Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15435

Experiment: pH4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH4.5
3,372,766	-		LRK53_RS15430	0.46	-0.6
3,372,775	+		LRK53_RS15430	0.46	+1.0
3,372,775	+		LRK53_RS15430	0.46	+0.6
3,372,775	+		LRK53_RS15430	0.46	+1.0
3,372,775	+		LRK53_RS15430	0.46	-0.6
3,372,775	+		LRK53_RS15430	0.46	-0.4
3,372,776	-		LRK53_RS15430	0.46	-0.7
3,372,776	-		LRK53_RS15430	0.46	-1.0
3,372,776	-		LRK53_RS15430	0.46	+1.0
3,372,776	-		LRK53_RS15430	0.46	-1.4
3,372,776	-		LRK53_RS15430	0.46	-1.8
3,372,776	-		LRK53_RS15430	0.46	+0.7
3,372,776	-		LRK53_RS15430	0.46	-2.4
3,372,776	-		LRK53_RS15430	0.46	+1.0
3,372,776	-		LRK53_RS15430	0.46	+1.6
3,372,777	+		LRK53_RS15430	0.46	+0.0
3,372,777	+		LRK53_RS15430	0.46	+1.0
3,372,777	+		LRK53_RS15430	0.46	-0.1
3,372,777	+		LRK53_RS15430	0.46	-2.0
3,372,777	+		LRK53_RS15430	0.46	+0.0
3,372,778	-		LRK53_RS15430	0.46	-1.6
3,372,778	-		LRK53_RS15430	0.46	-0.6
3,372,778	-		LRK53_RS15430	0.46	+0.0
3,372,810	+		LRK53_RS15430	0.48	-2.1
3,372,810	+		LRK53_RS15430	0.48	+1.0
3,372,810	+		LRK53_RS15430	0.48	-1.5
3,372,811	-		LRK53_RS15430	0.48	-0.8
3,372,811	-		LRK53_RS15430	0.48	+0.0
3,372,811	-		LRK53_RS15430	0.48	-1.3
3,372,811	-		LRK53_RS15430	0.48	-0.6
3,372,811	-		LRK53_RS15430	0.48	-0.6
3,372,928	+		LRK53_RS15430	0.56	+1.0
3,372,928	+		LRK53_RS15430	0.56	-0.3
3,372,929	-		LRK53_RS15430	0.56	-2.0
3,372,929	-		LRK53_RS15430	0.56	-0.7
3,372,929	-		LRK53_RS15430	0.56	+1.0
3,372,933	+		LRK53_RS15430	0.56	-1.0
3,372,933	+		LRK53_RS15430	0.56	-2.9
3,372,933	+		LRK53_RS15430	0.56	+2.0
3,372,934	-		LRK53_RS15430	0.56	-1.8
3,372,934	-		LRK53_RS15430	0.56	-0.6
3,372,934	-		LRK53_RS15430	0.56	+0.0
3,372,934	-		LRK53_RS15430	0.56	+0.6
3,372,934	-		LRK53_RS15430	0.56	-1.7
3,372,934	-		LRK53_RS15430	0.56	-1.0
3,372,987	+		LRK53_RS15430	0.59	+2.6
3,372,987	+		LRK53_RS15430	0.59	+0.0
3,372,987	+		LRK53_RS15430	0.59	-0.6
3,373,010	+		LRK53_RS15430	0.61	+0.6
3,373,010	+		LRK53_RS15430	0.61	-1.0
3,373,010	+		LRK53_RS15430	0.61	-0.8
3,373,010	+		LRK53_RS15430	0.61	-1.1
3,373,010	+		LRK53_RS15430	0.61	-2.2
3,373,011	-		LRK53_RS15430	0.61	-0.6
3,373,011	-		LRK53_RS15430	0.61	-0.9
3,373,011	-		LRK53_RS15430	0.61	-1.3
3,373,011	-		LRK53_RS15430	0.61	+1.0
3,373,011	-		LRK53_RS15430	0.61	-0.6
3,373,011	-		LRK53_RS15430	0.61	+0.4
3,373,011	-		LRK53_RS15430	0.61	-2.2
3,373,011	-		LRK53_RS15430	0.61	-1.8
3,373,011	-		LRK53_RS15430	0.61	+0.0
3,373,014	+		LRK53_RS15430	0.61	-0.6
3,373,014	+		LRK53_RS15430	0.61	-1.5
3,373,014	+		LRK53_RS15430	0.61	+0.3
3,373,014	+		LRK53_RS15430	0.61	-2.5
3,373,014	+		LRK53_RS15430	0.61	-1.3
3,373,014	+		LRK53_RS15430	0.61	+1.0
3,373,014	+		LRK53_RS15430	0.61	-1.0
3,373,014	+		LRK53_RS15430	0.61	-0.9
3,373,015	-		LRK53_RS15430	0.61	-0.6
3,373,015	-		LRK53_RS15430	0.61	-1.0
3,373,015	-		LRK53_RS15430	0.61	+0.6
3,373,015	-		LRK53_RS15430	0.61	-1.0
3,373,077	+		LRK53_RS15430	0.65	+0.4
3,373,077	+		LRK53_RS15430	0.65	-1.1
3,373,077	+		LRK53_RS15430	0.65	+0.0
3,373,078	-		LRK53_RS15430	0.65	-1.3
3,373,078	-		LRK53_RS15430	0.65	-1.5
3,373,129	+		LRK53_RS15430	0.68	-0.6
3,373,129	+		LRK53_RS15430	0.68	-0.7
3,373,129	+		LRK53_RS15430	0.68	-0.8
3,373,129	+		LRK53_RS15430	0.68	-0.6
3,373,129	+		LRK53_RS15430	0.68	+0.0
3,373,129	+		LRK53_RS15430	0.68	+0.4
3,373,130	-		LRK53_RS15430	0.68	+0.0
3,373,130	-		LRK53_RS15430	0.68	+1.0
3,373,130	-		LRK53_RS15430	0.68	-0.4
3,373,130	-		LRK53_RS15430	0.68	-1.6
3,373,130	-		LRK53_RS15430	0.68	+0.3
3,373,130	-		LRK53_RS15430	0.68	-3.9
3,373,130	-		LRK53_RS15430	0.68	-1.3
3,373,212	+		LRK53_RS15430	0.74	+2.6
3,373,212	+		LRK53_RS15430	0.74	-0.4
3,373,212	+		LRK53_RS15430	0.74	-0.9
3,373,212	+		LRK53_RS15430	0.74	-1.0
3,373,212	+		LRK53_RS15430	0.74	+0.4
3,373,212	+		LRK53_RS15430	0.74	+1.0
3,373,212	+		LRK53_RS15430	0.74	+0.3
3,373,212	+		LRK53_RS15430	0.74	-1.5
3,373,212	+		LRK53_RS15430	0.74	-0.6
3,373,212	+		LRK53_RS15430	0.74	+0.2
3,373,213	-		LRK53_RS15430	0.74	+0.0
3,373,213	-		LRK53_RS15430	0.74	+0.0
3,373,213	-		LRK53_RS15430	0.74	-0.1
3,373,213	-		LRK53_RS15430	0.74	+2.0
3,373,224	+		LRK53_RS15430	0.74	+0.0
3,373,224	+		LRK53_RS15430	0.74	-1.0
3,373,224	+		LRK53_RS15430	0.74	+1.4
3,373,224	+		LRK53_RS15430	0.74	+0.0
3,373,224	+		LRK53_RS15430	0.74	-1.5
3,373,225	-		LRK53_RS15430	0.74	-1.5
3,373,225	-		LRK53_RS15430	0.74	+2.0
3,373,225	-		LRK53_RS15430	0.74	-0.7
3,373,225	-		LRK53_RS15430	0.74	+0.0
3,373,225	-		LRK53_RS15430	0.74	-0.1
3,373,225	-		LRK53_RS15430	0.74	+0.0
3,373,458	+		LRK53_RS15430	0.89	-0.9
3,373,458	+		LRK53_RS15430	0.89	-1.4
3,373,458	+		LRK53_RS15430	0.89	-1.0
3,373,458	+		LRK53_RS15430	0.89	+2.6
3,373,458	+		LRK53_RS15430	0.89	-1.0
3,373,458	+		LRK53_RS15430	0.89	-1.7
3,373,458	+		LRK53_RS15430	0.89	-0.3
3,373,458	+		LRK53_RS15430	0.89	-1.2
3,373,458	+		LRK53_RS15430	0.89	-0.6
3,373,458	+		LRK53_RS15430	0.89	-1.4
3,373,458	+		LRK53_RS15430	0.89	+1.0
3,373,458	+		LRK53_RS15430	0.89	-0.6
3,373,458	+		LRK53_RS15430	0.89	-0.3
3,373,459	-		LRK53_RS15430	0.89	+1.0
3,373,459	-		LRK53_RS15430	0.89	+1.6
3,373,459	-		LRK53_RS15430	0.89	+0.6
3,373,459	-		LRK53_RS15430	0.89	-0.5
3,373,459	-		LRK53_RS15430	0.89	-2.0
3,373,459	-		LRK53_RS15430	0.89	-0.8
3,373,459	-		LRK53_RS15430	0.89	-0.6
3,373,479	+				-0.3
3,373,479	+				-1.0
3,373,479	+				-1.5
3,373,479	+				-2.0
3,373,479	+				-1.0
3,373,480	-				-0.0
3,373,480	-				-1.3
3,373,739	+				-0.8
3,373,739	+				-1.0
3,373,739	+				-0.8
3,373,739	+				-0.3
3,373,739	+				-1.2
3,373,740	-				-0.0
3,373,740	-				+1.0
3,373,740	-				-1.0
3,373,740	-				-0.0
3,373,898	+		LRK53_RS15435	0.34	+1.0
3,373,950	+		LRK53_RS15435	0.43	-1.5
3,373,950	+		LRK53_RS15435	0.43	-1.0
3,373,950	+		LRK53_RS15435	0.43	-1.2
3,373,951	-		LRK53_RS15435	0.43	+0.3
3,373,951	-		LRK53_RS15435	0.43	+1.0
3,373,951	-		LRK53_RS15435	0.43	-2.5
3,373,951	-		LRK53_RS15435	0.43	-0.7
3,373,951	-		LRK53_RS15435	0.43	-1.8
3,373,951	-		LRK53_RS15435	0.43	-2.3
3,373,952	+		LRK53_RS15435	0.43	+1.0
3,373,952	+		LRK53_RS15435	0.43	+0.5
3,373,952	+		LRK53_RS15435	0.43	-1.8
3,373,953	-		LRK53_RS15435	0.43	-0.6
3,373,953	-		LRK53_RS15435	0.43	-0.2
3,373,953	-		LRK53_RS15435	0.43	-1.7
3,373,953	-		LRK53_RS15435	0.43	-1.2
3,373,953	-		LRK53_RS15435	0.43	-0.7
3,373,953	-		LRK53_RS15435	0.43	-0.8
3,373,978	+		LRK53_RS15435	0.47	-1.0
3,373,978	+		LRK53_RS15435	0.47	-1.0
3,373,978	+		LRK53_RS15435	0.47	+2.0
3,373,979	-		LRK53_RS15435	0.47	-1.6
3,374,003	+		LRK53_RS15435	0.51	-1.0
3,374,161	-		LRK53_RS15435	0.76	-0.9
3,374,161	-		LRK53_RS15435	0.76	+0.6
3,374,180	+		LRK53_RS15435	0.79	+0.4
3,374,180	+		LRK53_RS15435	0.79	-0.6
3,374,180	+		LRK53_RS15435	0.79	+1.0
3,374,180	+		LRK53_RS15435	0.79	-0.1
3,374,180	+		LRK53_RS15435	0.79	+2.0
3,374,180	+		LRK53_RS15435	0.79	-1.0
3,374,180	+		LRK53_RS15435	0.79	-0.3
3,374,181	-		LRK53_RS15435	0.80	-1.0
3,374,181	-		LRK53_RS15435	0.80	+1.4
3,374,181	-		LRK53_RS15435	0.80	-2.0
3,374,181	-		LRK53_RS15435	0.80	-1.8
3,374,181	-		LRK53_RS15435	0.80	-0.6
3,374,181	-		LRK53_RS15435	0.80	-0.6
3,374,181	-		LRK53_RS15435	0.80	-0.6
3,374,181	-		LRK53_RS15435	0.80	-1.0
3,374,181	-		LRK53_RS15435	0.80	+2.0
3,374,181	-		LRK53_RS15435	0.80	-0.4
3,374,181	-		LRK53_RS15435	0.80	-1.2
3,374,181	-		LRK53_RS15435	0.80	-0.0
3,374,181	-		LRK53_RS15435	0.80	-1.4
3,374,181	-		LRK53_RS15435	0.80	-0.8
3,374,421	+				-1.3
3,374,422	-				-0.0
3,374,422	-				-0.3
3,374,472	+				-1.6
3,374,473	-				-0.6
3,374,533	-		LRK53_RS15440	0.14	-0.5
3,374,533	-		LRK53_RS15440	0.14	-1.6
3,374,533	-		LRK53_RS15440	0.14	+1.0
3,374,533	-		LRK53_RS15440	0.14	+0.4
3,374,535	+		LRK53_RS15440	0.14	+1.0
3,374,536	-		LRK53_RS15440	0.14	-0.2
3,374,536	-		LRK53_RS15440	0.14	+1.0
3,374,536	-		LRK53_RS15440	0.14	-1.0
3,374,799	+		LRK53_RS15440	0.33	-2.0
3,374,799	+		LRK53_RS15440	0.33	-1.2
3,374,799	+		LRK53_RS15440	0.33	+1.0
3,374,799	+		LRK53_RS15440	0.33	-0.6
3,374,800	-		LRK53_RS15440	0.33	+1.6
3,374,800	-		LRK53_RS15440	0.33	+0.6
3,374,800	-		LRK53_RS15440	0.33	-1.8
3,374,800	-		LRK53_RS15440	0.33	-1.3
3,374,800	-		LRK53_RS15440	0.33	+1.0
3,374,800	-		LRK53_RS15440	0.33	-2.2
3,374,800	-		LRK53_RS15440	0.33	-0.0
3,374,957	+		LRK53_RS15440	0.44	-0.0
3,374,957	+		LRK53_RS15440	0.44	-1.3
3,374,957	+		LRK53_RS15440	0.44	-0.0
3,374,958	-		LRK53_RS15440	0.44	+1.0
3,374,958	-		LRK53_RS15440	0.44	+1.0
3,374,958	-		LRK53_RS15440	0.44	-1.0
3,375,144	+		LRK53_RS15440	0.58	-0.4
3,375,144	+		LRK53_RS15440	0.58	-0.9
3,375,144	+		LRK53_RS15440	0.58	-1.5
3,375,144	+		LRK53_RS15440	0.58	-1.0
3,375,144	+		LRK53_RS15440	0.58	+1.0
3,375,144	+		LRK53_RS15440	0.58	+2.6
3,375,144	+		LRK53_RS15440	0.58	-2.0
3,375,144	+		LRK53_RS15440	0.58	-1.3
3,375,144	+		LRK53_RS15440	0.58	+1.0
3,375,144	+		LRK53_RS15440	0.58	-0.3
3,375,144	+		LRK53_RS15440	0.58	+1.0
3,375,144	+		LRK53_RS15440	0.58	-0.2
3,375,144	+		LRK53_RS15440	0.58	-2.3
3,375,145	-		LRK53_RS15440	0.58	+0.6
3,375,145	-		LRK53_RS15440	0.58	-1.3
3,375,145	-		LRK53_RS15440	0.58	+1.0
3,375,145	-		LRK53_RS15440	0.58	+0.3
3,375,145	-		LRK53_RS15440	0.58	-0.4
3,375,145	-		LRK53_RS15440	0.58	-2.3
3,375,145	-		LRK53_RS15440	0.58	+0.2
3,375,145	-		LRK53_RS15440	0.58	-0.8
3,375,145	-		LRK53_RS15440	0.58	-0.3
3,375,145	-		LRK53_RS15440	0.58	+1.0
3,375,145	-		LRK53_RS15440	0.58	-0.6
3,375,213	+		LRK53_RS15440	0.63	-0.4
3,375,213	+		LRK53_RS15440	0.63	-1.0
3,375,214	-		LRK53_RS15440	0.63	-0.0
3,375,214	-		LRK53_RS15440	0.63	+1.0
3,375,214	-		LRK53_RS15440	0.63	-0.8
3,375,214	-		LRK53_RS15440	0.63	-1.3
3,375,214	-		LRK53_RS15440	0.63	-1.7
3,375,214	-		LRK53_RS15440	0.63	-2.2