Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00605 and LRK53_RS00610 are separated by 314 nucleotides LRK53_RS00610 and LRK53_RS00615 overlap by 1 nucleotides
LRK53_RS00605: LRK53_RS00605 - cytochrome P450, at 136,110 to 137,261
_RS00605
LRK53_RS00610: LRK53_RS00610 - LytTR family DNA-binding domain-containing protein, at 137,576 to 138,280
_RS00610
LRK53_RS00615: LRK53_RS00615 - histidine kinase, at 138,280 to 139,332
_RS00615
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 136.636 kb on + strand, within LRK53_RS00605 at 136.636 kb on + strand, within LRK53_RS00605 at 136.636 kb on + strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.677 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.259 kb on + strand at 137.259 kb on + strand at 137.259 kb on + strand at 137.259 kb on + strand at 137.260 kb on - strand at 137.329 kb on - strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.898 kb on + strand, within LRK53_RS00610 at 137.898 kb on + strand, within LRK53_RS00610 at 137.899 kb on - strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 138.036 kb on + strand, within LRK53_RS00610 at 138.362 kb on + strand at 138.362 kb on + strand at 138.368 kb on + strand at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.651 kb on - strand, within LRK53_RS00615 at 138.651 kb on - strand, within LRK53_RS00615 at 138.826 kb on - strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 139.068 kb on - strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 136,636 + LRK53_RS00605 0.46 -0.6 136,636 + LRK53_RS00605 0.46 -0.6 136,636 + LRK53_RS00605 0.46 +0.7 136,637 - LRK53_RS00605 0.46 -0.5 136,637 - LRK53_RS00605 0.46 -1.4 136,637 - LRK53_RS00605 0.46 +0.6 136,637 - LRK53_RS00605 0.46 -0.7 136,637 - LRK53_RS00605 0.46 -1.7 136,637 - LRK53_RS00605 0.46 -1.2 136,637 - LRK53_RS00605 0.46 +0.1 136,677 + LRK53_RS00605 0.49 +0.1 137,073 + LRK53_RS00605 0.84 -1.4 137,073 + LRK53_RS00605 0.84 +1.1 137,073 + LRK53_RS00605 0.84 +0.1 137,073 + LRK53_RS00605 0.84 -1.5 137,073 + LRK53_RS00605 0.84 -0.5 137,073 + LRK53_RS00605 0.84 -0.7 137,073 + LRK53_RS00605 0.84 -2.2 137,073 + LRK53_RS00605 0.84 -0.5 137,074 - LRK53_RS00605 0.84 -0.2 137,074 - LRK53_RS00605 0.84 -1.9 137,074 - LRK53_RS00605 0.84 -0.1 137,074 - LRK53_RS00605 0.84 -0.5 137,074 - LRK53_RS00605 0.84 +0.1 137,074 - LRK53_RS00605 0.84 -0.9 137,074 - LRK53_RS00605 0.84 +1.1 137,074 - LRK53_RS00605 0.84 +0.1 137,074 - LRK53_RS00605 0.84 -0.5 137,074 - LRK53_RS00605 0.84 -0.2 137,074 - LRK53_RS00605 0.84 +2.1 137,074 - LRK53_RS00605 0.84 -1.7 137,074 - LRK53_RS00605 0.84 +1.1 137,074 - LRK53_RS00605 0.84 -2.2 137,074 - LRK53_RS00605 0.84 -1.0 137,074 - LRK53_RS00605 0.84 -1.5 137,074 - LRK53_RS00605 0.84 +1.1 137,085 + LRK53_RS00605 0.85 +0.1 137,085 + LRK53_RS00605 0.85 -0.8 137,085 + LRK53_RS00605 0.85 -0.9 137,085 + LRK53_RS00605 0.85 -0.9 137,085 + LRK53_RS00605 0.85 +1.1 137,085 + LRK53_RS00605 0.85 -1.1 137,086 - LRK53_RS00605 0.85 +0.1 137,086 - LRK53_RS00605 0.85 +0.1 137,086 - LRK53_RS00605 0.85 -2.1 137,259 + +0.1 137,259 + -2.1 137,259 + +0.5 137,259 + -0.5 137,260 - -1.4 137,329 - +1.1 137,480 + -0.5 137,480 + +0.8 137,480 + -2.1 137,480 + -1.2 137,480 + -0.2 137,480 + -1.4 137,481 - -0.3 137,481 - -2.1 137,481 - -0.5 137,481 - -0.9 137,481 - -0.1 137,481 - -0.4 137,481 - -1.4 137,481 - -1.4 137,532 + -1.5 137,532 + -2.2 137,532 + -1.5 137,532 + -0.2 137,532 + -1.1 137,532 + -1.7 137,532 + +0.1 137,532 + +1.1 137,532 + +3.1 137,532 + -0.8 137,532 + -0.6 137,532 + +1.1 137,532 + -0.5 137,532 + -1.4 137,532 + -1.8 137,533 - -0.2 137,533 - +1.1 137,533 - -1.8 137,533 - +0.5 137,533 - -2.0 137,533 - -0.5 137,533 - -0.9 137,533 - -1.3 137,533 - +1.1 137,533 - -1.9 137,533 - +1.1 137,533 - +0.1 137,533 - -0.1 137,533 - -0.2 137,533 - +0.1 137,540 + -0.7 137,540 + -0.7 137,540 + -0.7 137,540 + -0.3 137,540 + -1.7 137,540 + +0.1 137,540 + +1.1 137,541 - -0.5 137,541 - -1.2 137,541 - +1.1 137,541 - -0.5 137,541 - -0.2 137,541 - -0.5 137,820 + LRK53_RS00610 0.35 -0.5 137,820 + LRK53_RS00610 0.35 +0.1 137,820 + LRK53_RS00610 0.35 -0.1 137,820 + LRK53_RS00610 0.35 -0.9 137,820 + LRK53_RS00610 0.35 -0.1 137,820 + LRK53_RS00610 0.35 -0.9 137,820 + LRK53_RS00610 0.35 -0.8 137,820 + LRK53_RS00610 0.35 -0.5 137,820 + LRK53_RS00610 0.35 -0.5 137,820 + LRK53_RS00610 0.35 +0.1 137,820 + LRK53_RS00610 0.35 -0.2 137,821 - LRK53_RS00610 0.35 -0.1 137,821 - LRK53_RS00610 0.35 +0.1 137,821 - LRK53_RS00610 0.35 +0.3 137,821 - LRK53_RS00610 0.35 -1.2 137,821 - LRK53_RS00610 0.35 -1.5 137,821 - LRK53_RS00610 0.35 -1.4 137,821 - LRK53_RS00610 0.35 -2.2 137,821 - LRK53_RS00610 0.35 -2.0 137,821 - LRK53_RS00610 0.35 -1.5 137,821 - LRK53_RS00610 0.35 -2.4 137,821 - LRK53_RS00610 0.35 -1.9 137,821 - LRK53_RS00610 0.35 -1.1 137,898 + LRK53_RS00610 0.46 +0.1 137,898 + LRK53_RS00610 0.46 +0.1 137,899 - LRK53_RS00610 0.46 -0.9 137,991 + LRK53_RS00610 0.59 -0.9 137,991 + LRK53_RS00610 0.59 -1.2 137,991 + LRK53_RS00610 0.59 +0.1 137,992 - LRK53_RS00610 0.59 -0.9 137,992 - LRK53_RS00610 0.59 -1.4 137,992 - LRK53_RS00610 0.59 -0.2 138,036 + LRK53_RS00610 0.65 -2.2 138,362 + +0.6 138,362 + -0.2 138,368 + +0.3 138,650 + LRK53_RS00615 0.35 -0.7 138,650 + LRK53_RS00615 0.35 -1.4 138,650 + LRK53_RS00615 0.35 -0.2 138,650 + LRK53_RS00615 0.35 -0.7 138,651 - LRK53_RS00615 0.35 +0.3 138,651 - LRK53_RS00615 0.35 -1.5 138,826 - LRK53_RS00615 0.52 -1.2 138,874 + LRK53_RS00615 0.56 -1.2 138,874 + LRK53_RS00615 0.56 +0.5 138,874 + LRK53_RS00615 0.56 -1.2 138,875 - LRK53_RS00615 0.57 -0.2 138,875 - LRK53_RS00615 0.57 +1.1 138,875 - LRK53_RS00615 0.57 -1.5 138,896 + LRK53_RS00615 0.58 -1.2 138,896 + LRK53_RS00615 0.58 -0.3 138,896 + LRK53_RS00615 0.58 -1.5 138,896 + LRK53_RS00615 0.58 -0.9 138,897 - LRK53_RS00615 0.59 -1.4 138,897 - LRK53_RS00615 0.59 -0.9 138,897 - LRK53_RS00615 0.59 -0.9 138,897 - LRK53_RS00615 0.59 -1.2 138,897 - LRK53_RS00615 0.59 -1.6 138,897 - LRK53_RS00615 0.59 -0.8 138,902 + LRK53_RS00615 0.59 +1.1 138,902 + LRK53_RS00615 0.59 +0.1 138,902 + LRK53_RS00615 0.59 +0.1 138,903 - LRK53_RS00615 0.59 -1.8 138,903 - LRK53_RS00615 0.59 -2.5 138,903 - LRK53_RS00615 0.59 -0.8 138,903 - LRK53_RS00615 0.59 -0.5 139,068 - LRK53_RS00615 0.75 +1.1 139,169 + LRK53_RS00615 0.84 +1.1 139,169 + LRK53_RS00615 0.84 -0.7 139,169 + LRK53_RS00615 0.84 -0.8 139,170 - LRK53_RS00615 0.85 +0.1 139,170 - LRK53_RS00615 0.85 -0.2 139,170 - LRK53_RS00615 0.85 -0.8
Or see this region's nucleotide sequence