Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00105

Experiment: pH4.8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00100 and LRK53_RS00105 are separated by 33 nucleotidesLRK53_RS00105 and LRK53_RS00110 are separated by 145 nucleotides LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491 _RS00100 LRK53_RS00105: LRK53_RS00105 - hypothetical protein, at 31,525 to 31,764 _RS00105 LRK53_RS00110: LRK53_RS00110 - PA0069 family radical SAM protein, at 31,910 to 33,016 _RS00110 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.587 kb on - strand, within LRK53_RS00105at 31.736 kb on - strand, within LRK53_RS00105at 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.819 kb on + strandat 31.820 kb on - strandat 31.820 kb on - strandat 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.210 kb on + strand, within LRK53_RS00110at 32.210 kb on + strand, within LRK53_RS00110at 32.211 kb on - strand, within LRK53_RS00110at 32.307 kb on - strand, within LRK53_RS00110at 32.348 kb on + strand, within LRK53_RS00110at 32.348 kb on + strand, within LRK53_RS00110at 32.349 kb on - strand, within LRK53_RS00110

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.8
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31,501 + +1.5
31,501 + -0.7
31,501 + +0.1
31,501 + +1.1
31,501 + -0.5
31,501 + -0.5
31,501 + -0.0
31,501 + -0.5
31,501 + +0.1
31,501 + +2.1
31,501 + -0.5
31,501 + +0.1
31,501 + +0.1
31,501 + -1.5
31,501 + -0.4
31,501 + -0.9
31,501 + -0.3
31,501 + -1.6
31,501 + +0.1
31,587 - LRK53_RS00105 0.26 -0.9
31,736 - LRK53_RS00105 0.88 -0.9
31,769 + -0.4
31,769 + -0.5
31,769 + +0.1
31,769 + +0.1
31,769 + -2.2
31,769 + -0.5
31,770 - +2.1
31,770 - -1.7
31,770 - -0.4
31,770 - +1.1
31,770 - +2.1
31,770 - -0.7
31,770 - -1.1
31,819 + -1.2
31,820 - -0.5
31,820 - +0.1
32,183 + LRK53_RS00110 0.25 +0.1
32,183 + LRK53_RS00110 0.25 -1.7
32,183 + LRK53_RS00110 0.25 +0.5
32,183 + LRK53_RS00110 0.25 -0.2
32,183 + LRK53_RS00110 0.25 -0.5
32,183 + LRK53_RS00110 0.25 -0.5
32,184 - LRK53_RS00110 0.25 -0.9
32,184 - LRK53_RS00110 0.25 +0.1
32,184 - LRK53_RS00110 0.25 -2.4
32,184 - LRK53_RS00110 0.25 +0.5
32,184 - LRK53_RS00110 0.25 -2.1
32,184 - LRK53_RS00110 0.25 -0.8
32,210 + LRK53_RS00110 0.27 -1.1
32,210 + LRK53_RS00110 0.27 -0.5
32,211 - LRK53_RS00110 0.27 +0.1
32,307 - LRK53_RS00110 0.36 -0.2
32,348 + LRK53_RS00110 0.40 +2.7
32,348 + LRK53_RS00110 0.40 +0.1
32,349 - LRK53_RS00110 0.40 +1.1

Or see this region's nucleotide sequence