.42 +0.3 450,676 + LRK53_RS01925 0.63 -0.5 450,677 - LRK53_RS01925 0.63 -0.6 450,677 - LRK53_RS01925 0.63 +0.0 450,974 + +2.4 451,109 + +0.4 451,109 + -1.1 451,277 + +0.0 451,277 + +0.8 451,278 - -1.4 451,278 - -0.7 451,278 - -1.0 451,278 - -0.8 451,278 - -1.0 451,278 - -1.6 451,463 + LRK53_RS01930 0.27 -0.7 451,463 + LRK53_RS01930 0.27 -0.0 451,565 + LRK53_RS01930 0.37 -1.4 451,566 - LRK53_RS01930 0.38 +0.0 451,566 - LRK53_RS01930 0.38 -0.1 451,781 + LRK53_RS01930 0.60 -1.0 451,781 + LRK53_RS01930 0.60 +0.4 451,781 + LRK53_RS01930 0.60 +0.0 451,781 + LRK53_RS01930 0.60 -1.0 451,781 + LRK53_RS01930 0.60 -0.9 451,782 - LRK53_RS01930 0.60 -1.1 451,782 - LRK53_RS01930 0.60 -1.6 451,919 + LRK53_RS01930 0.74 +0.2 451,919 + LRK53_RS01930 0.74 +0.0 451,920 - LRK53_RS01930 0.74 -1.1 451,920 - LRK53_RS01930 0.74 -0.5 451,920 - LRK53_RS01930 0.74 -1.3 451,920 - LRK53_RS01930 0.74 -2.0 451,920 - LRK53_RS01930 0.74 +1.0 451,927 - LRK53_RS01930 0.75 +1.4 452,045 + LRK53_RS01930 0.87 +0.4 452,045 + LRK53_RS01930 0.87 -1.5 452,045 + LRK53_RS01930 0.87 -0.6 452,045 + LRK53_RS01930 0.87 -1.7 452,045 + LRK53_RS01930 0.87 +0.3 452,045 + LRK53_RS01930 0.87 -0.3 452,045 + LRK53_RS01930 0.87 -0.8 452,045 + LRK53_RS01930 0.87 +2.0 452,046 - LRK53_RS01930 0.87 -1.5 452,046 - LRK53_RS01930 0.87 +0.5 452,534 + -0.6 452,535 - +1.0 452,535 - +0.0 452,582 + -1.0 452,582 + -0.8 452,582 + +1.6 452,582 + -2.1 452,582 + -1.0 452,582 + -0.3 452,582 + -1.1 452,582 + -2.0 452,582 + -1.3 452,582 + +0.0 452,582 + -0.6 452,582 + +0.0 452,583 - -2.2 452,583 - -0.7 452,583 - +1.0 452,583 - +1.0 452,583 - -0.3 452,583 - +1.0 452,583 - -2.0 452,583 - -0.6 452,592 + -0.5 452,592 + -1.8 452,592 + -0.6 452,720 + LRK53_RS01940 0.28 -1.8 452,721 - LRK53_RS01940 0.28 +0.0 452,773 + LRK53_RS01940 0.41 +1.0 452,773 + LRK53_RS01940 0.41 -1.0 452,773 + LRK53_RS01940 0.41 -1.0 452,773 + LRK53_RS01940 0.41 -0.6 452,773 + LRK53_RS01940 0.41 -3.1 452,773 + LRK53_RS01940 0.41 -0.6 452,773 + LRK53_RS01940 0.41 -1.1 452,773 + LRK53_RS01940 0.41 +0.8 452,773 + LRK53_RS01940 0.41 +0.2 452,773 + LRK53_RS01940 0.41 -1.0 452,773 + LRK53_RS01940 0.41 +0.0 452,773 + LRK53_RS01940 0.41 -0.2 452,773 + LRK53_RS01940 0.41 -0.6 452,774 - LRK53_RS01940 0.41 -0.6 452,774 - LRK53_RS01940 0.41 -0.6 452,774 - LRK53_RS01940 0.41 -1.4 452,774 - LRK53_RS01940 0.41 -0.8 452,774 - LRK53_RS01940 0.41 +0.0 452,774 - LRK53_RS01940 0.41 -0.6 452,774 - LRK53_RS01940 0.41 -1.1 452,774 - LRK53_RS01940 0.41 -0.6 452,774 - LRK53_RS01940 0.41 -0.8 452,863 + LRK53_RS01940 0.62 +1.0 452,863 + LRK53_RS01940 0.62 -1.6 452,864 - LRK53_RS01940 0.62 -0.3 453,015 + -0.1 453,015 + +0.3 453,016 - -0.3
Or see this region's nucleotide sequence