Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17145 and LRK53_RS17150 are separated by 148 nucleotides LRK53_RS17150 and LRK53_RS17155 are separated by 143 nucleotides LRK53_RS17155 and LRK53_RS17160 are separated by 101 nucleotides
LRK53_RS17145: LRK53_RS17145 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,771,689 to 3,772,690
_RS17145
LRK53_RS17150: LRK53_RS17150 - ferredoxin family protein, at 3,772,839 to 3,773,165
_RS17150
LRK53_RS17155: LRK53_RS17155 - azurin, at 3,773,309 to 3,773,755
_RS17155
LRK53_RS17160: LRK53_RS17160 - group III truncated hemoglobin, at 3,773,857 to 3,774,267
_RS17160
Position (kb)
3772
3773
3774 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3772.109 kb on + strand, within LRK53_RS17145 at 3772.109 kb on + strand, within LRK53_RS17145 at 3772.110 kb on - strand, within LRK53_RS17145 at 3772.451 kb on + strand, within LRK53_RS17145 at 3772.451 kb on + strand, within LRK53_RS17145 at 3772.514 kb on + strand, within LRK53_RS17145 at 3772.514 kb on + strand, within LRK53_RS17145 at 3772.514 kb on + strand, within LRK53_RS17145 at 3772.688 kb on + strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.689 kb on - strand at 3772.759 kb on - strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3772.840 kb on + strand at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.045 kb on + strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.046 kb on - strand, within LRK53_RS17150 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.579 kb on + strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.580 kb on - strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.614 kb on + strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.615 kb on - strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.687 kb on + strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.688 kb on - strand, within LRK53_RS17155 at 3773.753 kb on + strand at 3773.753 kb on + strand at 3773.753 kb on + strand at 3773.753 kb on + strand at 3773.753 kb on + strand at 3773.914 kb on + strand, within LRK53_RS17160 at 3773.914 kb on + strand, within LRK53_RS17160 at 3773.915 kb on - strand, within LRK53_RS17160 at 3774.037 kb on + strand, within LRK53_RS17160 at 3774.038 kb on - strand, within LRK53_RS17160 at 3774.038 kb on - strand, within LRK53_RS17160
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 3,772,109 + LRK53_RS17145 0.42 -1.2 3,772,109 + LRK53_RS17145 0.42 +1.3 3,772,110 - LRK53_RS17145 0.42 +0.3 3,772,451 + LRK53_RS17145 0.76 +1.3 3,772,451 + LRK53_RS17145 0.76 +1.3 3,772,514 + LRK53_RS17145 0.82 +1.3 3,772,514 + LRK53_RS17145 0.82 +2.9 3,772,514 + LRK53_RS17145 0.82 -0.7 3,772,688 + -0.2 3,772,689 - -0.7 3,772,689 - +1.4 3,772,689 - -0.1 3,772,689 - -1.1 3,772,689 - -1.5 3,772,689 - +0.4 3,772,689 - -0.1 3,772,689 - +0.1 3,772,689 - -1.0 3,772,689 - +0.1 3,772,689 - +0.8 3,772,689 - +0.0 3,772,689 - -0.6 3,772,689 - -1.8 3,772,689 - +0.9 3,772,759 - +0.1 3,772,840 + +0.4 3,772,840 + +1.4 3,772,840 + +0.2 3,772,840 + -1.0 3,772,840 + +0.4 3,772,840 + -1.1 3,772,840 + -0.6 3,772,840 + +0.4 3,772,840 + -1.3 3,772,840 + -0.2 3,772,840 + +1.4 3,772,840 + -0.6 3,772,840 + -0.6 3,772,840 + -1.6 3,772,840 + +0.1 3,772,840 + -0.7 3,772,840 + -1.2 3,773,045 + LRK53_RS17150 0.63 +1.4 3,773,045 + LRK53_RS17150 0.63 -0.2 3,773,045 + LRK53_RS17150 0.63 +0.0 3,773,045 + LRK53_RS17150 0.63 -0.8 3,773,045 + LRK53_RS17150 0.63 -0.6 3,773,045 + LRK53_RS17150 0.63 -0.2 3,773,045 + LRK53_RS17150 0.63 -1.0 3,773,046 - LRK53_RS17150 0.63 -1.0 3,773,046 - LRK53_RS17150 0.63 -1.6 3,773,046 - LRK53_RS17150 0.63 -0.2 3,773,046 - LRK53_RS17150 0.63 +0.4 3,773,046 - LRK53_RS17150 0.63 +0.0 3,773,046 - LRK53_RS17150 0.63 -1.1 3,773,046 - LRK53_RS17150 0.63 -0.6 3,773,579 + LRK53_RS17155 0.60 +0.6 3,773,579 + LRK53_RS17155 0.60 -1.2 3,773,579 + LRK53_RS17155 0.60 +1.6 3,773,579 + LRK53_RS17155 0.60 +0.4 3,773,579 + LRK53_RS17155 0.60 -0.6 3,773,579 + LRK53_RS17155 0.60 -0.9 3,773,579 + LRK53_RS17155 0.60 -0.6 3,773,579 + LRK53_RS17155 0.60 -1.5 3,773,579 + LRK53_RS17155 0.60 -1.3 3,773,579 + LRK53_RS17155 0.60 +0.4 3,773,579 + LRK53_RS17155 0.60 -0.7 3,773,580 - LRK53_RS17155 0.61 +0.4 3,773,580 - LRK53_RS17155 0.61 +0.7 3,773,580 - LRK53_RS17155 0.61 -1.5 3,773,580 - LRK53_RS17155 0.61 -1.0 3,773,580 - LRK53_RS17155 0.61 -0.2 3,773,580 - LRK53_RS17155 0.61 +0.7 3,773,580 - LRK53_RS17155 0.61 -1.1 3,773,580 - LRK53_RS17155 0.61 +0.4 3,773,614 + LRK53_RS17155 0.68 +0.3 3,773,614 + LRK53_RS17155 0.68 +0.4 3,773,614 + LRK53_RS17155 0.68 +0.4 3,773,614 + LRK53_RS17155 0.68 -0.5 3,773,614 + LRK53_RS17155 0.68 -0.9 3,773,614 + LRK53_RS17155 0.68 -0.6 3,773,614 + LRK53_RS17155 0.68 -0.1 3,773,614 + LRK53_RS17155 0.68 -0.3 3,773,614 + LRK53_RS17155 0.68 +1.4 3,773,614 + LRK53_RS17155 0.68 +0.2 3,773,614 + LRK53_RS17155 0.68 -0.5 3,773,614 + LRK53_RS17155 0.68 +1.4 3,773,614 + LRK53_RS17155 0.68 -0.2 3,773,615 - LRK53_RS17155 0.68 -1.3 3,773,615 - LRK53_RS17155 0.68 +0.1 3,773,615 - LRK53_RS17155 0.68 +1.4 3,773,615 - LRK53_RS17155 0.68 +0.4 3,773,615 - LRK53_RS17155 0.68 -0.2 3,773,615 - LRK53_RS17155 0.68 -0.1 3,773,615 - LRK53_RS17155 0.68 +0.4 3,773,687 + LRK53_RS17155 0.85 -1.6 3,773,687 + LRK53_RS17155 0.85 -0.5 3,773,687 + LRK53_RS17155 0.85 -0.6 3,773,687 + LRK53_RS17155 0.85 -0.8 3,773,687 + LRK53_RS17155 0.85 +1.4 3,773,687 + LRK53_RS17155 0.85 +0.2 3,773,687 + LRK53_RS17155 0.85 +0.4 3,773,687 + LRK53_RS17155 0.85 -0.1 3,773,687 + LRK53_RS17155 0.85 -1.2 3,773,687 + LRK53_RS17155 0.85 +0.0 3,773,687 + LRK53_RS17155 0.85 +1.4 3,773,687 + LRK53_RS17155 0.85 +0.4 3,773,688 - LRK53_RS17155 0.85 +0.8 3,773,688 - LRK53_RS17155 0.85 -2.6 3,773,688 - LRK53_RS17155 0.85 -0.1 3,773,688 - LRK53_RS17155 0.85 -0.6 3,773,688 - LRK53_RS17155 0.85 +0.4 3,773,688 - LRK53_RS17155 0.85 +0.2 3,773,688 - LRK53_RS17155 0.85 +1.4 3,773,688 - LRK53_RS17155 0.85 -0.3 3,773,688 - LRK53_RS17155 0.85 +0.5 3,773,688 - LRK53_RS17155 0.85 +0.8 3,773,688 - LRK53_RS17155 0.85 +1.4 3,773,688 - LRK53_RS17155 0.85 -0.5 3,773,688 - LRK53_RS17155 0.85 +0.2 3,773,753 + -0.1 3,773,753 + -0.6 3,773,753 + -1.5 3,773,753 + +0.9 3,773,753 + -1.0 3,773,914 + LRK53_RS17160 0.14 +0.4 3,773,914 + LRK53_RS17160 0.14 +0.1 3,773,915 - LRK53_RS17160 0.14 -2.6 3,774,037 + LRK53_RS17160 0.44 -1.0 3,774,038 - LRK53_RS17160 0.44 -1.7 3,774,038 - LRK53_RS17160 0.44 +1.4
Or see this region's nucleotide sequence