Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00100 and LRK53_RS00105 are separated by 33 nucleotides LRK53_RS00105 and LRK53_RS00110 are separated by 145 nucleotides
LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491
_RS00100
LRK53_RS00105: LRK53_RS00105 - hypothetical protein, at 31,525 to 31,764
_RS00105
LRK53_RS00110: LRK53_RS00110 - PA0069 family radical SAM protein, at 31,910 to 33,016
_RS00110
Position (kb)
31
32 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.587 kb on - strand, within LRK53_RS00105 at 31.736 kb on - strand, within LRK53_RS00105 at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.819 kb on + strand at 31.820 kb on - strand at 31.820 kb on - strand at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.210 kb on + strand, within LRK53_RS00110 at 32.210 kb on + strand, within LRK53_RS00110 at 32.211 kb on - strand, within LRK53_RS00110 at 32.307 kb on - strand, within LRK53_RS00110 at 32.348 kb on + strand, within LRK53_RS00110 at 32.348 kb on + strand, within LRK53_RS00110 at 32.349 kb on - strand, within LRK53_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 31,501 + +1.5 31,501 + -0.7 31,501 + +0.1 31,501 + +1.1 31,501 + -0.5 31,501 + -0.5 31,501 + -0.0 31,501 + -0.5 31,501 + +0.1 31,501 + +2.1 31,501 + -0.5 31,501 + +0.1 31,501 + +0.1 31,501 + -1.5 31,501 + -0.4 31,501 + -0.9 31,501 + -0.3 31,501 + -1.6 31,501 + +0.1 31,587 - LRK53_RS00105 0.26 -0.9 31,736 - LRK53_RS00105 0.88 -0.9 31,769 + -0.4 31,769 + -0.5 31,769 + +0.1 31,769 + +0.1 31,769 + -2.2 31,769 + -0.5 31,770 - +2.1 31,770 - -1.7 31,770 - -0.4 31,770 - +1.1 31,770 - +2.1 31,770 - -0.7 31,770 - -1.1 31,819 + -1.2 31,820 - -0.5 31,820 - +0.1 32,183 + LRK53_RS00110 0.25 +0.1 32,183 + LRK53_RS00110 0.25 -1.7 32,183 + LRK53_RS00110 0.25 +0.5 32,183 + LRK53_RS00110 0.25 -0.2 32,183 + LRK53_RS00110 0.25 -0.5 32,183 + LRK53_RS00110 0.25 -0.5 32,184 - LRK53_RS00110 0.25 -0.9 32,184 - LRK53_RS00110 0.25 +0.1 32,184 - LRK53_RS00110 0.25 -2.4 32,184 - LRK53_RS00110 0.25 +0.5 32,184 - LRK53_RS00110 0.25 -2.1 32,184 - LRK53_RS00110 0.25 -0.8 32,210 + LRK53_RS00110 0.27 -1.1 32,210 + LRK53_RS00110 0.27 -0.5 32,211 - LRK53_RS00110 0.27 +0.1 32,307 - LRK53_RS00110 0.36 -0.2 32,348 + LRK53_RS00110 0.40 +2.7 32,348 + LRK53_RS00110 0.40 +0.1 32,349 - LRK53_RS00110 0.40 +1.1
Or see this region's nucleotide sequence