Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11030 and LRK53_RS11035 are separated by 134 nucleotides LRK53_RS11035 and LRK53_RS11040 are separated by 375 nucleotides LRK53_RS11040 and LRK53_RS11045 are separated by 22 nucleotides
LRK53_RS11030: LRK53_RS11030 - hypothetical protein, at 2,464,572 to 2,466,014
_RS11030
LRK53_RS11035: LRK53_RS11035 - major capsid protein, at 2,466,149 to 2,466,361
_RS11035
LRK53_RS11040: LRK53_RS11040 - hypothetical protein, at 2,466,737 to 2,467,015
_RS11040
LRK53_RS11045: LRK53_RS11045 - replication initiation factor domain-containing protein, at 2,467,038 to 2,468,075
_RS11045
Position (kb)
2466
2467 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2465.241 kb on - strand, within LRK53_RS11030 at 2465.284 kb on + strand, within LRK53_RS11030 at 2465.284 kb on + strand, within LRK53_RS11030 at 2465.285 kb on - strand, within LRK53_RS11030 at 2465.285 kb on - strand, within LRK53_RS11030 at 2465.285 kb on - strand, within LRK53_RS11030 at 2465.312 kb on - strand, within LRK53_RS11030 at 2465.312 kb on - strand, within LRK53_RS11030 at 2465.312 kb on - strand, within LRK53_RS11030 at 2465.312 kb on - strand, within LRK53_RS11030 at 2465.332 kb on + strand, within LRK53_RS11030 at 2465.332 kb on + strand, within LRK53_RS11030 at 2465.333 kb on - strand, within LRK53_RS11030 at 2465.459 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.482 kb on + strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.483 kb on - strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.495 kb on + strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.496 kb on - strand, within LRK53_RS11030 at 2465.623 kb on + strand, within LRK53_RS11030 at 2465.623 kb on + strand, within LRK53_RS11030 at 2465.623 kb on + strand, within LRK53_RS11030 at 2465.623 kb on + strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.624 kb on - strand, within LRK53_RS11030 at 2465.729 kb on + strand, within LRK53_RS11030 at 2465.730 kb on - strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.737 kb on + strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.738 kb on - strand, within LRK53_RS11030 at 2465.789 kb on - strand, within LRK53_RS11030 at 2465.789 kb on - strand, within LRK53_RS11030 at 2465.789 kb on - strand, within LRK53_RS11030 at 2465.789 kb on - strand, within LRK53_RS11030 at 2465.789 kb on - strand, within LRK53_RS11030 at 2466.068 kb on + strand at 2466.068 kb on + strand at 2466.068 kb on + strand at 2466.068 kb on + strand at 2466.069 kb on - strand at 2466.076 kb on + strand at 2466.076 kb on + strand at 2466.174 kb on + strand, within LRK53_RS11035 at 2466.175 kb on - strand, within LRK53_RS11035 at 2466.189 kb on + strand, within LRK53_RS11035 at 2466.268 kb on + strand, within LRK53_RS11035 at 2466.283 kb on + strand, within LRK53_RS11035 at 2466.283 kb on + strand, within LRK53_RS11035 at 2466.284 kb on - strand, within LRK53_RS11035 at 2466.400 kb on + strand at 2466.400 kb on + strand at 2466.400 kb on + strand at 2466.400 kb on + strand at 2466.400 kb on + strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.401 kb on - strand at 2466.459 kb on + strand at 2466.459 kb on + strand at 2466.460 kb on - strand at 2466.460 kb on - strand at 2466.716 kb on - strand at 2466.716 kb on - strand at 2466.738 kb on + strand at 2466.738 kb on + strand at 2466.807 kb on + strand, within LRK53_RS11040 at 2466.807 kb on + strand, within LRK53_RS11040 at 2466.808 kb on - strand, within LRK53_RS11040 at 2466.831 kb on + strand, within LRK53_RS11040 at 2466.852 kb on + strand, within LRK53_RS11040 at 2466.852 kb on + strand, within LRK53_RS11040 at 2466.984 kb on + strand, within LRK53_RS11040 at 2467.048 kb on - strand at 2467.048 kb on - strand at 2467.048 kb on - strand at 2467.118 kb on + strand at 2467.118 kb on + strand at 2467.118 kb on + strand at 2467.119 kb on - strand at 2467.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 2,465,241 - LRK53_RS11030 0.46 -1.1 2,465,284 + LRK53_RS11030 0.49 -0.8 2,465,284 + LRK53_RS11030 0.49 -0.0 2,465,285 - LRK53_RS11030 0.49 -1.0 2,465,285 - LRK53_RS11030 0.49 -1.3 2,465,285 - LRK53_RS11030 0.49 -0.0 2,465,312 - LRK53_RS11030 0.51 -0.0 2,465,312 - LRK53_RS11030 0.51 -0.2 2,465,312 - LRK53_RS11030 0.51 +0.2 2,465,312 - LRK53_RS11030 0.51 -0.0 2,465,332 + LRK53_RS11030 0.53 -0.0 2,465,332 + LRK53_RS11030 0.53 -2.6 2,465,333 - LRK53_RS11030 0.53 +0.6 2,465,459 + LRK53_RS11030 0.61 +0.4 2,465,482 + LRK53_RS11030 0.63 +1.0 2,465,482 + LRK53_RS11030 0.63 +0.6 2,465,482 + LRK53_RS11030 0.63 -0.0 2,465,482 + LRK53_RS11030 0.63 -0.9 2,465,482 + LRK53_RS11030 0.63 -0.6 2,465,482 + LRK53_RS11030 0.63 -0.6 2,465,482 + LRK53_RS11030 0.63 +1.0 2,465,482 + LRK53_RS11030 0.63 -0.0 2,465,482 + LRK53_RS11030 0.63 -2.3 2,465,483 - LRK53_RS11030 0.63 +1.0 2,465,483 - LRK53_RS11030 0.63 -0.1 2,465,483 - LRK53_RS11030 0.63 +1.0 2,465,483 - LRK53_RS11030 0.63 -0.1 2,465,483 - LRK53_RS11030 0.63 +1.0 2,465,483 - LRK53_RS11030 0.63 -1.2 2,465,483 - LRK53_RS11030 0.63 -0.8 2,465,483 - LRK53_RS11030 0.63 -0.8 2,465,495 + LRK53_RS11030 0.64 +1.0 2,465,495 + LRK53_RS11030 0.64 +0.2 2,465,495 + LRK53_RS11030 0.64 -0.2 2,465,495 + LRK53_RS11030 0.64 -1.6 2,465,495 + LRK53_RS11030 0.64 -1.5 2,465,495 + LRK53_RS11030 0.64 +1.0 2,465,495 + LRK53_RS11030 0.64 +0.3 2,465,495 + LRK53_RS11030 0.64 -0.7 2,465,496 - LRK53_RS11030 0.64 -1.6 2,465,496 - LRK53_RS11030 0.64 -0.6 2,465,496 - LRK53_RS11030 0.64 -0.6 2,465,496 - LRK53_RS11030 0.64 -0.0 2,465,496 - LRK53_RS11030 0.64 -0.7 2,465,496 - LRK53_RS11030 0.64 +0.7 2,465,496 - LRK53_RS11030 0.64 +1.0 2,465,496 - LRK53_RS11030 0.64 -1.2 2,465,496 - LRK53_RS11030 0.64 -0.6 2,465,623 + LRK53_RS11030 0.73 +0.4 2,465,623 + LRK53_RS11030 0.73 +2.0 2,465,623 + LRK53_RS11030 0.73 +0.6 2,465,623 + LRK53_RS11030 0.73 +1.0 2,465,624 - LRK53_RS11030 0.73 -1.0 2,465,624 - LRK53_RS11030 0.73 -1.2 2,465,624 - LRK53_RS11030 0.73 -0.1 2,465,624 - LRK53_RS11030 0.73 -2.0 2,465,624 - LRK53_RS11030 0.73 -0.6 2,465,624 - LRK53_RS11030 0.73 -1.5 2,465,729 + LRK53_RS11030 0.80 -0.3 2,465,730 - LRK53_RS11030 0.80 -0.6 2,465,737 + LRK53_RS11030 0.81 -0.0 2,465,737 + LRK53_RS11030 0.81 -0.3 2,465,737 + LRK53_RS11030 0.81 -0.8 2,465,737 + LRK53_RS11030 0.81 -0.0 2,465,737 + LRK53_RS11030 0.81 -0.0 2,465,737 + LRK53_RS11030 0.81 -0.0 2,465,737 + LRK53_RS11030 0.81 -1.3 2,465,737 + LRK53_RS11030 0.81 -0.4 2,465,737 + LRK53_RS11030 0.81 -1.0 2,465,737 + LRK53_RS11030 0.81 -0.5 2,465,737 + LRK53_RS11030 0.81 -1.0 2,465,737 + LRK53_RS11030 0.81 +1.0 2,465,737 + LRK53_RS11030 0.81 +0.0 2,465,737 + LRK53_RS11030 0.81 +1.0 2,465,738 - LRK53_RS11030 0.81 -0.6 2,465,738 - LRK53_RS11030 0.81 -0.8 2,465,738 - LRK53_RS11030 0.81 -1.3 2,465,738 - LRK53_RS11030 0.81 +0.4 2,465,738 - LRK53_RS11030 0.81 -0.9 2,465,738 - LRK53_RS11030 0.81 -0.0 2,465,738 - LRK53_RS11030 0.81 -2.3 2,465,738 - LRK53_RS11030 0.81 -0.6 2,465,738 - LRK53_RS11030 0.81 -1.1 2,465,789 - LRK53_RS11030 0.84 -0.8 2,465,789 - LRK53_RS11030 0.84 -0.0 2,465,789 - LRK53_RS11030 0.84 -1.8 2,465,789 - LRK53_RS11030 0.84 -1.3 2,465,789 - LRK53_RS11030 0.84 -1.6 2,466,068 + -1.0 2,466,068 + -0.5 2,466,068 + -0.2 2,466,068 + -1.5 2,466,069 - +2.0 2,466,076 + +0.6 2,466,076 + -0.8 2,466,174 + LRK53_RS11035 0.12 -1.3 2,466,175 - LRK53_RS11035 0.12 +1.0 2,466,189 + LRK53_RS11035 0.19 -1.0 2,466,268 + LRK53_RS11035 0.56 -1.3 2,466,283 + LRK53_RS11035 0.63 -2.7 2,466,283 + LRK53_RS11035 0.63 -0.2 2,466,284 - LRK53_RS11035 0.63 -0.6 2,466,400 + -0.6 2,466,400 + -0.6 2,466,400 + -1.3 2,466,400 + -0.0 2,466,400 + -1.5 2,466,401 - -0.0 2,466,401 - -0.2 2,466,401 - +1.0 2,466,401 - -0.1 2,466,401 - -1.6 2,466,401 - +0.2 2,466,401 - +1.0 2,466,401 - -0.8 2,466,401 - -1.6 2,466,401 - +0.3 2,466,459 + -1.0 2,466,459 + -1.6 2,466,460 - -0.8 2,466,460 - +0.6 2,466,716 - -0.9 2,466,716 - -0.0 2,466,738 + +0.2 2,466,738 + -0.6 2,466,807 + LRK53_RS11040 0.25 -1.3 2,466,807 + LRK53_RS11040 0.25 -0.4 2,466,808 - LRK53_RS11040 0.25 -1.6 2,466,831 + LRK53_RS11040 0.34 -0.0 2,466,852 + LRK53_RS11040 0.41 -1.2 2,466,852 + LRK53_RS11040 0.41 +0.9 2,466,984 + LRK53_RS11040 0.89 +1.6 2,467,048 - +0.4 2,467,048 - -1.3 2,467,048 - -0.0 2,467,118 + -1.6 2,467,118 + +0.4 2,467,118 + -2.0 2,467,119 - -1.3 2,467,119 - -0.0
Or see this region's nucleotide sequence