Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00305 and LRK53_RS00310 are separated by 23 nucleotides LRK53_RS00310 and LRK53_RS00315 are separated by 173 nucleotides
LRK53_RS00305: LRK53_RS00305 - TorF family putative porin, at 70,344 to 71,105
_RS00305
LRK53_RS00310: LRK53_RS00310 - P-II family nitrogen regulator, at 71,129 to 71,467
_RS00310
LRK53_RS00315: LRK53_RS00315 - ammonium transporter, at 71,641 to 72,963
_RS00315
Position (kb) 71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.166 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.362 kb on + strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.363 kb on - strand at 70.470 kb on + strand, within LRK53_RS00305 at 70.470 kb on + strand, within LRK53_RS00305 at 70.471 kb on - strand, within LRK53_RS00305 at 70.551 kb on + strand, within LRK53_RS00305 at 70.551 kb on + strand, within LRK53_RS00305 at 70.552 kb on - strand, within LRK53_RS00305 at 70.552 kb on - strand, within LRK53_RS00305 at 70.552 kb on - strand, within LRK53_RS00305 at 70.696 kb on - strand, within LRK53_RS00305 at 70.696 kb on - strand, within LRK53_RS00305 at 70.702 kb on - strand, within LRK53_RS00305 at 70.707 kb on + strand, within LRK53_RS00305 at 70.758 kb on + strand, within LRK53_RS00305 at 70.758 kb on + strand, within LRK53_RS00305 at 70.758 kb on + strand, within LRK53_RS00305 at 70.759 kb on - strand, within LRK53_RS00305 at 70.759 kb on - strand, within LRK53_RS00305 at 70.759 kb on - strand, within LRK53_RS00305 at 70.759 kb on - strand, within LRK53_RS00305 at 70.794 kb on + strand, within LRK53_RS00305 at 70.794 kb on + strand, within LRK53_RS00305 at 70.794 kb on + strand, within LRK53_RS00305 at 70.794 kb on + strand, within LRK53_RS00305 at 70.794 kb on + strand, within LRK53_RS00305 at 70.795 kb on - strand, within LRK53_RS00305 at 70.795 kb on - strand, within LRK53_RS00305 at 70.795 kb on - strand, within LRK53_RS00305 at 70.800 kb on + strand, within LRK53_RS00305 at 70.800 kb on + strand, within LRK53_RS00305 at 70.800 kb on + strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.801 kb on - strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.921 kb on + strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 70.922 kb on - strand, within LRK53_RS00305 at 71.037 kb on + strand at 71.037 kb on + strand at 71.038 kb on - strand at 71.038 kb on - strand at 71.038 kb on - strand at 71.059 kb on - strand at 71.059 kb on - strand at 71.059 kb on - strand at 71.059 kb on - strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.112 kb on + strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.113 kb on - strand at 71.159 kb on + strand at 71.159 kb on + strand at 71.160 kb on - strand at 71.264 kb on + strand, within LRK53_RS00310 at 71.265 kb on - strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.279 kb on + strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.280 kb on - strand, within LRK53_RS00310 at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.527 kb on + strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.528 kb on - strand at 71.561 kb on + strand at 71.562 kb on - strand at 71.562 kb on - strand at 71.815 kb on + strand, within LRK53_RS00315 at 71.816 kb on - strand, within LRK53_RS00315 at 71.816 kb on - strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.828 kb on + strand, within LRK53_RS00315 at 71.829 kb on - strand, within LRK53_RS00315 at 71.829 kb on - strand, within LRK53_RS00315 at 71.829 kb on - strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.905 kb on + strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.906 kb on - strand, within LRK53_RS00315 at 71.912 kb on - strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.031 kb on + strand, within LRK53_RS00315 at 72.032 kb on - strand, within LRK53_RS00315 at 72.032 kb on - strand, within LRK53_RS00315 at 72.032 kb on - strand, within LRK53_RS00315 at 72.157 kb on + strand, within LRK53_RS00315 at 72.157 kb on + strand, within LRK53_RS00315 at 72.157 kb on + strand, within LRK53_RS00315 at 72.157 kb on + strand, within LRK53_RS00315 at 72.158 kb on - strand, within LRK53_RS00315
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 70,166 + -1.5 70,362 + -0.9 70,362 + -0.2 70,362 + +0.5 70,362 + -2.2 70,362 + -0.9 70,362 + +0.8 70,362 + +1.1 70,362 + +0.5 70,362 + +0.1 70,362 + -1.8 70,362 + +0.1 70,362 + -2.1 70,363 - -0.5 70,363 - +0.1 70,363 - -0.3 70,363 - -0.5 70,363 - -0.5 70,363 - -1.3 70,363 - +0.1 70,363 - +1.1 70,363 - -0.8 70,363 - +0.1 70,470 + LRK53_RS00305 0.17 -0.0 70,470 + LRK53_RS00305 0.17 +1.1 70,471 - LRK53_RS00305 0.17 -0.4 70,551 + LRK53_RS00305 0.27 -0.9 70,551 + LRK53_RS00305 0.27 -2.1 70,552 - LRK53_RS00305 0.27 -2.2 70,552 - LRK53_RS00305 0.27 -1.5 70,552 - LRK53_RS00305 0.27 -1.0 70,696 - LRK53_RS00305 0.46 +1.1 70,696 - LRK53_RS00305 0.46 -1.2 70,702 - LRK53_RS00305 0.47 +1.1 70,707 + LRK53_RS00305 0.48 -1.1 70,758 + LRK53_RS00305 0.54 -0.2 70,758 + LRK53_RS00305 0.54 -1.9 70,758 + LRK53_RS00305 0.54 +1.1 70,759 - LRK53_RS00305 0.54 -1.5 70,759 - LRK53_RS00305 0.54 +1.1 70,759 - LRK53_RS00305 0.54 -0.5 70,759 - LRK53_RS00305 0.54 -1.0 70,794 + LRK53_RS00305 0.59 -0.8 70,794 + LRK53_RS00305 0.59 +1.1 70,794 + LRK53_RS00305 0.59 +1.7 70,794 + LRK53_RS00305 0.59 -0.3 70,794 + LRK53_RS00305 0.59 -1.2 70,795 - LRK53_RS00305 0.59 +1.1 70,795 - LRK53_RS00305 0.59 -1.6 70,795 - LRK53_RS00305 0.59 +1.4 70,800 + LRK53_RS00305 0.60 -0.5 70,800 + LRK53_RS00305 0.60 -1.2 70,800 + LRK53_RS00305 0.60 -1.2 70,801 - LRK53_RS00305 0.60 +0.5 70,801 - LRK53_RS00305 0.60 -0.9 70,801 - LRK53_RS00305 0.60 -1.6 70,801 - LRK53_RS00305 0.60 +1.7 70,801 - LRK53_RS00305 0.60 -0.8 70,801 - LRK53_RS00305 0.60 -0.5 70,921 + LRK53_RS00305 0.76 +0.3 70,921 + LRK53_RS00305 0.76 +0.6 70,921 + LRK53_RS00305 0.76 -0.2 70,921 + LRK53_RS00305 0.76 -1.9 70,921 + LRK53_RS00305 0.76 -1.2 70,921 + LRK53_RS00305 0.76 -0.6 70,921 + LRK53_RS00305 0.76 +0.2 70,921 + LRK53_RS00305 0.76 +1.4 70,921 + LRK53_RS00305 0.76 +1.1 70,921 + LRK53_RS00305 0.76 +1.1 70,921 + LRK53_RS00305 0.76 +1.1 70,921 + LRK53_RS00305 0.76 -0.9 70,921 + LRK53_RS00305 0.76 +0.1 70,922 - LRK53_RS00305 0.76 -0.3 70,922 - LRK53_RS00305 0.76 +1.1 70,922 - LRK53_RS00305 0.76 -1.9 70,922 - LRK53_RS00305 0.76 +0.3 70,922 - LRK53_RS00305 0.76 -0.9 70,922 - LRK53_RS00305 0.76 -1.2 70,922 - LRK53_RS00305 0.76 +0.1 70,922 - LRK53_RS00305 0.76 +0.7 71,037 + -0.5 71,037 + -0.5 71,038 - +0.1 71,038 - -0.9 71,038 - +0.1 71,059 - -0.2 71,059 - +0.1 71,059 - +0.1 71,059 - -1.4 71,112 + -0.9 71,112 + -0.9 71,112 + -0.9 71,112 + +0.1 71,112 + -0.5 71,112 + +1.1 71,112 + -1.3 71,112 + -1.9 71,112 + -0.6 71,112 + +0.1 71,112 + +1.1 71,112 + -1.0 71,112 + +1.1 71,112 + -0.2 71,112 + -1.2 71,112 + +1.1 71,112 + -1.0 71,112 + +1.1 71,112 + +0.2 71,112 + -1.0 71,112 + -0.2 71,112 + +2.1 71,112 + +1.1 71,113 - -0.7 71,113 - +2.7 71,113 - +0.1 71,113 - +0.1 71,113 - -0.5 71,113 - -2.5 71,113 - -0.8 71,113 - -0.9 71,113 - -0.5 71,113 - -1.2 71,113 - -0.1 71,113 - +0.1 71,113 - -0.5 71,113 - -2.7 71,113 - +2.1 71,113 - -1.5 71,113 - -0.5 71,113 - +1.1 71,113 - -1.5 71,113 - -2.3 71,113 - +0.1 71,113 - -0.2 71,113 - +0.5 71,113 - +0.1 71,113 - -0.7 71,113 - +0.5 71,113 - -2.5 71,113 - +0.5 71,113 - -1.2 71,113 - +0.5 71,113 - +2.1 71,113 - -0.9 71,113 - -1.4 71,159 + -1.7 71,159 + -0.5 71,160 - +0.1 71,264 + LRK53_RS00310 0.40 -0.8 71,265 - LRK53_RS00310 0.40 +1.1 71,279 + LRK53_RS00310 0.44 -1.9 71,279 + LRK53_RS00310 0.44 -1.7 71,279 + LRK53_RS00310 0.44 -1.2 71,279 + LRK53_RS00310 0.44 -0.5 71,279 + LRK53_RS00310 0.44 +2.1 71,279 + LRK53_RS00310 0.44 -0.9 71,279 + LRK53_RS00310 0.44 -0.5 71,279 + LRK53_RS00310 0.44 -2.5 71,279 + LRK53_RS00310 0.44 -0.5 71,279 + LRK53_RS00310 0.44 -0.7 71,279 + LRK53_RS00310 0.44 +0.5 71,279 + LRK53_RS00310 0.44 -2.4 71,279 + LRK53_RS00310 0.44 +0.1 71,280 - LRK53_RS00310 0.45 -0.9 71,280 - LRK53_RS00310 0.45 -0.9 71,280 - LRK53_RS00310 0.45 -0.9 71,280 - LRK53_RS00310 0.45 +0.5 71,280 - LRK53_RS00310 0.45 +0.5 71,280 - LRK53_RS00310 0.45 +0.1 71,280 - LRK53_RS00310 0.45 -1.2 71,280 - LRK53_RS00310 0.45 -2.1 71,527 + +0.1 71,527 + -0.5 71,527 + -1.2 71,527 + -0.3 71,527 + -0.4 71,527 + -1.5 71,527 + -1.8 71,527 + +0.1 71,527 + -0.5 71,527 + +0.1 71,527 + -2.2 71,527 + -2.8 71,527 + -1.7 71,527 + +1.1 71,527 + -2.6 71,527 + -0.6 71,527 + -0.5 71,528 - +0.0 71,528 - -0.9 71,528 - -0.5 71,528 - -1.3 71,528 - +1.1 71,528 - -1.0 71,528 - -0.9 71,528 - -1.2 71,528 - +0.1 71,528 - -0.1 71,528 - -1.7 71,528 - -2.2 71,528 - -0.7 71,528 - -0.9 71,528 - +1.1 71,528 - +0.1 71,528 - +1.1 71,528 - +0.1 71,528 - -0.5 71,528 - +0.2 71,528 - +1.7 71,528 - -0.5 71,528 - -0.7 71,528 - -0.6 71,528 - -1.5 71,561 + -0.5 71,562 - +1.1 71,562 - +0.1 71,815 + LRK53_RS00315 0.13 +0.1 71,816 - LRK53_RS00315 0.13 -0.7 71,816 - LRK53_RS00315 0.13 +0.1 71,828 + LRK53_RS00315 0.14 -0.1 71,828 + LRK53_RS00315 0.14 -0.5 71,828 + LRK53_RS00315 0.14 +0.2 71,828 + LRK53_RS00315 0.14 -0.2 71,828 + LRK53_RS00315 0.14 +0.3 71,828 + LRK53_RS00315 0.14 -1.2 71,828 + LRK53_RS00315 0.14 -1.2 71,828 + LRK53_RS00315 0.14 +0.7 71,828 + LRK53_RS00315 0.14 +2.1 71,829 - LRK53_RS00315 0.14 -0.5 71,829 - LRK53_RS00315 0.14 +1.5 71,829 - LRK53_RS00315 0.14 +0.1 71,905 + LRK53_RS00315 0.20 -1.4 71,905 + LRK53_RS00315 0.20 -0.3 71,905 + LRK53_RS00315 0.20 -1.3 71,905 + LRK53_RS00315 0.20 -0.1 71,905 + LRK53_RS00315 0.20 -0.5 71,905 + LRK53_RS00315 0.20 -1.7 71,905 + LRK53_RS00315 0.20 -1.5 71,905 + LRK53_RS00315 0.20 -0.9 71,905 + LRK53_RS00315 0.20 -0.8 71,905 + LRK53_RS00315 0.20 -1.1 71,905 + LRK53_RS00315 0.20 +1.1 71,905 + LRK53_RS00315 0.20 -1.5 71,906 - LRK53_RS00315 0.20 +0.2 71,906 - LRK53_RS00315 0.20 -0.3 71,906 - LRK53_RS00315 0.20 -0.3 71,906 - LRK53_RS00315 0.20 +1.1 71,906 - LRK53_RS00315 0.20 +0.1 71,906 - LRK53_RS00315 0.20 +0.1 71,906 - LRK53_RS00315 0.20 +1.1 71,906 - LRK53_RS00315 0.20 -0.0 71,906 - LRK53_RS00315 0.20 +1.1 71,912 - LRK53_RS00315 0.20 +0.1 72,031 + LRK53_RS00315 0.29 -0.9 72,031 + LRK53_RS00315 0.29 +1.1 72,031 + LRK53_RS00315 0.29 -0.5 72,031 + LRK53_RS00315 0.29 -1.1 72,031 + LRK53_RS00315 0.29 -0.5 72,031 + LRK53_RS00315 0.29 -0.9 72,032 - LRK53_RS00315 0.30 -0.3 72,032 - LRK53_RS00315 0.30 -0.1 72,032 - LRK53_RS00315 0.30 +0.1 72,157 + LRK53_RS00315 0.39 -0.9 72,157 + LRK53_RS00315 0.39 +0.1 72,157 + LRK53_RS00315 0.39 +0.1 72,157 + LRK53_RS00315 0.39 +1.1 72,158 - LRK53_RS00315 0.39 -0.5
Or see this region's nucleotide sequence